data_4MD1 # _model_server_result.job_id l69Z4h-zv07e0xyhTjAAHA _model_server_result.datetime_utc '2024-11-29 04:14:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4md1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1002}' # _entry.id 4MD1 # _exptl.entry_id 4MD1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 410.718 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (6E,10E,14E,18E)-2,6,10,15,19,23-hexamethyltetracosa-2,6,10,14,18,22-hexaene _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4MD1 _cell.length_a 60.91 _cell.length_b 60.91 _cell.length_c 110.1 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4MD1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 30.455 52.749607 0 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -30.455 52.749607 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 216 A LYS 216 1_555 U C15 RET . A RET 1020 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.465 doub covale ? covale2 A NZ LYS 216 A LYS 216 1_555 U C15 RET . A RET 1020 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.515 doub # _chem_comp.formula 'C30 H50' _chem_comp.formula_weight 410.718 _chem_comp.id SQL _chem_comp.mon_nstd_flag . _chem_comp.name (6E,10E,14E,18E)-2,6,10,15,19,23-hexamethyltetracosa-2,6,10,14,18,22-hexaene _chem_comp.type non-polymer _chem_comp.pdbx_synonyms squalene # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C3 C2 SQL sing 438 n n C1 C2 SQL sing 439 n n C2 C4 SQL doub 440 n n C4 C5 SQL sing 441 n n C5 C6 SQL sing 442 n n C6 C7 SQL sing 443 n n C8 C7 SQL sing 444 n n C7 C9 SQL doub 445 e n C9 C10 SQL sing 446 n n C10 C11 SQL sing 447 n n C11 C12 SQL sing 448 n n C13 C12 SQL sing 449 n n C12 C14 SQL doub 450 e n C14 C15 SQL sing 451 n n C15 C16 SQL sing 452 n n C16 C17 SQL sing 453 n n C17 C18 SQL doub 454 e n C18 C19 SQL sing 455 n n C18 C20 SQL sing 456 n n C20 C21 SQL sing 457 n n C21 C22 SQL sing 458 n n C22 C23 SQL doub 459 e n C23 C30 SQL sing 460 n n C23 C24 SQL sing 461 n n C24 C25 SQL sing 462 n n C25 C26 SQL sing 463 n n C26 C27 SQL doub 464 n n C27 C29 SQL sing 465 n n C27 C28 SQL sing 466 n n C1 H1 SQL sing 467 n n C1 H2 SQL sing 468 n n C1 H3 SQL sing 469 n n C3 H4 SQL sing 470 n n C3 H5 SQL sing 471 n n C3 H6 SQL sing 472 n n C4 H7 SQL sing 473 n n C5 H8 SQL sing 474 n n C6 H9 SQL sing 475 n n C8 H10 SQL sing 476 n n C8 H11 SQL sing 477 n n C8 H12 SQL sing 478 n n C9 H13 SQL sing 479 n n C10 H14 SQL sing 480 n n C11 H15 SQL sing 481 n n C13 H16 SQL sing 482 n n C13 H17 SQL sing 483 n n C13 H18 SQL sing 484 n n C14 H19 SQL sing 485 n n C15 H20 SQL sing 486 n n C15 H21 SQL sing 487 n n C16 H22 SQL sing 488 n n C17 H23 SQL sing 489 n n C19 H24 SQL sing 490 n n C19 H25 SQL sing 491 n n C19 H26 SQL sing 492 n n C20 H27 SQL sing 493 n n C21 H28 SQL sing 494 n n C22 H29 SQL sing 495 n n C24 H30 SQL sing 496 n n C25 H31 SQL sing 497 n n C25 H32 SQL sing 498 n n C26 H33 SQL sing 499 n n C28 H34 SQL sing 500 n n C28 H35 SQL sing 501 n n C28 H36 SQL sing 502 n n C29 H37 SQL sing 503 n n C29 H38 SQL sing 504 n n C29 H39 SQL sing 505 n n C30 H40 SQL sing 506 n n C30 H41 SQL sing 507 n n C30 H42 SQL sing 508 n n C5 H43 SQL sing 509 n n C6 H44 SQL sing 510 n n C10 H45 SQL sing 511 n n C11 H46 SQL sing 512 n n C16 H47 SQL sing 513 n n C20 H48 SQL sing 514 n n C21 H49 SQL sing 515 n n C24 H50 SQL sing 516 n n # _atom_sites.entry_id 4MD1 _atom_sites.fract_transf_matrix[1][1] 0.016418 _atom_sites.fract_transf_matrix[1][2] 0.009479 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018957 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009083 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 L2P A 1 