data_4MDN # _model_server_result.job_id j9JhIA6gd7njGUH83O5dNg _model_server_result.datetime_utc '2024-11-05 01:22:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4mdn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 4MDN # _exptl.entry_id 4MDN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 582.474 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-{(1S)-2-(tert-butylamino)-1-[{4-[(4-chlorobenzyl)oxy]benzyl}(formyl)amino]-2-oxoethyl}-6-chloro-1H-indole-2-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4MDN _cell.length_a 64.341 _cell.length_b 64.341 _cell.length_c 81.685 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4MDN _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C30 H29 Cl2 N3 O5' _chem_comp.formula_weight 582.474 _chem_comp.id Y30 _chem_comp.mon_nstd_flag . _chem_comp.name '3-{(1S)-2-(tert-butylamino)-1-[{4-[(4-chlorobenzyl)oxy]benzyl}(formyl)amino]-2-oxoethyl}-6-chloro-1H-indole-2-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CLH CBC Y30 sing 352 n n CBC CAL Y30 doub 353 n y CBC CAK Y30 sing 354 n y CAL CAN Y30 sing 355 n y CAK CAM Y30 doub 356 n y CAN CBE Y30 doub 357 n y CAM CBE Y30 sing 358 n y CBE CAV Y30 sing 359 n n CAV OAZ Y30 sing 360 n n OAZ CBG Y30 sing 361 n n CBG CAS Y30 doub 362 n y CBG CAR Y30 sing 363 n y CLI CBD Y30 sing 364 n n CAS CAP Y30 sing 365 n y CAR CAO Y30 doub 366 n y CAU CBD Y30 doub 367 n y CAU CBJ Y30 sing 368 n y CBD CAQ Y30 sing 369 n y NAY CBJ Y30 sing 370 n y NAY CBH Y30 sing 371 n y CBJ CBK Y30 doub 372 n y CAP CBF Y30 doub 373 n y CAO CBF Y30 sing 374 n y OAE CBA Y30 doub 375 n n CAQ CAT Y30 doub 376 n y CBF CAW Y30 sing 377 n n CBH CBA Y30 sing 378 n n CBH CBI Y30 doub 379 n y CBK CAT Y30 sing 380 n y CBK CBI Y30 sing 381 n y CBA OAG Y30 sing 382 n n CBI CA Y30 sing 383 n n CAW N Y30 sing 384 n n CA N Y30 sing 385 n n CA C Y30 sing 386 n n N CAJ Y30 sing 387 n n CAJ OAD Y30 doub 388 n n C NAX Y30 sing 389 n n C O Y30 doub 390 n n NAX CBN Y30 sing 391 n n CAA CBN Y30 sing 392 n n CBN CAC Y30 sing 393 n n CBN CAB Y30 sing 394 n n OAG H1 Y30 sing 395 n n NAY H2 Y30 sing 396 n n CAU H3 Y30 sing 397 n n CAQ H4 Y30 sing 398 n n CAT H5 Y30 sing 399 n n NAX H6 Y30 sing 400 n n CAA H7 Y30 sing 401 n n CAA H8 Y30 sing 402 n n CAA H9 Y30 sing 403 n n CAC H10 Y30 sing 404 n n CAC H11 Y30 sing 405 n n CAC H12 Y30 sing 406 n n CAB H13 Y30 sing 407 n n CAB H14 Y30 sing 408 n n CAB H15 Y30 sing 409 n n CAP H16 Y30 sing 410 n n CAS H17 