data_4MD6
#
_model_server_result.job_id            NXyDDCPILf1OiNLwULM-ug 
_model_server_result.datetime_utc      '2025-03-05 02:34:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4md6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":902}' 
#
_entry.id    4MD6 
#
_exptl.entry_id    4MD6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              373.424 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3-(4-hydroxybenzyl)-1-(thiophen-2-yl)chromeno[2,3-c]pyrrol-9(2H)-one 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4MD6 
_cell.length_a            74.106 
_cell.length_b            74.106 
_cell.length_c            132.344 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4MD6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 143 A CYS 677 1_555 A SG CYS 143 A CYS 677 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.852 ? 
metalc ? metalc1 A NE2 HIS 83 A HIS 617 1_555 D ZN ZN . A ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? 
metalc ? metalc2 A NE2 HIS 119 A HIS 653 1_555 D ZN ZN . A ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? 
metalc ? metalc3 A OD2 ASP 120 A ASP 654 1_555 D ZN ZN . A ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? 
metalc ? metalc4 A OD1 ASP 120 A ASP 654 1_555 E MG MG . A MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? 
metalc ? metalc5 A OD1 ASP 230 A ASP 764 1_555 D ZN ZN . A ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? 
metalc ? metalc6 B O3 SO4 . A SO4 901 1_555 D ZN ZN . A ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? 
metalc ? metalc7 D ZN ZN . A ZN 903 1_555 F O HOH . A HOH 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? 
metalc ? metalc8 E MG MG . A MG 904 1_555 F O HOH . A HOH 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? 
metalc ? metalc9 E MG MG . A MG 904 1_555 F O HOH . A HOH 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? 
metalc ? metalc10 E MG MG . A MG 904 1_555 F O HOH . A HOH 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? 
metalc ? metalc11 E MG MG . A MG 904 1_555 F O HOH . A HOH 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? 
metalc ? metalc12 E MG MG . A MG 904 1_555 F O HOH . A HOH 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? 
#
_chem_comp.formula           'C22 H15 N O3 S' 
_chem_comp.formula_weight    373.424 
_chem_comp.id                24E 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3-(4-hydroxybenzyl)-1-(thiophen-2-yl)chromeno[2,3-c]pyrrol-9(2H)-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C21 C20 24E doub 1 n y 
C21 C22 24E sing 2 n y 
C20 C17 24E sing 3 n y 
O3 C22 24E sing 4 n n 
C22 C19 24E doub 5 n y 
C17 C16 24E sing 6 n n 
C17 C18 24E doub 7 n y 
C16 C10 24E sing 8 n n 
C19 C18 24E sing 9 n y 
C10 C9 24E doub 10 n y 
C10 N1 24E sing 11 n y 
O1 C9 24E sing 12 n n 
O1 C4 24E sing 13 n n 
C6 C4 24E doub 14 n y 
C6 C5 24E sing 15 n y 
C9 C8 24E sing 16 n y 
N1 C11 24E sing 17 n y 
C4 C2 24E sing 18 n y 
C5 C3 24E doub 19 n y 
C8 C11 24E doub 20 n y 
C8 C7 24E sing 21 n n 
C11 C12 24E sing 22 n n 
C2 C7 24E sing 23 n n 
C2 C1 24E doub 24 n y 
C3 C1 24E sing 25 n y 
C7 O2 24E doub 26 n n 
C12 S1 24E sing 27 n y 
C12 C13 24E doub 28 n y 
S1 C15 24E sing 29 n y 
C13 C14 24E sing 30 n y 
C15 C14 24E doub 31 n y 
C18 H1 24E sing 32 n n 
C19 H2 24E sing 33 n n 
O3 H3 24E sing 34 n n 
C21 H4 24E sing 35 n n 
C20 H5 24E sing 36 n n 
C16 H6 24E sing 37 n n 
C16 H7 24E sing 38 n n 
N1 H8 24E sing 39 n n 
C6 H9 24E sing 40 n n 
C5 H10 24E sing 41 n n 
C3 H11 24E sing 42 n n 
C1 H12 24E sing 43 n n 
C15 H13 24E sing 44 n n 
C14 H14 24E sing 45 n n 
C13 H15 24E sing 46 n n 
#
_atom_sites.entry_id                     4MD6 
_atom_sites.fract_transf_matrix[1][1]    0.013494 
_atom_sites.fract_transf_matrix[1][2]    0.007791 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015582 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007556 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 A 1 901 378 SO4 SO4 . 