1001 1001 L2P L2P . C 3 SQL A 1 1002 1002 SQL SQN . D 2 L2P A 1 1003 1003 L2P L2P . E 2 L2P A 1 1004 1004 L2P L2P . F 2 L2P A 1 1005 1005 L2P L2P . G 2 L2P A 1 1006 1006 L2P L2P . H 2 L2P A 1 1007 1007 L2P L2P . I 2 L2P A 1 1008 1008 L2P L2P . J 2 L2P A 1 1009 1009 L2P L2P . K 2 L2P A 1 1010 1010 L2P L2P . L 2 L2P A 1 1011 1011 L2P L2P . M 2 L2P A 1 1012 1012 L2P L2P . N 2 L2P A 1 1013 1013 L2P L2P . O 2 L2P A 1 1014 1014 L2P L2P . P 2 L2P A 1 1015 1015 L2P L2P . Q 2 L2P A 1 1016 1016 L2P L2P . R 2 L2P A 1 1017 1017 L2P L2P . S 2 L2P A 1 1018 1018 L2P L2P . T 2 L2P A 1 1019 1019 L2P L2P . U 4 RET A 1 1020 216 RET LYR . V 5 HOH A 1 1101 401 HOH HOH . V 5 HOH A 2 1102 402 HOH HOH . V 5 HOH A 3 1103 403 HOH HOH . V 5 HOH A 4 1104 404 HOH HOH . V 5 HOH A 5 1105 405 HOH HOH . V 5 HOH A 6 1106 406 HOH HOH . V 5 HOH A 7 1107 407 HOH HOH . V 5 HOH A 8 1108 409 HOH HOH . V 5 HOH A 9 1109 411 HOH HOH . V 5 HOH A 10 1110 412 HOH HOH . V 5 HOH A 11 1111 414 HOH HOH . V 5 HOH A 12 1112 415 HOH HOH . V 5 HOH A 13 1113 416 HOH HOH . V 5 HOH A 14 1114 418 HOH HOH . V 5 HOH A 15 1115 419 HOH HOH . V 5 HOH A 16 1116 420 HOH HOH . V 5 HOH A 17 1117 421 HOH HOH . V 5 HOH A 18 1118 423 HOH HOH . V 5 HOH A 19 1119 424 HOH HOH . V 5 HOH A 20 1120 425 HOH HOH . V 5 HOH A 21 1121 427 HOH HOH . V 5 HOH A 22 1122 428 HOH HOH . V 5 HOH A 23 1123 430 HOH HOH . V 5 HOH A 24 1124 431 HOH HOH . V 5 HOH A 25 1125 432 HOH HOH . V 5 HOH A 26 1126 501 HOH HOH . V 5 HOH A 27 1127 502 HOH HOH . V 5 HOH A 28 1128 511 HOH HOH . V 5 HOH A 29 1129 512 HOH HOH . V 5 HOH A 30 1130 513 HOH HOH . V 5 HOH A 31 1131 514 HOH HOH . V 5 HOH A 32 1132 521 HOH HOH . V 5 HOH A 33 1133 522 HOH HOH . V 5 HOH A 34 1134 524 HOH HOH . V 5 HOH A 35 1135 526 HOH HOH . V 5 HOH A 36 1136 527 HOH HOH . V 5 HOH A 37 1137 530 HOH HOH . V 5 HOH A 38 1138 533 HOH HOH . V 5 HOH A 39 1139 538 HOH HOH . V 5 HOH A 40 1140 539 HOH HOH . V 5 HOH A 41 1141 544 HOH HOH . V 5 HOH A 42 1142 545 HOH HOH . V 5 HOH A 43 1143 649 HOH HOH . V 5 HOH A 44 1144 653 HOH HOH . V 5 HOH A 45 1145 655 HOH HOH . V 5 HOH A 46 1146 657 HOH HOH . V 5 HOH A 47 1147 658 HOH HOH . V 5 HOH A 48 1148 660 HOH HOH . V 5 HOH A 49 1149 670 HOH HOH . V 5 HOH A 50 1150 671 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 SQL . . . C 3 22.13 17.141 51.478 1 33.44 ? C1 SQL 1002 A 1 HETATM 2 C C2 SQL . . . C 3 21.956 16.883 49.982 1 33.79 ? C2 SQL 1002 A 1 HETATM 3 C C4 SQL . . . C 3 23.151 16.147 49.369 1 43.34 ? C4 SQL 1002 A 1 HETATM 4 C C5 SQL . . . C 3 22.743 15.676 47.973 1 37.22 ? C5 SQL 1002 A 1 HETATM 5 C C6 SQL . . . C 3 23.894 15.114 47.14 1 40.26 ? C6 SQL 1002 A 1 HETATM 6 C C7 SQL . . . C 3 23.305 14.6 45.82 1 43.02 ? C7 SQL 1002 A 1 HETATM 7 C C8 SQL . . . C 3 24.363 14.312 44.752 1 40.73 ? C8 SQL 1002 A 1 HETATM 8 C C10 SQL . . . C 3 15.947 9.702 55.198 1 42.11 ? C10 SQL 1002 A 1 HETATM 9 C C11 SQL . . . C 3 16.681 10.985 55.564 1 44.29 ? C11 SQL 1002 A 1 HETATM 10 C C12 SQL . . . C 3 16.673 11.164 57.087 1 37.31 ? C12 SQL 1002 A 1 HETATM 11 C C14 SQL . . . C 3 17.53 10.24 57.964 1 58.83 ? C14 SQL 1002 A 1 HETATM 12 C C15 SQL . . . C 3 19.014 10.569 57.76 1 49.73 ? C15 SQL 1002 A 1 HETATM 13 C C17 SQL . . . C 3 16.09 11.044 52.206 1 42.49 ? C17 SQL 1002 A 1 HETATM 14 C C18 SQL . . . C 3 16.505 11.687 50.879 1 44.04 ? C18 SQL 1002 A 1 HETATM 15 C C20 SQL . . . C 3 17.948 12.201 50.911 1 35.92 ? C20 SQL 1002 A 1 HETATM 16 C C21 SQL . . . C 3 18.141 13.298 51.957 1 39.66 ? C21 SQL 1002 A 1 HETATM 17 C C22 SQL . . . C 3 19.609 13.724 52.013 1 47.02 ? C22 SQL 1002 A 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 22 _model_server_stats.element_count 17 #