Y30 sing 411 n n CAO H18 Y30 sing 412 n n CAR H19 Y30 sing 413 n n CAV H20 Y30 sing 414 n n CAV H21 Y30 sing 415 n n CAM H22 Y30 sing 416 n n CAN H23 Y30 sing 417 n n CAL H24 Y30 sing 418 n n CAK H25 Y30 sing 419 n n CA H26 Y30 sing 420 n n CAJ H27 Y30 sing 421 n n CAW H28 Y30 sing 422 n n CAW H29 Y30 sing 423 n n # _atom_sites.entry_id 4MDN _atom_sites.fract_transf_matrix[1][1] 0.015542 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015542 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012242 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 Y30 A 1 201 1 Y30 Y30 . C 3 SO4 A 1 202 1 SO4 SO4 . D 3 SO4 A 1 203 2 SO4 SO4 . E 4 HOH A 1 301 1 HOH HOH . E 4 HOH A 2 302 2 HOH HOH . E 4 HOH A 3 303 3 HOH HOH . E 4 HOH A 4 304 4 HOH HOH . E 4 HOH A 5 305 5 HOH HOH . E 4 HOH A 6 306 6 HOH HOH . E 4 HOH A 7 307 7 HOH HOH . E 4 HOH A 8 308 8 HOH HOH . E 4 HOH A 9 309 9 HOH HOH . E 4 HOH A 10 310 10 HOH HOH . E 4 HOH A 11 311 11 HOH HOH . E 4 HOH A 12 312 12 HOH HOH . E 4 HOH A 13 313 13 HOH HOH . E 4 HOH A 14 314 14 HOH HOH . E 4 HOH A 15 315 15 HOH HOH . E 4 HOH A 16 316 16 HOH HOH . E 4 HOH A 17 317 17 HOH HOH . E 4 HOH A 18 318 18 HOH HOH . E 4 HOH A 19 319 19 HOH HOH . E 4 HOH A 20 320 20 HOH HOH . E 4 HOH A 21 321 21 HOH HOH . E 4 HOH A 22 322 22 HOH HOH . E 4 HOH A 23 323 23 HOH HOH . E 4 HOH A 24 324 24 HOH HOH . E 4 HOH A 25 325 25 HOH HOH . E 4 HOH A 26 326 26 HOH HOH . E 4 HOH A 27 327 27 HOH HOH . E 4 HOH A 28 328 28 HOH HOH . E 4 HOH A 29 329 29 HOH HOH . E 4 HOH A 30 330 30 HOH HOH . E 4 HOH A 31 331 31 HOH HOH . E 4 HOH A 32 332 32 HOH HOH . E 4 HOH A 33 333 33 HOH HOH . E 4 HOH A 34 334 34 HOH HOH . E 4 HOH A 35 335 35 HOH HOH . E 4 HOH A 36 336 36 HOH HOH . E 4 HOH A 37 337 37 HOH HOH . E 4 HOH A 38 338 38 HOH HOH . E 4 HOH A 39 339 39 HOH HOH . E 4 HOH A 40 340 40 HOH HOH . E 4 HOH A 41 341 41 HOH HOH . E 4 HOH A 42 342 42 HOH HOH . E 4 HOH A 43 343 43 HOH HOH . E 4 HOH A 44 344 44 HOH HOH . E 4 HOH A 45 345 45 HOH HOH . E 4 HOH A 46 346 46 HOH HOH . E 4 HOH A 47 347 47 HOH HOH . E 4 HOH A 48 348 48 HOH HOH . E 4 HOH A 49 349 49 HOH HOH . E 4 HOH A 50 350 50 HOH HOH . E 4 HOH A 51 351 51 HOH HOH . E 4 HOH A 52 352 52 HOH HOH . E 4 HOH A 53 353 53 HOH HOH . E 4 HOH A 54 354 54 HOH HOH . E 4 HOH A 55 355 55 HOH HOH . E 4 HOH A 56 356 56 HOH HOH . E 4 HOH A 57 357 57 HOH HOH . E 4 HOH A 58 358 58 HOH HOH . E 4 HOH A 59 359 59 HOH HOH . E 4 HOH A 60 360 60 HOH HOH . E 4 HOH A 61 361 61 HOH