C 3 24E A 1 902 1 24E 5R . 
D 4 ZN A 1 903 501 ZN ZN . 
E 5 MG A 1 904 502 MG MG . 
F 6 HOH A 1 1001 1 HOH TIP . 
F 6 HOH A 2 1002 2 HOH TIP . 
F 6 HOH A 3 1003 3 HOH TIP . 
F 6 HOH A 4 1004 4 HOH TIP . 
F 6 HOH A 5 1005 5 HOH TIP . 
F 6 HOH A 6 1006 6 HOH TIP . 
F 6 HOH A 7 1007 7 HOH TIP . 
F 6 HOH A 8 1008 8 HOH TIP . 
F 6 HOH A 9 1009 9 HOH TIP . 
F 6 HOH A 10 1010 10 HOH TIP . 
F 6 HOH A 11 1011 11 HOH TIP . 
F 6 HOH A 12 1012 12 HOH TIP . 
F 6 HOH A 13 1013 13 HOH TIP . 
F 6 HOH A 14 1014 14 HOH TIP . 
F 6 HOH A 15 1015 15 HOH TIP . 
F 6 HOH A 16 1016 16 HOH TIP . 
F 6 HOH A 17 1017 17 HOH TIP . 
F 6 HOH A 18 1018 18 HOH TIP . 
F 6 HOH A 19 1019 19 HOH TIP . 
F 6 HOH A 20 1020 20 HOH TIP . 
F 6 HOH A 21 1021 21 HOH TIP . 
F 6 HOH A 22 1022 22 HOH TIP . 
F 6 HOH A 23 1023 23 HOH TIP . 
F 6 HOH A 24 1024 24 HOH TIP . 
F 6 HOH A 25 1025 25 HOH TIP . 
F 6 HOH A 26 1026 26 HOH TIP . 
F 6 HOH A 27 1027 27 HOH TIP . 
F 6 HOH A 28 1028 28 HOH TIP . 
F 6 HOH A 29 1029 29 HOH TIP . 
F 6 HOH A 30 1030 30 HOH TIP . 
F 6 HOH A 31 1031 31 HOH TIP . 
F 6 HOH A 32 1032 32 HOH TIP . 
F 6 HOH A 33 1033 33 HOH TIP . 
F 6 HOH A 34 1034 34 HOH TIP . 
F 6 HOH A 35 1035 35 HOH TIP . 
F 6 HOH A 36 1036 36 HOH TIP . 
F 6 HOH A 37 1037 37 HOH TIP . 
F 6 HOH A 38 1038 38 HOH TIP . 
F 6 HOH A 39 1039 39 HOH TIP . 
F 6 HOH A 40 1040 40 HOH TIP . 
F 6 HOH A 41 1041 41 HOH TIP . 
F 6 HOH A 42 1042 42 HOH TIP . 
F 6 HOH A 43 1043 43 HOH TIP . 
F 6 HOH A 44 1044 44 HOH TIP . 
F 6 HOH A 45 1045 45 HOH TIP . 
F 6 HOH A 46 1046 46 HOH TIP . 
F 6 HOH A 47 1047 47 HOH TIP . 
F 6 HOH A 48 1048 48 HOH TIP . 
F 6 HOH A 49 1049 49 HOH TIP . 
F 6 HOH A 50 1050 50 HOH TIP . 
F 6 HOH A 51 1051 51 HOH TIP . 
F 6 HOH A 52 1052 52 HOH TIP . 
F 6 HOH A 53 1053 53 HOH TIP . 
F 6 HOH A 54 1054 54 HOH TIP . 
F 6 HOH A 55 1055 55 HOH TIP . 
F 6 HOH A 56 1056 56 HOH TIP . 
F 6 HOH A 57 1057 57 HOH TIP . 
F 6 HOH A 58 1058 58 HOH TIP . 
F 6 HOH A 59 1059 59 HOH TIP . 
F 6 HOH A 60 1060 60 HOH TIP . 
F 6 HOH A 61 1061 61 HOH TIP . 
F 6 HOH A 62 1062 62 HOH TIP . 
F 6 HOH A 63 1063 63 HOH TIP . 
F 6 HOH A 64 1064 64 HOH TIP . 
F 6 HOH A 65 1065 65 HOH TIP . 
F 6 HOH A 66 1066 66 HOH TIP . 
F 6 HOH A 67 1067 67 HOH TIP . 
F 6 HOH A 68 1068 68 HOH TIP . 
F 6 HOH A 69 1069 69 HOH TIP . 
F 6 HOH A 70 1070 70 HOH TIP . 
F 6 HOH A 71 1071 71 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C18 24E . . . C 3 47.489 16.23 45.39 1 86.89 ? C18 24E 902 A 1 
HETATM 2 C C19 24E . . . C 3 48.862 16.335 45.199 1 86.88 ? C19 24E 902 A 1 
HETATM 3 C C22 24E . . . C 3 49.361 17.061 44.123 1 87.01 ? C22 24E 902 A 1 
HETATM 4 O O3 24E . . . C 3 50.703 17.221 43.974 1 87.6 ? O3 24E 902 A 1 
HETATM 5 C C21 24E . . . C 3 48.486 17.678 43.236 1 86.95 ? C21 24E 902 A 1 
HETATM 6 C C20 24E . . . C 3 47.113 17.576 43.43 1 86.53 ? C20 24E 902 A 1 
HETATM 7 C C17 24E . . . C 3 46.613 16.852 44.507 1 86.06 ? C17 24E 902 A 1 
HETATM 8 C C16 24E . . . C 3 45.091 16.715 44.696 1 85.28 ? C16 24E 902 A 1 
HETATM 9 C C10 24E . . . C 3 44.737 16.699 46.195 1 85.03 ? C10 24E 902 A 1 
HETATM 10 N N1 24E . . . C 3 44.952 17.762 47.139 1 85.24 ? N1 24E 902 A 1 
HETATM 11 C C9 24E . . . C 3 44.19 15.636 46.902 1 84.94 ? C9 24E 902 A 1 
HETATM 12 O O1 24E . . . C 3 43.832 14.333 46.454 1 85.19 ? O1 24E 902 A 1 
HETATM 13 C C4 24E . . . C 3 43.349 13.314 47.323 1 85.32 ? C4 24E 902 A 1 
HETATM 14 C C6 24E . . . C 3 43.048 12.056 46.812 1 85.2 ? C6 24E 902 A 1 
HETATM 15 C C5 24E . . . C 3 42.605 11.048 47.661 1 85.35 ? C5 24E 902 A 1 
HETATM 16 C C3 24E . . . C 3 42.459 11.294 49.022 1 85.11 ? C3 24E 902 A 1 
HETATM 17 C C1 24E . . . C 3 42.756 12.552 49.536 1 84.91 ? C1 24E 902 A 1 
HETATM 18 C C2 24E . . . C 3 43.203 13.556 48.684 1 84.99 ? C2 24E 902 A 1 
HETATM 19 C C7 24E . . . C 3 43.568 14.946 49.232 1 85.42 ? C7 24E 902 A 1 
HETATM 20 O O2 24E . . . C 3 43.455 15.198 50.43 1 86.27 ? O2 24E 902 A 1 
HETATM 21 C C8 24E . . . C 3 44.075 16 48.231 1 85.2 ? C8 24E 902 A 1 
HETATM 22 C C11 24E . . . C 3 44.488 17.255 48.404 1 85.17 ? C11 24E 902 A 1 
HETATM 23 C C12 24E . . . C 3 44.496 17.974 49.582 1 85.09 ? C12 24E 902 A 1 
HETATM 24 S S1 24E . . . C 3 45.11 19.562 49.765 1 85.07 ? S1 24E 902 A 1 
HETATM 25 C C15 24E . . . C 3 44.464 19.941 51.295 1 83.86 ? C15 24E 902 A 1 
HETATM 26 C C14 24E . . . C 3 43.772 18.876 51.694 1 84.78 ? C14 24E 902 A 1 
HETATM 27 C C13 24E . . . C 3 43.791 17.711 50.681 1 84.97 ? C13 24E 902 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           27 
#