data_4MDK # _model_server_result.job_id Pw16WyPMOMNORRsF7xcj2g _model_server_result.datetime_utc '2025-07-01 20:56:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4mdk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":201}' # _entry.id 4MDK # _exptl.entry_id 4MDK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 442.29 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "4,5-dideoxy-5-(3',5'-dichlorobiphenyl-4-yl)-4-[(methoxyacetyl)amino]-L-arabinonic acid" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 71.89 _cell.angle_beta 79.63 _cell.angle_gamma 81.61 _cell.entry_id 4MDK _cell.length_a 55.403 _cell.length_b 72.22 _cell.length_c 75.912 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4MDK _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 ? dimeric 2 author_defined_assembly 3 ? dimeric 2 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,I,M,Q 1 1 B,F,J,N,R 2 1 C,G,K,O 3 1 D,H,L,P,S 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N # _chem_comp.formula 'C20 H21 Cl2 N O6' _chem_comp.formula_weight 442.29 _chem_comp.id U94 _chem_comp.mon_nstd_flag . _chem_comp.name "4,5-dideoxy-5-(3',5'-dichlorobiphenyl-4-yl)-4-[(methoxyacetyl)amino]-L-arabinonic acid" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 O1 U94 sing 358 n n O1 HO1 U94 sing 359 n n C3 C2 U94 sing 360 n n C2 O4 U94 doub 361 n n O8 C3 U94 sing 362 n n C3 C5 U94 sing 363 n n C3 H3 U94 sing 364 n n O9 C5 U94 sing 365 n n C5 C6 U94 sing 366 n n C5 H5 U94 sing 367 n n C7 C6 U94 sing 368 n n C6 N10 U94 sing 369 n n C6 H6 U94 sing 370 n n C7 C16 U94 sing 371 n n C7 H7 U94 sing 372 n n C7 H7A U94 sing 373 n n O8 HO8 U94 sing 374 n n O9 HO9 U94 sing 375 n n N10 C11 U94 sing 376 n n N10 HN10 U94 sing 377 n n O12 C11 U94 doub 378 n n C11 C13 U94 sing 379 n n C13 O14 U94 sing 380 n n C13 H13 U94 sing 381 n n C13 H13A U94 sing 382 n n C15 O14 U94 sing 383 n n C15 H15 U94 sing 384 n n C15 H15A U94 sing 385 n n C15 H15B U94 sing 386 n n C17 C16 U94 doub 387 n y C16 C21 U94 sing 388 n y C18 C17 U94 sing 389 n y C17 H17 U94 sing 390 n n C18 C19 U94 doub 391 n y C18 H18 U94 sing 392 n n C22 C19 U94 sing 393 n y C19 C20 U94 sing 394 n y C20 C21 U94 doub 395 n y C20 H20 U94 sing 396 n n C21 H21 U94 sing 397 n n C23 C22 U94 doub 398 n y C22 C27 U94 sing 399 n y C24 C23 U94 sing 400 n y C23 H23 U94 sing 401 n n CL29 C24 U94 sing 402 n n C24 C25 U94 doub 403 n y C25 C26 U94 sing 404 n y C25 H25 U94 sing 405 n n C26 C27 U94 doub 406 n y C26 CL28 U94 sing 407 n n C27 H27 U94 sing 408 n n # _atom_sites.entry_id 4MDK _atom_sites.fract_transf_matrix[1][1] 0.01805 _atom_sites.fract_transf_matrix[1][2] -0.002662 _atom_sites.fract_transf_matrix[1][3] -0.002639 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013996 _atom_sites.fract_transf_matrix[2][3] -0.004281 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014004 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 U94 A 1 201 1 U94 MOL . J 3 U94 B 1 201 1 U94 MOL . K 3 U94 C 1 201 1 U94 MOL . L 3 U94 D 1 201 1 U94 MOL . M 4 HOH A 1 301 8 HOH HOH . M 4 HOH A 2 302 15 HOH HOH . M 4 HOH A 3 303 24 HOH HOH . M 4 HOH A 4 304 28 HOH HOH . M 4 HOH A 5 305 32 HOH HOH . M 4 HOH A 6 306 34 HOH HOH . M 4 HOH A 7 307 39 HOH HOH . M 4 HOH A 8 308 42 HOH HOH . M 4 HOH A 9 309 43 HOH HOH . N 4 HOH B 1 301 3 HOH HOH . N 4 HOH B 2 302 6 HOH HOH . N 4 HOH B 3 303 9 HOH HOH . N 4 HOH B 4 304 21 HOH HOH . N 4 HOH B 5 305 25 HOH HOH . N 4 HOH B 6 306 27 HOH HOH . N 4 HOH B 7 307 29 HOH HOH . N 4 HOH B 8 308 31 HOH HOH . N 4 HOH B 9 309 41 HOH HOH . N 4 HOH B 10 310 44 HOH HOH . N 4 HOH B 11 311 45 HOH HOH . O 4 HOH C 1 301 1 HOH HOH . O 4 HOH C 2 302 2 HOH HOH . O 4 HOH C 3 303 10 HOH HOH . O 4 HOH C 4 304 12 HOH HOH . O 4 HOH C 5 305 13 HOH HOH . O 4 HOH C 6 306 14 HOH HOH . O 4 HOH C 7 307 16 HOH HOH . O 4 HOH C 8 308 17 HOH HOH . O 4 HOH C 9 309 26 HOH HOH . O 4 HOH C 10 310 33 HOH HOH . O 4 HOH C 11 311 37 HOH HOH . O 4 HOH C 12 312 38 HOH HOH . P 4 HOH D 1 301 5 HOH HOH . P 4 HOH D 2 302 7 HOH HOH . P 4 HOH D 3 303 11 HOH HOH . P 4 HOH D 4 304 19 HOH HOH . P 4 HOH D 5 305 20 HOH HOH . P 4 HOH D 6 306 22 HOH HOH . P 4 HOH D 7 307 23 HOH HOH . P 4 HOH D 8 308 30 HOH HOH . P 4 HOH D 9 309 35 HOH HOH . P 4 HOH D 10 310 46 HOH HOH . Q 4 HOH E 1 101 18 HOH HOH . R 4 HOH F 1 101 40 HOH HOH . S 4 HOH H 1 101 4 HOH HOH . S 4 HOH H 2 102 36 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 U94 . . . K 3 36.729 -31.126 32.965 1 61.41 ? O1 U94 201 C 1 HETATM 2 C C2 U94 . . . K 3 36.547 -30.741 31.788 1 66.75 ? C2 U94 201 C 1 HETATM 3 C C3 U94 . . . K 3 37.718 -30.031 31.101 1 63.99 ? C3 U94 201 C 1 HETATM 4 O O4 U94 . . . K 3 35.492 -30.869 31.122 1 74.9 ? O4 U94 201 C 1 HETATM 5 C C5 U94 . . . K 3 37.289 -28.616 30.731 1 60.76 ? C5 U94 201 C 1 HETATM 6 C C6 U94 . . . K 3 38.427 -27.857 30.067 1 54.98 ? C6 U94 201 C 1 HETATM 7 C C7 U94 . . . K 3 38.076 -26.393 29.737 1 51.85 ? C7 U94 201 C 1 HETATM 8 O O8 U94 . . . K 3 38.825 -29.962 32.006 1 64.36 ? O8 U94 201 C 1 HETATM 9 O O9 U94 . . . K 3 37.065 -27.954 31.976 1 62.89 ? O9 U94 201 C 1 HETATM 10 N N10 U94 . . . K 3 38.961 -28.521 28.875 1 53.82 ? N10 U94 201 C 1 HETATM 11 C C11 U94 . . . K 3 40.133 -29.134 28.905 1 50.54 ? C11 U94 201 C 1 HETATM 12 O O12 U94 . . . K 3 40.872 -29.11 29.888 1 50.07 ? O12 U94 201 C 1 HETATM 13 C C13 U94 . . . K 3 40.626 -29.803 27.619 1 49.53 ? C13 U94 201 C 1 HETATM 14 O O14 U94 . . . K 3 39.669 -30.066 26.561 1 49.7 ? O14 U94 201 C 1 HETATM 15 C C15 U94 . . . K 3 38.731 -31.073 26.871 1 45.9 ? C15 U94 201 C 1 HETATM 16 C C16 U94 . . . K 3 39.315 -25.536 29.424 1 49.83 ? C16 U94 201 C 1 HETATM 17 C C17 U94 . . . K 3 39.579 -24.565 30.379 1 50.2 ? C17 U94 201 C 1 HETATM 18 C C18 U94 . . . K 3 40.661 -23.71 30.262 1 49.25 ? C18 U94 201 C 1 HETATM 19 C C19 U94 . . . K 3 41.471 -23.756 29.137 1 50.63 ? C19 U94 201 C 1 HETATM 20 C C20 U94 . . . K 3 41.298 -24.819 28.251 1 48.46 ? C20 U94 201 C 1 HETATM 21 C C21 U94 . . . K 3 40.175 -25.656 28.328 1 50.96 ? C21 U94 201 C 1 HETATM 22 C C22 U94 . . . K 3 42.598 -22.944 29.193 1 53.8 ? C22 U94 201 C 1 HETATM 23 C C23 U94 . . . K 3 42.489 -21.65 29.703 1 53.94 ? C23 U94 201 C 1 HETATM 24 C C24 U94 . . . K 3 43.606 -20.815 29.718 1 53.39 ? C24 U94 201 C 1 HETATM 25 C C25 U94 . . . K 3 44.813 -21.233 29.169 1 51.66 ? C25 U94 201 C 1 HETATM 26 C C26 U94 . . . K 3 44.901 -22.503 28.61 1 51.92 ? C26 U94 201 C 1 HETATM 27 C C27 U94 . . . K 3 43.776 -23.322 28.558 1 54.14 ? C27 U94 201 C 1 HETATM 28 CL CL28 U94 . . . K 3 46.393 -23.036 27.921 1 54.43 ? CL28 U94 201 C 1 HETATM 29 CL CL29 U94 . . . K 3 43.523 -19.237 30.41 1 61.55 ? CL29 U94 201 C 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 29 #