data_4MDB # _model_server_result.job_id 73B17ZP3AAk88sQxNZVONA _model_server_result.datetime_utc '2024-11-13 22:29:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4mdb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 4MDB # _exptl.entry_id 4MDB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4MDB _cell.length_a 44.24 _cell.length_b 44.24 _cell.length_c 206.28 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4MDB _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 36 A ASP 156 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.935 ? metalc ? metalc2 A OD1 ASP 36 A ASP 156 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc3 A OD2 ASP 129 A ASP 249 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc4 A OD1 ASP 164 A ASP 284 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc5 A OD2 ASP 164 A ASP 284 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc6 B OAH RLT . A RLT 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc7 B OAG RLT . A RLT 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc8 B OAE RLT . A RLT 401 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc9 B OAH RLT . A RLT 401 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc10 C MG MG . A MG 402 1_555 E O HOH . A HOH 533 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc11 D MG MG . A MG 403 1_555 E O HOH . A HOH 546 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc12 D MG MG . A MG 403 1_555 E O HOH . A HOH 549 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4MDB _atom_sites.fract_transf_matrix[1][1] 0.022604 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022604 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004848 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RLT A 1 401 1 RLT RLT . C 3 MG A 1 402 1 MG MG . D 3 MG A 1 403 1 MG MG . E 4 HOH A 1 501 1 HOH HOH . E 4 HOH A 2 502 2 HOH HOH . E 4 HOH A 3 503 3 HOH HOH . E 4 HOH A 4 504 4 HOH HOH . E 4 HOH A 5 505 5 HOH HOH . E 4 HOH A 6 506 6 HOH HOH . E 4 HOH A 7 507 7 HOH HOH . E 4 HOH A 8 508 8 HOH HOH . E 4 HOH A 9 509 9 HOH HOH . E 4 HOH A 10 510 10 HOH HOH . E 4 HOH A 11 511 11 HOH HOH . E 4 HOH A 12 512 12 HOH HOH . E 4 HOH A 13 513 13 HOH HOH . E 4 HOH A 14 514 14 HOH HOH . E 4 HOH A 15 515 15 HOH HOH . E 4 HOH A 16 516 16 HOH HOH . E 4 HOH A 17 517 17 HOH HOH . E 4 HOH A 18 518 18 HOH HOH . E 4 HOH A 19 519 19 HOH HOH . E 4 HOH A 20 520 20 HOH HOH . E 4 HOH A 21 521 21 HOH HOH . E 4 HOH A 22 522 22 HOH HOH . E 4 HOH A 23 523 23 HOH HOH . E 4 HOH A 24 524 24 HOH HOH . E 4 HOH A 25 525 25 HOH HOH . E 4 HOH A 26 526 26 HOH HOH . E 4 HOH A 27 527 27 HOH HOH . E 4 HOH A 28 528 28 HOH HOH . E 4 HOH A 29 529 29 HOH HOH . E 4 HOH A 30 530 30 HOH HOH . E 4 HOH A 31 531 31 HOH HOH . E 4 HOH A 32 532 32 HOH HOH . E 4 HOH A 33 533 33 HOH HOH . E 4 HOH A 34 534 34 HOH HOH . E 4 HOH A 35 535 35 HOH HOH . E 4 HOH A 36 536 36 HOH HOH . E 4 HOH A 37 537 37 HOH HOH . E 4 HOH A 38 538 38 HOH HOH . E 4 HOH A 39 539 39 HOH HOH . E 4 HOH A 40 540 40 HOH HOH . E 4 HOH A 41 541 41 HOH HOH . E 4 HOH A 42 542 42 HOH HOH . E 4 HOH A 43 543 43 HOH HOH . E 4 HOH A 44 544 44 HOH HOH . E 4 HOH A 45 545 45 HOH HOH . E 4 HOH A 46 546 46 HOH HOH . E 4 HOH A 47 547 47 HOH HOH . E 4 HOH A 48 548 48 HOH HOH . E 4 HOH A 49 549 49 HOH HOH . E 4 HOH A 50 550 50 HOH HOH . E 4 HOH A 51 551 51 HOH HOH . E 4 HOH A 52 552 52 HOH HOH . E 4 HOH A 53 553 53 HOH HOH . E 4 HOH A 54 554 54 HOH HOH . E 4 HOH A 55 555 55 HOH HOH . E 4 HOH A 56 556 56 HOH HOH . E 4 HOH A 57 557 57 HOH HOH . E 4 HOH A 58 558 58 HOH HOH . E 4 HOH A 59 559 59 HOH HOH . E 4 HOH A 60 560 60 HOH HOH . E 4 HOH A 61 561 61 HOH HOH . E 4 HOH A 62 562 62 HOH HOH . E 4 HOH A 63 563 63 HOH HOH . E 4 HOH A 64 564 64 HOH HOH . E 4 HOH A 65 565 65 HOH HOH . E 4 HOH A 66 566 66 HOH HOH . E 4 HOH A 67 567 67 HOH HOH . E 4 HOH A 68 568 68 HOH HOH . E 4 HOH A 69 569 69 HOH HOH . E 4 HOH A 70 570 70 HOH HOH . E 4 HOH A 71 571 71 HOH HOH . E 4 HOH A 72 572 73 HOH HOH . E 4 HOH A 73 573 74 HOH HOH . E 4 HOH A 74 574 75 HOH HOH . E 4 HOH A 75 575 76 HOH HOH . E 4 HOH A 76 576 77 HOH HOH . E 4 HOH A 77 577 78 HOH HOH . E 4 HOH A 78 578 79 HOH HOH . E 4 HOH A 79 579 80 HOH HOH . E 4 HOH A 80 580 81 HOH HOH . E 4 HOH A 81 581 82 HOH HOH . E 4 HOH A 82 582 83 HOH HOH . E 4 HOH A 83 583 84 HOH HOH . E 4 HOH A 84 584 85 HOH HOH . E 4 HOH A 85 585 86 HOH HOH . E 4 HOH A 86 586 87 HOH HOH . E 4 HOH A 87 587 88 HOH HOH . E 4 HOH A 88 588 89 HOH HOH . E 4 HOH A 89 589 90 HOH HOH . E 4 HOH A 90 590 91 HOH HOH . E 4 HOH A 91 591 92 HOH HOH . E 4 HOH A 92 592 93 HOH HOH . E 4 HOH A 93 593 94 HOH HOH . E 4 HOH A 94 594 95 HOH HOH . E 4 HOH A 95 595 96 HOH HOH . E 4 HOH A 96 596 97 HOH HOH . E 4 HOH A 97 597 98 HOH HOH . E 4 HOH A 98 598 99 HOH HOH . E 4 HOH A 99 599 100 HOH HOH . E 4 HOH A 100 600 101 HOH HOH . E 4 HOH A 101 601 102 HOH HOH . E 4 HOH A 102 602 103 HOH HOH . E 4 HOH A 103 603 105 HOH HOH . E 4 HOH A 104 604 106 HOH HOH . E 4 HOH A 105 605 108 HOH HOH . E 4 HOH A 106 606 109 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -8.096 _atom_site.Cartn_y 18.786 _atom_site.Cartn_z -5.328 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 13.35 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 403 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #