data_4MDB
#
_model_server_result.job_id            qm-5PL7M852pG56G_Io_UQ 
_model_server_result.datetime_utc      '2024-11-29 19:14:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4mdb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":403}' 
#
_entry.id    4MDB 
#
_exptl.entry_id    4MDB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4MDB 
_cell.length_a            44.24 
_cell.length_b            44.24 
_cell.length_c            206.28 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4MDB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 36 A ASP 156 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.935 ? 
metalc ? metalc2 A OD1 ASP 36 A ASP 156 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? 
metalc ? metalc3 A OD2 ASP 129 A ASP 249 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? 
metalc ? metalc4 A OD1 ASP 164 A ASP 284 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? 
metalc ? metalc5 A OD2 ASP 164 A ASP 284 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? 
metalc ? metalc6 B OAH RLT . A RLT 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
metalc ? metalc7 B OAG RLT . A RLT 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? 
metalc ? metalc8 B OAE RLT . A RLT 401 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
metalc ? metalc9 B OAH RLT . A RLT 401 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? 
metalc ? metalc10 C MG MG . A MG 402 1_555 E O HOH . A HOH 533 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
metalc ? metalc11 D MG MG . A MG 403 1_555 E O HOH . A HOH 546 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? 
metalc ? metalc12 D MG MG . A MG 403 1_555 E O HOH . A HOH 549 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4MDB 
_atom_sites.fract_transf_matrix[1][1]    0.022604 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.022604 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004848 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 RLT A 1 401 1 RLT RLT . 
C 3 MG A 1 402 1 MG MG . 
D 3 MG A 1 403 1 MG MG . 
E 4 HOH A 1 501 1 HOH HOH . 
E 4 HOH A 2 502 2 HOH HOH . 
E 4 HOH A 3 503 3 HOH HOH . 
E 4 HOH A 4 504 4 HOH HOH . 
E 4 HOH A 5 505 5 HOH HOH . 
E 4 HOH A 6 506 6 HOH HOH . 
E 4 HOH A 7 507 7 HOH HOH . 
E 4 HOH A 8 508 8 HOH HOH . 
E 4 HOH A 9 509 9 HOH HOH . 
E 4 HOH A 10 510 10 HOH HOH . 
E 4 HOH A 11 511 11 HOH HOH . 
E 4 HOH A 12 512 12 HOH HOH . 
E 4 HOH A 13 513 13 HOH HOH . 
E 4 HOH A 14 514 14 HOH HOH . 
E 4 HOH A 15 515 15 HOH HOH . 
E 4 HOH A 16 516 16 HOH HOH . 
E 4 HOH A 17 517 17 HOH HOH . 
E 4 HOH A 18 518 18 HOH HOH . 
E 4 HOH A 19 519 19 HOH HOH . 
E 4 HOH A 20 520 20 HOH HOH . 
E 4 HOH A 21 521 21 HOH HOH . 
E 4 HOH A 22 522 22 HOH HOH . 
E 4 HOH A 23 523 23 HOH HOH . 
E 4 HOH A 24 524 24 HOH HOH . 
E 4 HOH A 25 525 25 HOH HOH . 
E 4 HOH A 26 526 26 HOH HOH . 
E 4 HOH A 27 527 27 HOH HOH . 
E 4 HOH A 28 528 28 HOH HOH . 
E 4 HOH A 29 529 29 HOH HOH . 
E 4 HOH A 30 530 30 HOH HOH . 
E 4 HOH A 31 531 31 HOH HOH . 
E 4 HOH A 32 532 32 HOH HOH . 
E 4 HOH A 33 533 33 HOH HOH . 
E 4 HOH A 34 534 34 HOH HOH . 
E 4 HOH A 35 535 35 HOH HOH . 
E 4 HOH A 36 536 36 HOH HOH . 
E 4 HOH A 37 537 37 HOH HOH . 
E 4 HOH A 38 538 38 HOH HOH . 
E 4 HOH A 39 539 39 HOH HOH . 
E 4 HOH A 40 540 40 HOH HOH . 
E 4 HOH A 41 541 41 HOH HOH . 
