data_4MDD # _model_server_result.job_id uDymzdoehXTf7qpWpauKig _model_server_result.datetime_utc '2024-11-08 09:08:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4mdd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":801}' # _entry.id 4MDD # _exptl.entry_id 4MDD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 509.635 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[2-{[benzyl(methyl)amino]methyl}-3-(4-fluoro-2-methoxyphenyl)-5-(propan-2-yl)-1H-indol-7-yl]methanesulfonamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4MDD _cell.length_a 72.543 _cell.length_b 72.543 _cell.length_c 229.472 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4MDD _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C28 H32 F N3 O3 S' _chem_comp.formula_weight 509.635 _chem_comp.id 29M _chem_comp.mon_nstd_flag . _chem_comp.name N-[2-{[benzyl(methyl)amino]methyl}-3-(4-fluoro-2-methoxyphenyl)-5-(propan-2-yl)-1H-indol-7-yl]methanesulfonamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F C11 29M sing 1 n n C10 C11 29M doub 2 n y C10 C9 29M sing 3 n y C11 C12 29M sing 4 n y C9 C8 29M doub 5 n y C12 C13 29M doub 6 n y C26 C25 29M sing 7 n n C8 C13 29M sing 8 n y C8 C5 29M sing 9 n n C25 C27 29M sing 10 n n C25 C 29M sing 11 n n C13 O 29M sing 12 n n C7 C 29M doub 13 n y C7 C6 29M sing 14 n y C C1 29M sing 15 n y C5 C6 29M sing 16 n y C5 C4 29M doub 17 n y C23 C22 29M doub 18 n y C23 C18 29M sing 19 n y C6 C3 29M doub 20 n y C22 C21 29M sing 21 n y C17 C18 29M sing 22 n n C17 N1 29M sing 23 n n O C14 29M sing 24 n n C18 C19 29M doub 25 n y C4 C15 29M sing 26 n n C4 N 29M sing 27 n y C1 C2 29M doub 28 n y C3 C2 29M sing 29 n y C3 N 29M sing 30 n y C15 N1 29M sing 31 n n C21 C20 29M doub 32 n y N1 C16 29M sing 33 n n C2 N2 29M sing 34 n n O2 S 29M doub 35 n n C19 C20 29M sing 36 n y C24 S 29M sing 37 n n S N2 29M sing 38 n n S O1 29M doub 39 n n N H1 29M sing 40 n n C1 H2 29M sing 41 n n N2 H4 29M sing 42 n n C7 H5 29M sing 43 n n C9 H6 29M sing 44 n n C10 H7 29M sing 45 n n C12 H8 29M sing 46 n n C14 H9 29M sing 47 n n C14 H10 29M sing 48 n n C14 H11 29M sing 49 n n C15 H12 29M sing 50 n n C15 H13 29M sing 51 n n C16 H14 29M sing 52 n n C16 H15 29M sing 53 n n C16 H16 29M sing 54 n n C17 H17 29M sing 55 n n C17 H18 29M sing 56 n n C19 H19 29M sing 57 n n C20 H20 29M sing 58 n n C21 H21 29M sing 59 n n C22 H22 29M sing 60 n n C23 H23 29M sing 61 n n C24 H24 29M sing 62 n n C24 H25 29M sing 63 n n C24 H26 29M sing 64 n n C25 H27 29M sing 65 n n C26 H28 29M sing 66 n n C26 H29 29M sing 67 n n C26 H30 29M sing 68 n n C27 H31 29M sing 69 n n C27 H32 29M sing 70 n n C27 H33 29M sing 71 n n # _atom_sites.entry_id 4MDD _atom_sites.fract_transf_matrix[1][1] 0.013785 _atom_sites.fract_transf_matrix[1][2] 0.007959 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015917 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004358 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 29M A 1 801 1 29M 29M . F 3 29M B 1 801 2 29M 29M . G 4 HOH A 1 901 4 HOH HOH . G 4 HOH A 2 902 6 HOH HOH . G 4 HOH A 3 903 7 HOH