data_4MDE # _model_server_result.job_id OxPLK965PcIiY5pH7_OJTA _model_server_result.datetime_utc '2024-12-02 21:38:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4mde # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1001}' # _entry.id 4MDE # _exptl.entry_id 4MDE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 443.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4MDE _cell.length_a 54.44 _cell.length_b 73.12 _cell.length_c 119.04 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4MDE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L 1 1 A,C,E,F,I,K 2 1 B,D,G,H,J,L 2 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -x-1/2,-y,z+1/2 -1 0 0 0 -1 0 0 0 1 -27.22 0 59.52 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 23 A SER 22 1_555 F MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc2 E O1B GDP . A GDP 1001 1_555 F MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc3 F MG MG . A MG 1002 1_555 I O HOH . A HOH 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc4 F MG MG . A MG 1002 1_555 I O HOH . A HOH 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc5 F MG MG . A MG 1002 1_555 I O HOH . A HOH 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc6 F MG MG . A MG 1002 1_555 C OP3 DC 1 C DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc7 B OG SER 23 B SER 22 1_555 H MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc8 G O1B GDP . B GDP 1001 1_555 H MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc9 H MG MG . B MG 1002 1_555 J O HOH . B HOH 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc10 H MG MG . B MG 1002 1_555 J O HOH . B HOH 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc11 H MG MG . B MG 1002 1_555 J O HOH . B HOH 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc12 H MG MG . B MG 1002 1_555 D OP1 DC 1 D DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? # _chem_comp.formula 'C10 H15 N5 O11 P2' _chem_comp.formula_weight 443.201 _chem_comp.id GDP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-DIPHOSPHATE" _chem_comp.type 'rna linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B GDP doub 194 n n PB O2B GDP sing 195 n n PB O3B GDP sing 196 n n PB O3A GDP sing 197 n n O2B HOB2 GDP sing 198 n n O3B HOB3 GDP sing 199 n n O3A PA GDP sing 200 n n PA O1A GDP doub 201 n n PA O2A GDP sing 202 n n PA O5' GDP sing 203 n n O2A HOA2 GDP sing 204 n n O5' C5' GDP sing 205 n n C5' C4' GDP sing 206 n n C5' H5' GDP sing 207 n n C5' "H5''" GDP sing 208 n n C4' O4' GDP sing 209 n n C4' C3' GDP sing 210 n n C4' H4' GDP sing 211 n n O4' C1' GDP sing 212 n n C3' O3' GDP sing 213 n n C3' C2' GDP sing 214 n n C3' H3' GDP sing 215 n n O3' HO3' GDP sing 216 n n C2' O2' GDP sing 217 n n C2' C1' GDP sing 218 n n C2' H2' GDP sing 219 n n O2' HO2' GDP sing 220 n n C1' N9 GDP sing 221 n n C1' H1' GDP sing 222 n n N9 C8 GDP sing 223 n y N9 C4 GDP sing 224 n y C8 N7 GDP doub 225 n y C8 H8 GDP sing 226 n n N7 C5 GDP sing 227 n y C5 C6 GDP sing 228 n n C5 C4 GDP doub 229 n y C6 O6 GDP doub 230 n n C6 N1 GDP sing 231 n n N1 C2 GDP sing 232 n n N1 HN1 GDP sing 233 n n C2 N2 GDP sing 234 n n C2 N3 GDP doub 235 n n N2 HN21 GDP sing 236 n n N2 HN22 GDP sing 237 n n N3 C4 GDP sing 238 n n # _atom_sites.entry_id 4MDE _atom_sites.fract_transf_matrix[1][1] 0.018369 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013676 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008401 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GDP A 1 1001 1001 GDP GDP . F 4 MG A 1 1002 1002 MG MG . G 3 GDP B 1 1001 1001 GDP GDP . H 4 MG B 1 1002 1002 MG MG . I 5 HOH A 1 1101 1 HOH HOH . I 5 HOH A 2 1102 2 HOH HOH . I 5 HOH A 3 1103 3 HOH HOH . I 5 HOH A 4 1104 7 HOH HOH . I 5 HOH A 5 1105 8 HOH HOH . I 5 HOH A 6 1106 9 HOH HOH . I 5 HOH A 7 1107 11 HOH HOH . I 5 HOH A 8 1108 12 HOH HOH . I 5 HOH A 9 1109 13 HOH HOH . I 5 HOH A 10 1110 14 HOH HOH . I 5 HOH A 11 1111 15 HOH HOH . I 5 HOH A 12 1112 16 HOH HOH . I 5 HOH A 13 1113 18 HOH HOH . I 5 HOH A 14 1114 19 HOH HOH . I 5 HOH A 15 1115 24 HOH HOH . I 5 HOH A 16 1116 25 HOH HOH . I 5 HOH A 17 1117 26 HOH HOH . I 5 HOH A 18 1118 27 HOH HOH . I 5 HOH A 19 1119 28 HOH HOH . I 5 HOH A 20 1120 29 HOH HOH . I 5 HOH A 21 1121 30 HOH HOH . I 5 HOH A 22 1122 39 HOH HOH . I 5 HOH A 23 1123 40 HOH HOH . I 5 HOH A 24 1124 44 HOH HOH . I 5 HOH A 25 1125 45 HOH HOH . I 5 HOH A 26 1126 46 HOH HOH . I 5 HOH A 27 1127 48 HOH HOH . I 5 HOH A 28 1128 52 HOH HOH . I 5 HOH A 29 1129 56 HOH HOH . I 5 HOH A 30 1130 59 HOH HOH . I 5 HOH A 31 1131 60 HOH HOH . I 5 HOH A 32 1132 63 HOH HOH . I 5 HOH A 33 1133 65 HOH HOH . I 5 HOH A 34 1134 66 HOH HOH . I 5 HOH A 35 1135 67 HOH HOH . I 5 HOH A 36 1136 69 HOH HOH . I 5 HOH A 37 1137 70 HOH HOH . I 5 HOH A 38 1138 71 HOH HOH . I 5 HOH A 39 1139 72 HOH HOH . I 5 HOH A 40 1140 73 HOH HOH . I 5 HOH A 41 1141 75 HOH HOH . I 5 HOH A 42 1142 76 HOH HOH . I 5 HOH A 43 1143 78 HOH HOH . I 5 HOH A 44 1144 86 HOH HOH . I 5 HOH A 45 1145 87 HOH HOH . I 5 HOH A 46 1146 89 HOH HOH . I 5 