data_4MCH # _model_server_result.job_id 13y4U1Ist8NxV7u0minsDA _model_server_result.datetime_utc '2024-12-01 19:10:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4mch # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 4MCH # _exptl.entry_id 4MCH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 14 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4MCH _cell.length_a 163.975 _cell.length_b 163.975 _cell.length_c 58.355 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4MCH _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 58.355 5 'crystal symmetry operation' 5_556 x-y,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 58.355 6 'crystal symmetry operation' 6_556 -x,-x+y,-z+1 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 58.355 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N ? 4 M N N ? 4 N N N ? 4 O N N ? 4 P N N ? 4 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 22 A SER 0 1_555 A N MSE 23 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C MSE 23 A MSE 1 1_555 A N SER 24 A SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 A C LEU 55 A LEU 33 1_555 A N MSE 56 A MSE 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale4 A C MSE 56 A MSE 34 1_555 A N ASP 57 A ASP 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale5 A C SER 91 A SER 69 1_555 A N MSE 92 A MSE 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale6 A C MSE 92 A MSE 70 1_555 A N ILE 93 A ILE 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale7 A C ALA 115 A ALA 93 1_555 A N MSE 116 A MSE 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale8 A C MSE 116 A MSE 94 1_555 A N GLN 117 A GLN 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale9 A C ASP 201 A ASP 179 1_555 A N MSE 202 A MSE 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale10 A C MSE 202 A MSE 180 1_555 A N GLU 203 A GLU 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale11 A C ALA 245 A ALA 223 1_555 A N MSE 246 A MSE 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale12 A C MSE 246 A MSE 224 1_555 A N MSE 247 A MSE 225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale13 A C MSE 247 A MSE 225 1_555 A N ASN 248 A ASN 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 106 n n S C1 DMS sing 107 n n S C2 DMS sing 108 n n C1 H11 DMS sing 109 n n C1 H12 DMS sing 110 n n C1 H13 DMS sing 111 n n C2 H21 DMS sing 112 n n C2 H22 DMS sing 113 n n C2 H23 DMS sing 114 n n # _atom_sites.entry_id 4MCH _atom_sites.fract_transf_matrix[1][1] 0.006099 _atom_sites.fract_transf_matrix[1][2] 0.003521 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007042 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017137 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 500 500 SO4 SO4 . C 3 61N A 1 501 501 61N 61N . D 4 DMS A 1 502 502 DMS DMS . E 4 DMS A 1 503 503 DMS DMS . F 4 DMS A 1 504 504 DMS DMS . G 4 DMS A 1 505 505 DMS DMS . H 4 DMS A 1 506 506 DMS DMS . I 4 DMS A 1 507 507 DMS DMS . J 4 DMS A 1 508 508 DMS DMS . K 4 DMS A 1 509 509 DMS DMS . L 4 DMS A 1 510 510 DMS DMS . M 4 DMS A 1 511 511 DMS DMS . N 4 DMS A 1 512 512 DMS DMS . O 4 DMS A 1 513 513 DMS DMS . P 4 DMS A 1 514 514 DMS DMS . Q 4 DMS A 1 515 515 DMS DMS . R 5 HOH A 1 601 601 HOH HOH . R 5 HOH A 2 602 602 HOH HOH . R 5 HOH A 3 603 603 HOH HOH . R 5 HOH A 4 604 604 HOH HOH . R 5 HOH A 5 605 605 HOH HOH . R 5 HOH A 6 606 606 HOH HOH . R 5 HOH A 7 607 607 HOH HOH . R 5 HOH A 8 608 608 HOH HOH . R 5 HOH A 9 609 609 HOH HOH . R 5 HOH A 10 610 610 HOH HOH . R 5 HOH A 11 611 611 HOH HOH . R 5 HOH A 12 612 612 HOH HOH . R 5 HOH A 13 613 613 HOH HOH . R 5 HOH A 14 614 614 HOH HOH . R 5 HOH A 15 615 616 HOH HOH . R 5 HOH A 16 616 617 HOH HOH . R 5 HOH A 17 617 618 HOH HOH . R 5 HOH A 18 618 619 HOH HOH . R 5 HOH A 19 619 620 HOH HOH . R 5 HOH A 20 620 621 HOH HOH . R 5 HOH A 21 621 622 HOH HOH . R 5 HOH A 22 622 623 HOH HOH . R 5 HOH A 23 623 624 HOH HOH . R 5 HOH A 24 624 625 HOH HOH . R 5 HOH A 25 625 627 HOH HOH . R 5 HOH A 26 626 628 HOH HOH . R 5 HOH A 27 627 629 HOH HOH . R 5 HOH A 28 628 630 HOH HOH . R 5 HOH A 29 629 631 HOH HOH . R 5 HOH A 30 630 632 HOH HOH . R 5 HOH A 31 631 633 HOH HOH . R 5 HOH A 32 632 634 HOH HOH . R 5 HOH A 33 633 635 HOH HOH . R 5 HOH A 34 634 636 HOH HOH . R 5 HOH A 35 635 637 HOH HOH . R 5 HOH A 36 636 638 HOH HOH . R 5 HOH A 37 637 639 HOH HOH . R 5 HOH A 38 638 640 HOH HOH . R 5 HOH A 39 639 641 HOH HOH . R 5 HOH A 40 640 642 HOH HOH . R 5 HOH A 41 641 643 HOH HOH . R 5 HOH A 42 642 645 HOH HOH . R 5 HOH A 43 643 646 HOH HOH . R 5 HOH A 44 644 648 HOH HOH . R 5 HOH A 45 645 649 HOH HOH . R 5 HOH A 46 646 651 HOH HOH . R 5 HOH A 47 647 652 HOH HOH . R 5 HOH A 48 648 653 HOH HOH . R 5 HOH A 49 649 654 HOH HOH . R 5 HOH A 50 650 655 HOH HOH . R 5 HOH A 51 651 656 HOH HOH . R 5 HOH A 52 652 657 HOH HOH . R 5 HOH A 53 653 658 HOH HOH . R 5 HOH A 54 654 659 HOH HOH . R 5 HOH A 55 655 660 HOH HOH . R 5 HOH A 56 656 661 HOH HOH . R 5 HOH A 57 657 662 HOH HOH . R 5 HOH A 58 658 663 HOH HOH . R 5 HOH A 59 659 664 HOH HOH . R 5 HOH A 60 660 665 HOH HOH . R 5 HOH A 61 661 666 HOH HOH . R 5 HOH A 62 662 667 HOH HOH . R 5 HOH A 63 663 668 HOH HOH . R 5 HOH A 64 664 669 HOH HOH . R 5 HOH A 65 665 670 HOH HOH . R 5 HOH A 66 666 671 HOH HOH . R 5 HOH A 67 667 672 HOH HOH . R 5 HOH A 68 668 673 HOH HOH . R 5 HOH A 69 669 674 HOH HOH . R 5 HOH A 70 670 675 HOH HOH . R 5 HOH A 71 671 676 HOH HOH . R 5 HOH A 72 672 677 HOH HOH . R 5 HOH A 73 673 678 HOH HOH . R 5 HOH A 74 674 679 HOH HOH . R 5 HOH A 75 675 680 HOH HOH . R 5 HOH A 76 676 681 HOH HOH . R 5 HOH A 77 677 682 HOH HOH . R 5 HOH A 78 678 683 HOH HOH . R 5 HOH A 79 679 684 HOH HOH . R 5 HOH A 80 680 685 HOH