HOH . G 4 HOH A 4 904 10 HOH HOH . G 4 HOH A 5 905 13 HOH HOH . G 4 HOH A 6 906 14 HOH HOH . G 4 HOH A 7 907 16 HOH HOH . G 4 HOH A 8 908 17 HOH HOH . G 4 HOH A 9 909 18 HOH HOH . G 4 HOH A 10 910 19 HOH HOH . G 4 HOH A 11 911 21 HOH HOH . G 4 HOH A 12 912 22 HOH HOH . G 4 HOH A 13 913 25 HOH HOH . G 4 HOH A 14 914 27 HOH HOH . G 4 HOH A 15 915 30 HOH HOH . G 4 HOH A 16 916 31 HOH HOH . G 4 HOH A 17 917 32 HOH HOH . G 4 HOH A 18 918 34 HOH HOH . G 4 HOH A 19 919 35 HOH HOH . G 4 HOH A 20 920 37 HOH HOH . G 4 HOH A 21 921 38 HOH HOH . G 4 HOH A 22 922 40 HOH HOH . G 4 HOH A 23 923 42 HOH HOH . G 4 HOH A 24 924 43 HOH HOH . G 4 HOH A 25 925 44 HOH HOH . G 4 HOH A 26 926 45 HOH HOH . G 4 HOH A 27 927 46 HOH HOH . G 4 HOH A 28 928 47 HOH HOH . G 4 HOH A 29 929 50 HOH HOH . G 4 HOH A 30 930 51 HOH HOH . G 4 HOH A 31 931 52 HOH HOH . G 4 HOH A 32 932 53 HOH HOH . G 4 HOH A 33 933 54 HOH HOH . G 4 HOH A 34 934 57 HOH HOH . G 4 HOH A 35 935 61 HOH HOH . G 4 HOH A 36 936 62 HOH HOH . G 4 HOH A 37 937 63 HOH HOH . G 4 HOH A 38 938 65 HOH HOH . G 4 HOH A 39 939 66 HOH HOH . G 4 HOH A 40 940 68 HOH HOH . G 4 HOH A 41 941 69 HOH HOH . G 4 HOH A 42 942 75 HOH HOH . G 4 HOH A 43 943 76 HOH HOH . G 4 HOH A 44 944 77 HOH HOH . G 4 HOH A 45 945 78 HOH HOH . G 4 HOH A 46 946 81 HOH HOH . G 4 HOH A 47 947 83 HOH HOH . G 4 HOH A 48 948 86 HOH HOH . G 4 HOH A 49 949 87 HOH HOH . G 4 HOH A 50 950 88 HOH HOH . G 4 HOH A 51 951 89 HOH HOH . G 4 HOH A 52 952 92 HOH HOH . G 4 HOH A 53 953 93 HOH HOH . G 4 HOH A 54 954 94 HOH HOH . G 4 HOH A 55 955 95 HOH HOH . G 4 HOH A 56 956 104 HOH HOH . G 4 HOH A 57 957 107 HOH HOH . G 4 HOH A 58 958 108 HOH HOH . G 4 HOH A 59 959 127 HOH HOH . G 4 HOH A 60 960 128 HOH HOH . G 4 HOH A 61 961 132 HOH HOH . G 4 HOH A 62 962 134 HOH HOH . G 4 HOH A 63 963 135 HOH HOH . G 4 HOH A 64 964 136 HOH HOH . G 4 HOH A 65 965 140 HOH HOH . G 4 HOH A 66 966 145 HOH HOH . H 4 HOH B 1 901 1 HOH HOH . H 4 HOH B 2 902 2 HOH HOH . H 4 HOH B 3 903 3 HOH HOH . H 4 HOH B 4 904 5 HOH HOH . H 4 HOH B 5 905 8 HOH HOH . H 4 HOH B 6 906 9 HOH HOH . H 4 HOH B 7 907 11 HOH HOH . H 4 HOH B 8 908 12 HOH HOH . H 4 HOH B 9 909 20 HOH HOH . H 4 HOH B 10 910 23 HOH HOH . H 4 HOH B 11 911 26 HOH HOH . H 4 HOH B 12 912 28 HOH HOH . H 4 HOH B 13 913 29 HOH HOH . H 4 HOH B 14 914 33 HOH HOH . H 4 HOH B 15 915 36 HOH HOH . H 4 HOH B 16 916 39 HOH HOH . H 4 HOH B 17 917 41 HOH HOH . H 4 HOH B 18 918 48 HOH HOH . H 4 HOH B 19 919 49 HOH HOH . H 4 HOH B 20 920 58 HOH HOH . H 4 HOH B 21 921 59 HOH HOH . H 4 HOH B 22 922 64 HOH HOH . H 4 HOH B 23 923 70 HOH HOH . H 4 HOH B 24 924 72 HOH HOH . H 4 HOH B 25 925 73 HOH HOH . H 4 HOH B 26 926 80 HOH HOH . H 4 HOH B 27 927 82 HOH HOH . H 4 HOH B 28 928 96 HOH HOH . H 4 HOH B 29 929 98 HOH HOH . H 4 HOH B 30 930 101 HOH HOH . H 4 HOH B 31 931 102 HOH HOH . H 4 HOH B 32 932 103 HOH HOH . H 4 HOH B 33 933 106 HOH HOH . H 4 HOH B 34 934 109 HOH HOH . H 4 HOH B 35 935 110 HOH HOH . H 4 HOH B 36 936 112 HOH HOH . H 4 HOH B 37 937 114 HOH HOH . H 4 HOH B 38 938 119 HOH HOH . H 4 HOH B 39 939 123 HOH HOH . H 4 HOH B 40 940 124 HOH HOH . H 4 HOH B 41 941 125 HOH HOH . H 4 HOH B 42 942 144 HOH HOH . H 4 HOH B 43 943 149 HOH HOH . I 4 HOH C 1 101 129 HOH HOH . I 4 HOH C 2 102 139 HOH HOH . J 4 HOH D 1 101 115 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C 29M . . . F 3 -7.627 -15.536 70.045 1 35.13 ? C 29M 801 B 1 HETATM 2 F F 29M . . . F 3 -5.795 -22.312 73.823 1 30.75 ? F 29M 801 B 1 HETATM 3 N N 29M . . . F 3 -8.986 -18.686 67.853 1 32.84 ? N 29M 801 B 1 HETATM 4 O O 29M . . . F 3 -6.048 -21.263 69.166 1 27.21 ? O 29M 801 B 1 HETATM 5 S S 29M . . . F 3 -10.929 -15.353 66.64 1 46.31 ? S 29M 801 B 1 HETATM 6 C C1 29M . . . F 3 -8.207 -15.224 68.831 1 36.33 ? C1 29M 801 B 1 HETATM 7 N N1 29M . . . F 3 -10.343 -21.375 67.795 1 39.85 ? N1 29M 801 B 1 HETATM 8 O O1 29M . . . F 3 -11.211 -15.127 65.232 1 48.82 ? O1 29M 801 B 1 HETATM 9 C C2 29M . . . F 3 -8.732 -16.202 68.009 1 38.87 ? C2 29M 801 B 1 HETATM 10 N N2 29M . . . F 3 -9.291 -15.848 66.738 1 44.4 ? N2 29M 801 B 1 HETATM 11 O O2 29M . . . F 3 -11.762 -16.233 67.434 1 48.52 ? O2 29M 801 B 1 HETATM 12 C C3 29M . . . F 3 -8.606 -17.51 68.438 1 34.15 ? C3 29M 801 B 1 HETATM 13 C C4 29M . . . F 3 -8.636 -19.764 68.622 1 33.4 ? C4 29M 801 B 1 HETATM 14 C C5 29M . . . F 3 -8.008 -19.277 69.751 1 32.28 ? C5 29M 801 B 1 HETATM 15 C C6 29M . . . F 3 -8 -17.857 69.636 1 33.76 ? C6 29M 801 B 1 HETATM 16 C C7 29M . . . F 3 -7.516 -16.85 70.455 1 33.94 ? C7 29M 801 B 1 HETATM 17 C C8 29M . . . F 3 -7.414 -20.105 70.791 1 29.11 ? C8 29M 801 B 1 HETATM 18 C C9 29M . . . F 3 -7.798 -19.886 72.107 1 29.76 ? C9 29M 801 B 1 HETATM 19 C C10 29M . . . F 3 -7.262 -20.619 73.148 1 25.23 ? C10 29M 801 B 1 HETATM 20 C C11 29M . . . F 3 -6.319 -21.575 72.839 1 26.05 ? C11 29M 801 B 1 HETATM 21 C C12 29M . . . F 3 -5.904 -21.802 71.541 1 23.03 ? C12 29M 801 B 1 HETATM 22 C C13 29M . . . F 3 -6.447 -21.065 70.504 1 25.97 ? C13 29M 801 B 1 HETATM 23 C C14 29M . . . F 3 -5.019 -22.233 69.023 1 25.02 ? C14 29M 801 B 1 HETATM 24 C C15 29M . . . F 3 -8.943 -21.148 68.206 1 36.7 ? C15 29M 801 B 1 HETATM 25 C C16 29M . . . F 3 -10.492 -22.755 67.26 1 36.3 ? C16 29M 801 B 1 HETATM 26 C C17 29M . . . F 3 -11.332 -21.025 68.851 1 43.08 ? C17 29M 801 B 1 HETATM 27 C C18 29M . . . F 3 -12.681 -20.743 68.295 1 48.13 ? C18 29M 801 B 1 HETATM 28 C C19 29M . . . F 3 -12.834 -19.895 67.213 1 51.15 ? C19 29M 801 B 1 HETATM 29 C C20 29M . . . F 3 -14.096 -19.655 66.706 1 52.43 ? C20 29M 801 B 1 HETATM 30 C C21 29M . . . F 3 -15.2 -20.259 67.278 1 51.29 ? C21 29M 801 B 1 HETATM 31 C C22 29M . . . F 3 -15.047 -21.1 68.363 1 50.75 ? C22 29M 801 B 1 HETATM 32 C C23 29M . . . F 3 -13.786 -21.344 68.87 1 49.76 ? C23 29M 801 B 1 HETATM 33 C C24 29M . . . F 3 -10.927 -13.784 67.44 1 40.56 ? C24 29M 801 B 1 HETATM 34 C C25 29M . . . F 3 -7.093 -14.489 70.978 1 34.05 ? C25 29M 801 B 1 HETATM 35 C C26 29M . . . F 3 -5.974 -13.652 70.403 1 28.5 ? C26 29M 801 B 1 HETATM 36 C C27 29M . . . F 3 -8.195 -13.656 71.596 1 36.26 ? C27 29M 801 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 36 #