E 4 HOH A 42 542 42 HOH HOH . 
E 4 HOH A 43 543 43 HOH HOH . 
E 4 HOH A 44 544 44 HOH HOH . 
E 4 HOH A 45 545 45 HOH HOH . 
E 4 HOH A 46 546 46 HOH HOH . 
E 4 HOH A 47 547 47 HOH HOH . 
E 4 HOH A 48 548 48 HOH HOH . 
E 4 HOH A 49 549 49 HOH HOH . 
E 4 HOH A 50 550 50 HOH HOH . 
E 4 HOH A 51 551 51 HOH HOH . 
E 4 HOH A 52 552 52 HOH HOH . 
E 4 HOH A 53 553 53 HOH HOH . 
E 4 HOH A 54 554 54 HOH HOH . 
E 4 HOH A 55 555 55 HOH HOH . 
E 4 HOH A 56 556 56 HOH HOH . 
E 4 HOH A 57 557 57 HOH HOH . 
E 4 HOH A 58 558 58 HOH HOH . 
E 4 HOH A 59 559 59 HOH HOH . 
E 4 HOH A 60 560 60 HOH HOH . 
E 4 HOH A 61 561 61 HOH HOH . 
E 4 HOH A 62 562 62 HOH HOH . 
E 4 HOH A 63 563 63 HOH HOH . 
E 4 HOH A 64 564 64 HOH HOH . 
E 4 HOH A 65 565 65 HOH HOH . 
E 4 HOH A 66 566 66 HOH HOH . 
E 4 HOH A 67 567 67 HOH HOH . 
E 4 HOH A 68 568 68 HOH HOH . 
E 4 HOH A 69 569 69 HOH HOH . 
E 4 HOH A 70 570 70 HOH HOH . 
E 4 HOH A 71 571 71 HOH HOH . 
E 4 HOH A 72 572 73 HOH HOH . 
E 4 HOH A 73 573 74 HOH HOH . 
E 4 HOH A 74 574 75 HOH HOH . 
E 4 HOH A 75 575 76 HOH HOH . 
E 4 HOH A 76 576 77 HOH HOH . 
E 4 HOH A 77 577 78 HOH HOH . 
E 4 HOH A 78 578 79 HOH HOH . 
E 4 HOH A 79 579 80 HOH HOH . 
E 4 HOH A 80 580 81 HOH HOH . 
E 4 HOH A 81 581 82 HOH HOH . 
E 4 HOH A 82 582 83 HOH HOH . 
E 4 HOH A 83 583 84 HOH HOH . 
E 4 HOH A 84 584 85 HOH HOH . 
E 4 HOH A 85 585 86 HOH HOH . 
E 4 HOH A 86 586 87 HOH HOH . 
E 4 HOH A 87 587 88 HOH HOH . 
E 4 HOH A 88 588 89 HOH HOH . 
E 4 HOH A 89 589 90 HOH HOH . 
E 4 HOH A 90 590 91 HOH HOH . 
E 4 HOH A 91 591 92 HOH HOH . 
E 4 HOH A 92 592 93 HOH HOH . 
E 4 HOH A 93 593 94 HOH HOH . 
E 4 HOH A 94 594 95 HOH HOH . 
E 4 HOH A 95 595 96 HOH HOH . 
E 4 HOH A 96 596 97 HOH HOH . 
E 4 HOH A 97 597 98 HOH HOH . 
E 4 HOH A 98 598 99 HOH HOH . 
E 4 HOH A 99 599 100 HOH HOH . 
E 4 HOH A 100 600 101 HOH HOH . 
E 4 HOH A 101 601 102 HOH HOH . 
E 4 HOH A 102 602 103 HOH HOH . 
E 4 HOH A 103 603 105 HOH HOH . 
E 4 HOH A 104 604 106 HOH HOH . 
E 4 HOH A 105 605 108 HOH HOH . 
E 4 HOH A 106 606 109 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -8.096 
_atom_site.Cartn_y               18.786 
_atom_site.Cartn_z               -5.328 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        13.35 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           403 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           376 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#