HOH A 47 1147 91 HOH HOH . I 5 HOH A 48 1148 98 HOH HOH . I 5 HOH A 49 1149 99 HOH HOH . I 5 HOH A 50 1150 103 HOH HOH . I 5 HOH A 51 1151 104 HOH HOH . I 5 HOH A 52 1152 106 HOH HOH . I 5 HOH A 53 1153 107 HOH HOH . I 5 HOH A 54 1154 108 HOH HOH . I 5 HOH A 55 1155 109 HOH HOH . I 5 HOH A 56 1156 110 HOH HOH . I 5 HOH A 57 1157 111 HOH HOH . I 5 HOH A 58 1158 114 HOH HOH . I 5 HOH A 59 1159 116 HOH HOH . I 5 HOH A 60 1160 117 HOH HOH . I 5 HOH A 61 1161 121 HOH HOH . I 5 HOH A 62 1162 122 HOH HOH . I 5 HOH A 63 1163 123 HOH HOH . I 5 HOH A 64 1164 127 HOH HOH . I 5 HOH A 65 1165 134 HOH HOH . I 5 HOH A 66 1166 137 HOH HOH . I 5 HOH A 67 1167 139 HOH HOH . I 5 HOH A 68 1168 141 HOH HOH . I 5 HOH A 69 1169 142 HOH HOH . I 5 HOH A 70 1170 145 HOH HOH . I 5 HOH A 71 1171 147 HOH HOH . I 5 HOH A 72 1172 149 HOH HOH . I 5 HOH A 73 1173 151 HOH HOH . I 5 HOH A 74 1174 153 HOH HOH . I 5 HOH A 75 1175 157 HOH HOH . I 5 HOH A 76 1176 158 HOH HOH . I 5 HOH A 77 1177 159 HOH HOH . I 5 HOH A 78 1178 160 HOH HOH . I 5 HOH A 79 1179 161 HOH HOH . I 5 HOH A 80 1180 163 HOH HOH . I 5 HOH A 81 1181 164 HOH HOH . I 5 HOH A 82 1182 168 HOH HOH . I 5 HOH A 83 1183 172 HOH HOH . I 5 HOH A 84 1184 174 HOH HOH . I 5 HOH A 85 1185 178 HOH HOH . I 5 HOH A 86 1186 181 HOH HOH . I 5 HOH A 87 1187 182 HOH HOH . I 5 HOH A 88 1188 185 HOH HOH . I 5 HOH A 89 1189 186 HOH HOH . I 5 HOH A 90 1190 189 HOH HOH . I 5 HOH A 91 1191 190 HOH HOH . I 5 HOH A 92 1192 193 HOH HOH . I 5 HOH A 93 1193 195 HOH HOH . I 5 HOH A 94 1194 198 HOH HOH . I 5 HOH A 95 1195 200 HOH HOH . I 5 HOH A 96 1196 201 HOH HOH . I 5 HOH A 97 1197 202 HOH HOH . I 5 HOH A 98 1198 203 HOH HOH . I 5 HOH A 99 1199 204 HOH HOH . I 5 HOH A 100 1200 205 HOH HOH . I 5 HOH A 101 1201 209 HOH HOH . I 5 HOH A 102 1202 211 HOH HOH . I 5 HOH A 103 1203 212 HOH HOH . I 5 HOH A 104 1204 218 HOH HOH . I 5 HOH A 105 1205 219 HOH HOH . I 5 HOH A 106 1206 222 HOH HOH . I 5 HOH A 107 1207 223 HOH HOH . I 5 HOH A 108 1208 224 HOH HOH . I 5 HOH A 109 1209 226 HOH HOH . I 5 HOH A 110 1210 227 HOH HOH . I 5 HOH A 111 1211 228 HOH HOH . I 5 HOH A 112 1212 230 HOH HOH . I 5 HOH A 113 1213 238 HOH HOH . I 5 HOH A 114 1214 240 HOH HOH . I 5 HOH A 115 1215 241 HOH HOH . I 5 HOH A 116 1216 242 HOH HOH . I 5 HOH A 117 1217 244 HOH HOH . I 5 HOH A 118 1218 247 HOH HOH . I 5 HOH A 119 1219 249 HOH HOH . I 5 HOH A 120 1220 251 HOH HOH . I 5 HOH A 121 1221 252 HOH HOH . I 5 HOH A 122 1222 256 HOH HOH . I 5 HOH A 123 1223 257 HOH HOH . I 5 HOH A 124 