HOH . R 5 HOH A 81 681 686 HOH HOH . R 5 HOH A 82 682 687 HOH HOH . R 5 HOH A 83 683 688 HOH HOH . R 5 HOH A 84 684 689 HOH HOH . R 5 HOH A 85 685 690 HOH HOH . R 5 HOH A 86 686 691 HOH HOH . R 5 HOH A 87 687 692 HOH HOH . R 5 HOH A 88 688 693 HOH HOH . R 5 HOH A 89 689 694 HOH HOH . R 5 HOH A 90 690 695 HOH HOH . R 5 HOH A 91 691 696 HOH HOH . R 5 HOH A 92 692 697 HOH HOH . R 5 HOH A 93 693 699 HOH HOH . R 5 HOH A 94 694 700 HOH HOH . R 5 HOH A 95 695 701 HOH HOH . R 5 HOH A 96 696 702 HOH HOH . R 5 HOH A 97 697 703 HOH HOH . R 5 HOH A 98 698 704 HOH HOH . R 5 HOH A 99 699 705 HOH HOH . R 5 HOH A 100 700 706 HOH HOH . R 5 HOH A 101 701 707 HOH HOH . R 5 HOH A 102 702 708 HOH HOH . R 5 HOH A 103 703 709 HOH HOH . R 5 HOH A 104 704 710 HOH HOH . R 5 HOH A 105 705 711 HOH HOH . R 5 HOH A 106 706 712 HOH HOH . R 5 HOH A 107 707 713 HOH HOH . R 5 HOH A 108 708 714 HOH HOH . R 5 HOH A 109 709 715 HOH HOH . R 5 HOH A 110 710 716 HOH HOH . R 5 HOH A 111 711 717 HOH HOH . R 5 HOH A 112 712 718 HOH HOH . R 5 HOH A 113 713 719 HOH HOH . R 5 HOH A 114 714 720 HOH HOH . R 5 HOH A 115 715 721 HOH HOH . R 5 HOH A 116 716 722 HOH HOH . R 5 HOH A 117 717 723 HOH HOH . R 5 HOH A 118 718 724 HOH HOH . R 5 HOH A 119 719 725 HOH HOH . R 5 HOH A 120 720 726 HOH HOH . R 5 HOH A 121 721 727 HOH HOH . R 5 HOH A 122 722 728 HOH HOH . R 5 HOH A 123 723 729 HOH HOH . R 5 HOH A 124 724 730 HOH HOH . R 5 HOH A 125 725 731 HOH HOH . R 5 HOH A 126 726 732 HOH HOH . R 5 HOH A 127 727 733 HOH HOH . R 5 HOH A 128 728 734 HOH HOH . R 5 HOH A 129 729 735 HOH HOH . R 5 HOH A 130 730 736 HOH HOH . R 5 HOH A 131 731 737 HOH HOH . R 5 HOH A 132 732 738 HOH HOH . R 5 HOH A 133 733 739 HOH HOH . R 5 HOH A 134 734 740 HOH HOH . R 5 HOH A 135 735 741 HOH HOH . R 5 HOH A 136 736 742 HOH HOH . R 5 HOH A 137 737 743 HOH HOH . R 5 HOH A 138 738 744 HOH HOH . R 5 HOH A 139 739 745 HOH HOH . R 5 HOH A 140 740 746 HOH HOH . R 5 HOH A 141 741 747 HOH HOH . R 5 HOH A 142 742 748 HOH HOH . R 5 HOH A 143 743 749 HOH HOH . R 5 HOH A 144 744 750 HOH HOH . R 5 HOH A 145 745 751 HOH HOH . R 5 HOH A 146 746 752 HOH HOH . R 5 HOH A 147 747 753 HOH HOH . R 5 HOH A 148 748 754 HOH HOH . R 5 HOH A 149 749 755 HOH HOH . R 5 HOH A 150 750 756 HOH HOH . R 5 HOH A 151 751 757 HOH HOH . R 5 HOH A 152 752 758 HOH HOH . R 5 HOH A 153 753 759 HOH HOH . R 5 HOH A 154 754 760 HOH HOH . R 5 HOH A 155 755 1 HOH HOH . R 5 HOH A 156 756 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . D 4 -14.122 29.611 16.908 0.6 44.17 ? S DMS 502 A 1 HETATM 2 O O DMS . . . D 4 -13.121 28.594 17.289 0.6 39.57 ? O DMS 502 A 1 HETATM 3 C C1 DMS . . . D 4 -13.926 30.992 17.89 0.6 43.24 ? C1 DMS 502 A 1 HETATM 4 C C2 DMS . . . D 4 -13.707 30.275 15.391 0.6 43.21 ? C2 DMS 502 A 1 # _model_server_stats.io_time_ms 77 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #