data_4MDM # _model_server_result.job_id 6G74ztVpsPlhdK-8yFHiwg _model_server_result.datetime_utc '2024-11-17 10:53:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4mdm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 4MDM # _exptl.entry_id 4MDM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 230.448 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 7-(sulfamoylamino)methyl-7,8-dicarba-nido-undecaborane _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.17 _cell.angle_gamma 90 _cell.entry_id 4MDM _cell.length_a 42.01 _cell.length_b 41.3 _cell.length_c 72.06 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4MDM _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 92 A HIS 94 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? metalc ? metalc2 A NE2 HIS 94 A HIS 96 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc3 A ND1 HIS 117 A HIS 119 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc4 B ZN ZN . A ZN 301 1_555 C N2 26E . A 26E 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.864 ? # _chem_comp.formula 'C3 H5 B9 N2 O2 S' _chem_comp.formula_weight 230.448 _chem_comp.id 26E _chem_comp.mon_nstd_flag . _chem_comp.name 7-(sulfamoylamino)methyl-7,8-dicarba-nido-undecaborane _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 S1 26E doub 1 n n S1 O1 26E doub 2 n n S1 N2 26E sing 3 n n S1 N1 26E sing 4 n n N1 C3 26E sing 5 n n C3 C7 26E sing 6 n n C7 B11 26E sing 7 n n C7 B2 26E sing 8 n n C7 C8 26E sing 9 n n B11 B6 26E sing 10 n n B6 B2 26E sing 11 n n B6 B10 26E sing 12 n n B1 B2 26E sing 13 n n B1 B3 26E sing 14 n n B1 B4 26E sing 15 n n B2 B3 26E sing 16 n n B3 B4 26E sing 17 n n B3 C8 26E sing 18 n n B5 B4 26E sing 19 n n B9 C8 26E sing 20 n n B4 C8 26E sing 21 n n N2 H1 26E sing 22 n n N2 H2 26E sing 23 n n N1 H3 26E sing 24 n n C3 H4 26E sing 25 n n C3 H5 26E sing 26 n n B5 B1 26E sing 27 n n B5 B6 26E sing 28 n n B5 B9 26E sing 29 n n B5 B10 26E sing 30 n n B6 B1 26E sing 31 n n B10 B9 26E sing 32 n n B10 B11 26E sing 33 n n C7 B3 26E sing 34 n n B4 B9 26E sing 35 n n B2 B11 26E sing 36 n n # _atom_sites.entry_id 4MDM _atom_sites.fract_transf_matrix[1][1] 0.023804 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00601 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024213 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014313 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 262 ZN ZN . C 3 26E A 1 302 1 26E 26E . D 4 HOH A 1 401 1 HOH HOH . D 4 HOH A 2 402 2 HOH HOH . D 4 HOH A 3 403 3 HOH HOH . D 4 HOH A 4 404 4 HOH HOH . D 4 HOH A 5 405 5 HOH HOH . D 4 HOH A 6 406 6 HOH HOH . D 4 HOH A 7 407 7 HOH HOH . D 4 HOH A 8 408 8 HOH HOH . D 4 HOH A 9 409 9 HOH HOH . D 4 HOH A 10 410 10 HOH HOH . D 4 HOH A 11 411 11 HOH HOH . D 4 HOH A 12 412 12 HOH HOH . D 4 HOH A 13 413 13 HOH HOH . D 4 HOH A 14 414 14 HOH HOH . D 4 HOH A 15 415 15 HOH HOH . D 4 HOH A 16 416 17 HOH HOH . D 4 HOH A 17 417 18 HOH HOH . D 4 HOH A 18 418 19 HOH HOH . D 4 HOH A 19 419 20 HOH HOH . D 4 HOH A 20 420 21 HOH HOH . D 4 HOH A 21 421 22 HOH HOH . D 4 HOH A 22 422 23 HOH HOH . D 4 HOH A 23 423 24 HOH HOH . D 4 HOH A 24 424 25 HOH HOH . D 4 HOH A 25 425 26 HOH HOH . D 4 HOH A 26 426 27 HOH HOH . D 4 HOH A 27 427 28 HOH HOH . D 4 HOH A 28 428 29 HOH HOH . D 4 HOH A 29 429 30 HOH HOH . D 4 HOH A 30 430 31 HOH HOH . D 4 HOH A 31 431 32 HOH HOH . D 4 HOH A 32 432 33 HOH HOH . D 4 HOH A 33 433 34 HOH HOH . D 4 HOH A 34 434 35 HOH HOH . D 4 HOH A 35 435 36 HOH HOH . D 4 HOH A 36 436 37 HOH HOH . D 4 HOH A 37 437 38 HOH HOH . D 4 HOH A 38 438 39 HOH HOH . D 4 HOH A 39 439 40 HOH HOH . D 4 HOH A 40 440 41 HOH HOH . D 4 HOH A 41 441 42 HOH HOH . D 4 HOH A 42 442 43 HOH HOH . D 4 HOH A 43 443 44 HOH HOH . D 4 HOH A 44 444 45 HOH HOH . D 4 HOH A 45 445 46 HOH HOH . D 4 HOH A 46 446 47 HOH HOH . D 4 HOH A 47 447 48 HOH HOH . D 4 HOH A 48 448 49 HOH HOH . D 4 HOH A 49 449 50 HOH HOH . D 4 HOH A 50 450 51 HOH HOH . D 4 HOH A 51 451 52 HOH HOH . D 4 HOH A 52 452 53 HOH HOH . D 4 HOH A 53 453 54 HOH HOH . D 4 HOH A 54 454 55 HOH HOH . D 4 HOH A 55 455 56 HOH HOH . D 4 HOH A 56 456 57 HOH HOH . D 4 HOH A 57 457 58 HOH HOH . D 4 HOH A 58 458 59 HOH HOH . D 4 HOH A 59 459 60 HOH HOH . D 4 HOH A 60 460 61 HOH HOH . D 4 HOH A 61 461 62 HOH HOH . D 4 HOH A 62 462 63 HOH HOH . D 4 HOH A 63 463 64 HOH HOH . D 4 HOH A 64 464 65 HOH HOH . D 4 HOH A 65 465 66 HOH HOH . D 4 HOH A 66 466 67 HOH HOH . D 4 HOH A 67 467 68 HOH HOH . D 4 HOH A 68 468 69 HOH HOH . D 4 HOH A 69 469 70 HOH HOH . D 4 HOH A 70 470 71 HOH HOH . D 4 HOH A 71 471 72 HOH HOH . D 4 HOH A 72 472 73 HOH HOH . D 4 HOH A 73 473 74 HOH HOH . D 4 HOH A 74 474 75 HOH HOH . D 4 HOH A 75 475 76 HOH HOH . D 4 HOH A 76 476 77 HOH HOH . D 4 HOH A 77 477 78 HOH HOH . D 4 HOH A 78 478 79 HOH HOH . D 4 HOH A 79 479 80 HOH HOH . D 4 HOH A 80 480 81 HOH HOH . D 4 HOH A 81 481 82 HOH HOH . D 4 HOH A 82 482 83 HOH HOH . D 4 HOH A 83 483 84 HOH HOH . D 4 HOH A 84 484 85 HOH HOH . D 4 HOH A 85 485 86 HOH HOH . D 4 HOH A 86 486 87 HOH HOH . D 4 HOH A 87 487 88 HOH HOH . D 4 HOH A 88 488 89 HOH HOH . D 4 HOH A 89 489 90 HOH HOH . D 4 HOH A 90 490 91 HOH HOH . D 4 HOH A 91 491 93 HOH HOH . D 4 HOH A 92 492 94 HOH HOH . D 4 HOH A 93 493 95 HOH HOH . D 4 HOH A 94 494 96 HOH HOH . D 4 HOH A 95 495 97 HOH HOH . D 4 HOH A 96 496 98 HOH HOH . D 4 HOH A 97 497 99 HOH HOH . D 4 HOH A 98 498 100 HOH HOH . D 4 HOH A 99 499 101 HOH HOH . D 4 HOH A 100 500 102 HOH HOH . D 4 HOH A 101 501 103 HOH HOH . D 4 HOH A 102 502 104 HOH HOH . D 4 HOH A 103 503 105 HOH HOH . D 4 HOH A 104 504 106 HOH HOH . D 4 HOH A 105 505 107 HOH HOH . D 4 HOH A 106 506 108 HOH HOH . D 4 HOH A 107 507 110 HOH HOH . D 4 HOH A 108 508 111 HOH HOH . D 4 HOH A 109 509 112 HOH HOH . D 4 HOH A 110 510 113 HOH HOH . D 4 HOH A 111 511 114 HOH HOH . D 4 HOH A 112 512 115 HOH HOH . D 4 HOH A 113 513 116 HOH HOH . D 4 HOH A 114 514 117 HOH HOH . D 4 HOH A 115 515 118 HOH HOH . D 4 HOH A 116 516 119 HOH HOH . D 4 HOH A 117 517 120 HOH HOH . D 4 HOH A 118 518 121 HOH HOH . D 4 HOH A 119 519 122 HOH HOH . D 4 HOH A 120 520 123 HOH HOH . D 4 HOH A 121 521 124 HOH HOH . D 4 HOH A 122 522 125 HOH HOH . D 4 HOH A 123 523 126 HOH HOH . D 4 HOH A 124 524 127 HOH HOH . D 4 HOH A 125 525 128 HOH HOH . D 4 HOH A 126 526 129 HOH HOH . D 4 HOH A 127 527 130 HOH HOH . D 4 HOH A 128 528 131 HOH HOH . D 4 HOH A 129 529 132 HOH HOH . D 4 HOH A 130 530 133 HOH HOH . D 4 HOH A 131 531 134 HOH HOH . D 4 HOH A 132 532 135 HOH HOH . D 4 HOH A 133 533 136 HOH HOH . D 4 HOH A 134 534 137 HOH HOH . D 4 HOH A 135 535 138 HOH HOH . D 4 HOH A 136 536 139 HOH HOH . D 4 HOH A 137 537 140 HOH HOH . D 4 HOH A 138 538 141 HOH HOH . D 4 HOH A 139 539 142 HOH HOH . D 4 HOH A 140 540 143 HOH HOH . D 4 HOH A 141 541 145 HOH HOH . D 4 HOH A 142 542 146 HOH HOH . D 4 HOH A 143 543 147 HOH HOH . D 4 HOH A 144 544 148 HOH HOH . D 4 HOH A 145 545 149 HOH HOH . D 4 HOH A 146 546 150 HOH HOH . D 4 HOH A 147 547 151 HOH HOH . D 4 HOH A 148 548 152 HOH HOH . D 4 HOH A 149 549 153 HOH HOH . D 4 HOH A 150 550 154 HOH HOH . D 4 HOH A 151 551 155 HOH HOH . D 4 HOH A 152 552 156 HOH HOH . D 4 HOH A 153 553 157 HOH HOH . D 4 HOH A 154 554 158 HOH HOH . D 4 HOH A 155 555 159 HOH HOH . D 4 HOH A 156 556 160 HOH HOH . D 4 HOH A 157 557 161 HOH HOH . D 4 HOH A 158 558 162 HOH HOH . D 4 HOH A 159 559 163 HOH HOH . D 4 HOH A 160 560 164 HOH HOH . D 4 HOH A 161 561 165 HOH HOH . D 4 HOH A 162 562 166 HOH HOH . D 4 HOH A 163 563 167 HOH HOH . D 4 HOH A 164 564 168 HOH HOH . D 4 HOH A 165 565 169 HOH HOH . D 4 HOH A 166 566 170 HOH HOH . D 4 HOH A 167 567 171 HOH HOH . D 4 HOH A 168 568 173 HOH HOH . D 4 HOH A 169 569 174 HOH HOH . D 4 HOH A 170 570 175 HOH HOH . D 4 HOH A 171 571 176 HOH HOH . D 4 HOH A 172 572 177 HOH HOH . D 4 HOH A 173 573 178 HOH HOH . D 4 HOH A 174 574 179 HOH HOH . D 4 HOH A 175 575 180 HOH HOH . D 4 HOH A 176 576 181 HOH HOH . D 4 HOH A 177 577 182 HOH HOH . D 4 HOH A 178 578 183 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 26E . . . C 3 -6.721 1.236 16.364 1 16.2 ? O2 26E 302 A 1 HETATM 2 S S1 26E . . . C 3 -5.316 0.901 16.399 1 15.42 ? S1 26E 302 A 1 HETATM 3 O O1 26E . . . C 3 -4.667 1.273 17.711 1 15.4 ? O1 26E 302 A 1 HETATM 4 N N2 26E . . . C 3 -5.109 -0.707 16.027 1 11.53 ? N2 26E 302 A 1 HETATM 5 N N1 26E . . . C 3 -4.564 1.757 15.125 1 17.01 ? N1 26E 302 A 1 HETATM 6 C C3 26E . . . C 3 -4.695 3.233 15.077 1 20.55 ? C3 26E 302 A 1 HETATM 7 C C7 26E . . . C 3 -4.018 3.769 13.829 1 19.84 ? C7 26E 302 A 1 HETATM 8 B B11 26E . . . C 3 -4.526 3.32 12.352 1 20.63 ? B11 26E 302 A 1 HETATM 9 B B6 26E . . . C 3 -4.304 4.748 11.366 1 20.86 ? B6 26E 302 A 1 HETATM 10 B B1 26E . . . C 3 -3.77 6.134 12.385 1 21.94 ? B1 26E 302 A 1 HETATM 11 B B2 26E . . . C 3 -4.972 4.949 12.972 1 21.07 ? B2 26E 302 A 1 HETATM 12 B B3 26E . . . C 3 -3.685 5.51 14.043 1 21.56 ? B3 26E 302 A 1 HETATM 13 B B5 26E . . . C 3 -2.535 5.208 11.427 1 22.47 ? B5 26E 302 A 1 HETATM 14 B B10 26E . . . C 3 -3.041 3.483 11.292 1 22.39 ? B10 26E 302 A 1 HETATM 15 B B9 26E . . . C 3 -1.766 4.019 12.542 1 22.91 ? B9 26E 302 A 1 HETATM 16 B B4 26E . . . C 3 -2.224 5.707 13.112 1 21.87 ? B4 26E 302 A 1 HETATM 17 C C8 26E . . . C 3 -2.551 4.267 13.958 1 22.26 ? C8 26E 302 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 36 _model_server_stats.element_count 17 #