1224 260 HOH HOH . I 5 HOH A 125 1225 262 HOH HOH . I 5 HOH A 126 1226 263 HOH HOH . I 5 HOH A 127 1227 269 HOH HOH . I 5 HOH A 128 1228 270 HOH HOH . I 5 HOH A 129 1229 271 HOH HOH . I 5 HOH A 130 1230 273 HOH HOH . I 5 HOH A 131 1231 275 HOH HOH . I 5 HOH A 132 1232 276 HOH HOH . I 5 HOH A 133 1233 277 HOH HOH . I 5 HOH A 134 1234 278 HOH HOH . I 5 HOH A 135 1235 279 HOH HOH . I 5 HOH A 136 1236 282 HOH HOH . I 5 HOH A 137 1237 283 HOH HOH . I 5 HOH A 138 1238 284 HOH HOH . I 5 HOH A 139 1239 285 HOH HOH . I 5 HOH A 140 1240 286 HOH HOH . I 5 HOH A 141 1241 289 HOH HOH . I 5 HOH A 142 1242 291 HOH HOH . I 5 HOH A 143 1243 292 HOH HOH . I 5 HOH A 144 1244 293 HOH HOH . I 5 HOH A 145 1245 298 HOH HOH . I 5 HOH A 146 1246 308 HOH HOH . I 5 HOH A 147 1247 309 HOH HOH . I 5 HOH A 148 1248 314 HOH HOH . I 5 HOH A 149 1249 315 HOH HOH . I 5 HOH A 150 1250 316 HOH HOH . I 5 HOH A 151 1251 317 HOH HOH . I 5 HOH A 152 1252 321 HOH HOH . I 5 HOH A 153 1253 323 HOH HOH . I 5 HOH A 154 1254 328 HOH HOH . I 5 HOH A 155 1255 329 HOH HOH . I 5 HOH A 156 1256 334 HOH HOH . I 5 HOH A 157 1257 337 HOH HOH . I 5 HOH A 158 1258 341 HOH HOH . I 5 HOH A 159 1259 342 HOH HOH . I 5 HOH A 160 1260 345 HOH HOH . I 5 HOH A 161 1261 347 HOH HOH . I 5 HOH A 162 1262 348 HOH HOH . I 5 HOH A 163 1263 349 HOH HOH . I 5 HOH A 164 1264 352 HOH HOH . I 5 HOH A 165 1265 354 HOH HOH . I 5 HOH A 166 1266 356 HOH HOH . I 5 HOH A 167 1267 358 HOH HOH . I 5 HOH A 168 1268 359 HOH HOH . I 5 HOH A 169 1269 361 HOH HOH . I 5 HOH A 170 1270 365 HOH HOH . I 5 HOH A 171 1271 367 HOH HOH . I 5 HOH A 172 1272 368 HOH HOH . I 5 HOH A 173 1273 371 HOH HOH . I 5 HOH A 174 1274 378 HOH HOH . I 5 HOH A 175 1275 380 HOH HOH . I 5 HOH A 176 1276 382 HOH HOH . I 5 HOH A 177 1277 383 HOH HOH . I 5 HOH A 178 1278 384 HOH HOH . I 5 HOH A 179 1279 387 HOH HOH . I 5 HOH A 180 1280 388 HOH HOH . I 5 HOH A 181 1281 391 HOH HOH . I 5 HOH A 182 1282 394 HOH HOH . I 5 HOH A 183 1283 395 HOH HOH . I 5 HOH A 184 1284 403 HOH HOH . I 5 HOH A 185 1285 404 HOH HOH . I 5 HOH A 186 1286 405 HOH HOH . I 5 HOH A 187 1287 406 HOH HOH . I 5 HOH A 188 1288 408 HOH HOH . I 5 HOH A 189 1289 409 HOH HOH . I 5 HOH A 190 1290 411 HOH HOH . I 5 HOH A 191 1291 412 HOH HOH . I 5 HOH A 192 1292 414 HOH HOH . I 5 HOH A 193 1293 417 HOH HOH . I 5 HOH A 194 1294 418 HOH HOH . I 5 HOH A 195 1295 419 HOH HOH . I 5 HOH A 196 1296 420 HOH HOH . I 5 HOH A 197 1297 421 HOH HOH . I 5 HOH A 198 1298 425 HOH HOH . I 5 HOH A 199 1299 429 HOH HOH . I 5 HOH A 200 1300 430 HOH HOH . I 5 HOH A 201 1301 437 HOH HOH . I 5 HOH A 202 1302 440 HOH HOH . J 5 HOH B 1 1101 4 HOH HOH . J 5 HOH B 2 1102 5 HOH HOH . J 5 HOH B 3 1103 6 HOH HOH . J 5 HOH B 4 1104 10 HOH HOH . J 5 HOH B 5 1105 21 HOH HOH . J 5 HOH B 6 1106 23 HOH HOH . J 5 HOH B 7 1107 31 HOH HOH . J 5 HOH B 8 1108 32 HOH HOH . J 5 HOH B 9 1109 35 HOH HOH . J 5 HOH B 10 1110 37 HOH HOH . J 5 HOH B 11 1111 38 HOH HOH . J 5 HOH B 12 1112 41 HOH HOH . J 5 HOH B 13 1113 42 HOH HOH . J 5 HOH B 14 1114 43 HOH HOH . J 5 HOH B 15 1115 47 HOH HOH . J 5 HOH B 16 1116 49 HOH HOH . J 5 HOH B 17 1117 50 HOH HOH . J 5 HOH B 18 1118 51 HOH HOH . J 5 HOH B 19 1119 54 HOH HOH . J 5 HOH B 20 1120 55 HOH HOH . J 5 HOH B 21 1121 57 HOH HOH . J 5 HOH B 22 1122 58 HOH HOH . J 5 HOH B 23 1123 62 HOH HOH . J 5 HOH B 24 1124 64 HOH HOH . J 5 HOH B 25 1125 68 HOH HOH . J 5 HOH B 26 1126 74 HOH HOH . J 5 HOH B 27 1127 77 HOH HOH . J 5 HOH B 28 1128 79 HOH HOH . J 5 HOH B 29 1129 80 HOH HOH . J 5 HOH B 30 1130 81 HOH HOH . J 5 HOH B 31 1131 82 HOH HOH . J 5 HOH B 32 1132 83 HOH HOH . J 5 HOH B 33 1133 84 HOH HOH . J 5 HOH B 34 1134 85 HOH HOH . J 5 HOH B 35 1135 88 HOH HOH . J 5 HOH B 36 1136 90 HOH HOH . J 5 HOH B 37 1137 92 HOH HOH . J 5 HOH B 38 1138 93 HOH HOH . J 5 HOH B 39 1139 95 HOH HOH . J 5 HOH B 40 1140 96 HOH HOH . J 5 HOH B 41 1141 97 HOH HOH . J 5 HOH B 42 1142 100 HOH HOH . J 5 HOH B 43 1143 101 HOH HOH . J 5 HOH B 44 1144 102 HOH HOH . J 5 HOH B 45 1145 112 HOH HOH . J 5 HOH B 46 1146 115 HOH HOH . J 5 HOH B 47 1147 118 HOH HOH . J 5 HOH B 48 1148 119 HOH HOH . J 5 HOH B 49 1149 120 HOH HOH . J 5 HOH B 50 1150 125 HOH HOH . J 5 HOH B 51 1151 126 HOH HOH . J 5 HOH B 52 1152 128 HOH HOH . J 5 HOH B 53 1153 129 HOH HOH . J 5 HOH B 54 1154 130 HOH HOH . J 5 HOH B 55 1155 131 HOH HOH . J 5 HOH B 56 1156 132 HOH HOH . J 5 HOH B 57 1157 135 HOH HOH . J 5 HOH B 58 1158 138 HOH HOH . J 5 HOH B 59 1159 143 HOH HOH . J 5 HOH B 60 1160 144 HOH HOH . J 5 HOH B 61 1161 148 HOH HOH . J 5 HOH B 62 1162 150 HOH HOH . J 5 HOH B 63 1163 154 HOH HOH . J 5 HOH B 64 1164 155 HOH HOH . J 5 HOH B 65 1165 156 HOH HOH . J 5 HOH B 66 1166 162 HOH HOH . J 5 HOH B 67 1167 167 HOH HOH . J 5 HOH B 68 1168 169 HOH HOH . J 5 HOH B 69 1169 175 HOH HOH . J 5 HOH B 70 1170 176 HOH HOH . J 5 HOH B 71 1171 177 HOH HOH . J 5 HOH B 72 1172 179 HOH HOH . J 5 HOH B 73 1173 180 HOH HOH . J 5 HOH B 74 1174 183 HOH HOH . J 5 HOH B 75 1175 184 HOH HOH . J 5 HOH B 76 1176 187 HOH HOH . J 5 HOH B 77 1177 191 HOH HOH . J 5 HOH B 78 1178 192 HOH HOH . J 5 HOH B 79 1179 196 HOH HOH . J 5 HOH B 80 1180 197 HOH HOH . J 5 HOH B 81 1181 199 HOH HOH . J 5 HOH B 82 1182 208 HOH HOH . J 5 HOH B 83 1183 210 HOH HOH . J 5 HOH B 84 1184 214 HOH HOH . J 5 HOH B 85 1185 215 HOH HOH . J 5 HOH B 86 1186 216 HOH HOH . J 5 HOH B 87 1187 217 HOH HOH . J 5 HOH B 88 1188 220 HOH HOH . J 5 HOH B 89 1189 225 HOH HOH . J 5 HOH B 90 1190 229 HOH HOH . J 5 HOH B 91 1191 231 HOH HOH . J 5 HOH B 92 1192 232 HOH HOH . J 5 HOH B 93 1193 233 HOH HOH . J 5 HOH B 94 1194 234 HOH HOH . J 5 HOH B 95 1195 235 HOH HOH . J 5 HOH B 96 1196 236 HOH HOH . J 5 HOH B 97 1197 237 HOH HOH . J 5 HOH B 98 1198 243 HOH HOH . J 5 HOH B 99 1199 245 HOH HOH . J 5 HOH B 100 1200 246 HOH HOH . J 5 HOH B 101 1201 248 HOH HOH . J 5 HOH B 102 1202 250 HOH HOH . J 5 HOH B 103 1203 253 HOH HOH . J 5 HOH B 104 1204 254 HOH HOH . J 5 HOH B 105 1205 255 HOH HOH . J 5 HOH B 106 1206 261 HOH HOH . J 5 HOH B 107 1207 264 HOH HOH . J 5 HOH B 108 1208 265 HOH HOH . J 5 HOH B 109 1209 266 HOH HOH . J 5 HOH B 110 1210 267 HOH HOH . J 5 HOH B 111 1211 268 HOH HOH . J 5 HOH B 112 1212 274 HOH HOH . J 5 HOH B 113 1213 280 HOH HOH . J 5 HOH B 114 1214 281 HOH HOH . J 5 HOH B 115 1215 287 HOH HOH . J 5 HOH B 116 1216 288 HOH HOH . J 5 HOH B 117 1217 290 HOH HOH . J 5 HOH B 118 1218 294 HOH HOH . J 5 HOH B 119 1219 296 HOH HOH . J 5 HOH B 120 1220 297 HOH HOH . J 5 HOH B 121 1221 299 HOH HOH . J 5 HOH B 122 1222 300 HOH HOH . J 5 HOH B 123 1223 301 HOH HOH . J 5 HOH B 124 1224 302 HOH HOH . J 5 HOH B 125 1225 303 HOH HOH . J 5 HOH B 126 1226 304 HOH HOH . J 5 HOH B 127 1227 305 HOH HOH . J 5 HOH B 128 1228 306 HOH HOH . J 5 HOH B 129 1229 313 HOH HOH . J 5 HOH B 130 1230 318 HOH HOH . J 5 HOH B 131 1231 319 HOH HOH . J 5 HOH B 132 1232 320 HOH HOH . J 5 HOH B 133 1233 322 HOH HOH . J 5 HOH B 134 1234 324 HOH HOH . J 5 HOH B 135 1235 325 HOH HOH . J 5 HOH B 136 1236 326 HOH HOH . J 5 HOH B 137 1237 327 HOH HOH . J 5 HOH B 138 1238 330 HOH HOH . J 5 HOH B 139 1239 331 HOH HOH . J 5 HOH B 140 1240 332 HOH HOH . J 5 HOH B 141 1241 333 HOH HOH . J 5 HOH B 142 1242 335 HOH HOH . J 5 HOH B 143 1243 336 HOH HOH . J 5 HOH B 144 1244 340 HOH HOH . J 5 HOH B 145 1245 343 HOH HOH . J 5 HOH B 146 1246 346 HOH HOH . J 5 HOH B 147 1247 350 HOH HOH . J 5 HOH B 148 1248 351 HOH HOH . J 5 HOH B 149 1249 353 HOH HOH . J 5 HOH B 150 1250 357 HOH HOH . J 5 HOH B 151 1251 363 HOH HOH . J 5 HOH B 152 1252 366 HOH HOH . J 5 HOH B 153 1253 369 HOH HOH . J 5 HOH B 154 1254 370 HOH HOH . J 5 HOH B 155 1255 372 HOH HOH . J 5 HOH B 156 1256 373 HOH HOH . J 5 HOH B 157 1257 375 HOH HOH . J 5 HOH B 158 1258 377 HOH HOH . J 5 HOH B 159 1259 379 HOH HOH . J 5 HOH B 160 1260 386 HOH HOH . J 5 HOH B 161 1261 389 HOH HOH . J 5 HOH B 162 1262 393 HOH HOH . J 5 HOH B 163 1263 396 HOH HOH . J 5 HOH B 164 1264 397 HOH HOH . J 5 HOH B 165 1265 398 HOH HOH . J 5 HOH B 166 1266 399 HOH HOH . J 5 HOH B 167 1267 400 HOH HOH . J 5 HOH B 168 1268 401 HOH HOH . J 5 HOH B 169 1269 402 HOH HOH . J 5 HOH B 170 1270 407 HOH HOH . J 5 HOH B 171 1271 410 HOH HOH . J 5 HOH B 172 1272 415 HOH HOH . J 5 HOH B 173 1273 422 HOH HOH . J 5 HOH B 174 1274 423 HOH HOH . J 5 HOH B 175 1275 424 HOH HOH . J 5 HOH B 176 1276 426 HOH HOH . J 5 HOH B 177 1277 427 HOH HOH . J 5 HOH B 178 1278 431 HOH HOH . J 5 HOH B 179 1279 432 HOH HOH . J 5 HOH B 180 1280 433 HOH HOH . J 5 HOH B 181 1281 434 HOH HOH . K 5 HOH C 1 101 17 HOH HOH . K 5 HOH C 2 102 20 HOH HOH . K 5 HOH C 3 103 33 HOH HOH . K 5 HOH C 4 104 36 HOH HOH . K 5 HOH C 5 105 94 HOH HOH . K 5 HOH C 6 106 113 HOH HOH . K 5 HOH C 7 107 133 HOH HOH . K 5 HOH C 8 108 136 HOH HOH . K 5 HOH C 9 109 140 HOH HOH . K 5 HOH C 10 110 146 HOH HOH . K 5 HOH C 11 111 165 HOH HOH . K 5 HOH C 12 112 166 HOH HOH . K 5 HOH C 13 113 171 HOH HOH . K 5 HOH C 14 114 194 HOH HOH . K 5 HOH C 15 115 206 HOH HOH . K 5 HOH C 16 116 207 HOH HOH . K 5 HOH C 17 117 295 HOH HOH . K 5 HOH C 18 118 310 HOH HOH . K 5 HOH C 19 119 311 HOH HOH . K 5 HOH C 20 120 312 HOH HOH . K 5 HOH C 21 121 338 HOH HOH . K 5 HOH C 22 122 374 HOH HOH . K 5 HOH C 23 123 381 HOH HOH . K 5 HOH C 24 124 385 HOH HOH . K 5 HOH C 25 125 390 HOH HOH . K 5 HOH C 26 126 392 HOH HOH . K 5 HOH C 27 127 413 HOH HOH . K 5 HOH C 28 128 435 HOH HOH . K 5 HOH C 29 129 436 HOH HOH . K 5 HOH C 30 130 439 HOH HOH . L 5 HOH D 1 101 22 HOH HOH . L 5 HOH D 2 102 34 HOH HOH . L 5 HOH D 3 103 53 HOH HOH . L 5 HOH D 4 104 61 HOH HOH . L 5 HOH D 5 105 105 HOH HOH . L 5 HOH D 6 106 124 HOH HOH . L 5 HOH D 7 107 152 HOH HOH . L 5 HOH D 8 108 170 HOH HOH . L 5 HOH D 9 109 173 HOH HOH . L 5 HOH D 10 110 188 HOH HOH . L 5 HOH D 11 111 213 HOH HOH . L 5 HOH D 12 112 221 HOH HOH . L 5 HOH D 13 113 239 HOH HOH . L 5 HOH D 14 114 258 HOH HOH . L 5 HOH D 15 115 259 HOH HOH . L 5 HOH D 16 116 272 HOH HOH . L 5 HOH D 17 117 307 HOH HOH . L 5 HOH D 18 118 339 HOH HOH . L 5 HOH D 19 119 344 HOH HOH . L 5 HOH D 20 120 355 HOH HOH . L 5 HOH D 21 121 360 HOH HOH . L 5 HOH D 22 122 362 HOH HOH . L 5 HOH D 23 123 364 HOH HOH . L 5 HOH D 24 124 376 HOH HOH . L 5 HOH D 25 125 416 HOH HOH . L 5 HOH D 26 126 428 HOH HOH . L 5 HOH D 27 127 438 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB GDP . . . G 3 -13.039 16.927 -45.789 1 16.08 ? PB GDP 1001 B 1 HETATM 2 O O1B GDP . . . G 3 -12.7 15.594 -46.396 1 14.81 ? O1B GDP 1001 B 1 HETATM 3 O O2B GDP . . . G 3 -13.918 16.745 -44.57 1 13.61 ? O2B GDP 1001 B 1 HETATM 4 O O3B GDP . . . G 3 -13.729 17.815 -46.784 1 17.69 ? O3B GDP 1001 B 1 HETATM 5 O O3A GDP . . . G 3 -11.719 17.683 -45.28 1 18.34 ? O3A GDP 1001 B 1 HETATM 6 P PA GDP . . . G 3 -10.286 17.716 -45.994 1 18.8 ? PA GDP 1001 B 1 HETATM 7 O O1A GDP . . . G 3 -10.353 17.582 -47.494 1 17.98 ? O1A GDP 1001 B 1 HETATM 8 O O2A GDP . . . G 3 -9.36 16.708 -45.361 1 20.01 ? O2A GDP 1001 B 1 HETATM 9 O O5' GDP . . . G 3 -9.811 19.193 -45.575 1 19.57 ? O5' GDP 1001 B 1 HETATM 10 C C5' GDP . . . G 3 -10.413 20.329 -46.206 1 24.24 ? C5' GDP 1001 B 1 HETATM 11 C C4' GDP . . . G 3 -9.421 21.48 -46.195 1 23.2 ? C4' GDP 1001 B 1 HETATM 12 O O4' GDP . . . G 3 -9.094 21.782 -44.84 1 21.46 ? O4' GDP 1001 B 1 HETATM 13 C C3' GDP . . . G 3 -8.143 21.067 -46.898 1 26.45 ? C3' GDP 1001 B 1 HETATM 14 O O3' GDP . . . G 3 -7.689 22.154 -47.711 1 26.89 ? O3' GDP 1001 B 1 HETATM 15 C C2' GDP . . . G 3 -7.165 20.811 -45.773 1 23.54 ? C2' GDP 1001 B 1 HETATM 16 O O2' GDP . . . G 3 -5.823 21.133 -46.155 1 26.98 ? O2' GDP 1001 B 1 HETATM 17 C C1' GDP . . . G 3 -7.689 21.659 -44.624 1 25.75 ? C1' GDP 1001 B 1 HETATM 18 N N9 GDP . . . G 3 -7.459 20.934 -43.355 1 27.55 ? N9 GDP 1001 B 1 HETATM 19 C C8 GDP . . . G 3 -7.779 19.643 -43.139 1 28.76 ? C8 GDP 1001 B 1 HETATM 20 N N7 GDP . . . G 3 -7.443 19.262 -41.881 1 31.96 ? N7 GDP 1001 B 1 HETATM 21 C C5 GDP . . . G 3 -6.901 20.33 -41.272 1 29 ? C5 GDP 1001 B 1 HETATM 22 C C6 GDP . . . G 3 -6.336 20.603 -39.934 1 41.23 ? C6 GDP 1001 B 1 HETATM 23 O O6 GDP . . . G 3 -6.303 19.693 -39.075 1 44.29 ? O6 GDP 1001 B 1 HETATM 24 N N1 GDP . . . G 3 -5.872 21.838 -39.689 1 32.87 ? N1 GDP 1001 B 1 HETATM 25 C C2 GDP . . . G 3 -5.912 22.81 -40.625 1 36.53 ? C2 GDP 1001 B 1 HETATM 26 N N2 GDP . . . G 3 -5.428 24.037 -40.315 1 40.98 ? N2 GDP 1001 B 1 HETATM 27 N N3 GDP . . . G 3 -6.414 22.627 -41.876 1 37.52 ? N3 GDP 1001 B 1 HETATM 28 C C4 GDP . . . G 3 -6.912 21.428 -42.246 1 33.33 ? C4 GDP 1001 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 37 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 28 #