HOH . E 4 HOH A 62 362 62 HOH HOH . E 4 HOH A 63 363 63 HOH HOH . E 4 HOH A 64 364 64 HOH HOH . E 4 HOH A 65 365 65 HOH HOH . E 4 HOH A 66 366 66 HOH HOH . E 4 HOH A 67 367 68 HOH HOH . E 4 HOH A 68 368 69 HOH HOH . E 4 HOH A 69 369 70 HOH HOH . E 4 HOH A 70 370 71 HOH HOH . E 4 HOH A 71 371 72 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAE Y30 . . . B 2 -13.188 -6.228 1.805 1 35.05 ? OAE Y30 201 A 1 HETATM 2 C CBA Y30 . . . B 2 -14.11 -6.09 2.645 1 36.97 ? CBA Y30 201 A 1 HETATM 3 O OAG Y30 . . . B 2 -14.22 -6.824 3.644 1 41.64 ? OAG Y30 201 A 1 HETATM 4 C CBH Y30 . . . B 2 -15.095 -5.013 2.369 1 33.65 ? CBH Y30 201 A 1 HETATM 5 N NAY Y30 . . . B 2 -14.996 -4.177 1.329 1 30.64 ? NAY Y30 201 A 1 HETATM 6 C CBJ Y30 . . . B 2 -16.033 -3.319 1.35 1 29.75 ? CBJ Y30 201 A 1 HETATM 7 C CAU Y30 . . . B 2 -16.362 -2.297 0.499 1 30.99 ? CAU Y30 201 A 1 HETATM 8 C CBD Y30 . . . B 2 -17.497 -1.564 0.74 1 33.82 ? CBD Y30 201 A 1 HETATM 9 CL CLI Y30 . . . B 2 -17.863 -0.283 -0.423 1 32.98 ? CLI Y30 201 A 1 HETATM 10 C CAQ Y30 . . . B 2 -18.313 -1.82 1.837 1 29.75 ? CAQ Y30 201 A 1 HETATM 11 C CAT Y30 . . . B 2 -17.977 -2.85 2.707 1 31.08 ? CAT Y30 201 A 1 HETATM 12 C CBK Y30 . . . B 2 -16.836 -3.594 2.447 1 33.49 ? CBK Y30 201 A 1 HETATM 13 C CBI Y30 . . . B 2 -16.225 -4.642 3.108 1 35.85 ? CBI Y30 201 A 1 HETATM 14 C CA Y30 . . . B 2 -16.983 -5.189 4.273 1 38.52 ? CA Y30 201 A 1 HETATM 15 C C Y30 . . . B 2 -17.288 -4.325 5.483 1 38.99 ? C Y30 201 A 1 HETATM 16 N NAX Y30 . . . B 2 -16.353 -3.471 5.93 1 34.71 ? NAX Y30 201 A 1 HETATM 17 C CBN Y30 . . . B 2 -16.534 -2.543 7.052 1 37.43 ? CBN Y30 201 A 1 HETATM 18 C CAA Y30 . . . B 2 -17.719 -1.616 6.813 1 36.67 ? CAA Y30 201 A 1 HETATM 19 C CAC Y30 . . . B 2 -15.326 -1.626 7.119 1 36.81 ? CAC Y30 201 A 1 HETATM 20 C CAB Y30 . . . B 2 -16.719 -3.236 8.399 1 39.25 ? CAB Y30 201 A 1 HETATM 21 O O Y30 . . . B 2 -18.397 -4.416 5.959 1 36.16 ? O Y30 201 A 1 HETATM 22 N N Y30 . . . B 2 -16.879 -6.663 4.283 1 44.93 ? N Y30 201 A 1 HETATM 23 C CAJ Y30 . . . B 2 -18.033 -7.427 4.364 1 38.49 ? CAJ Y30 201 A 1 HETATM 24 O OAD Y30 . . . B 2 -18.431 -8.557 4.422 1 44.02 ? OAD Y30 201 A 1 HETATM 25 C CAW Y30 . . . B 2 -18.214 -6.067 3.822 1 32.11 ? CAW Y30 201 A 1 HETATM 26 C CBF Y30 . . . B 2 -18.558 -6.219 2.309 1 43.99 ? CBF Y30 201 A 1 HETATM 27 C CAP Y30 . . . B 2 -17.66 -6.737 1.375 1 41.02 ? CAP Y30 201 A 1 HETATM 28 C CAS Y30 . . . B 2 -17.962 -6.875 0.011 1 39.33 ? CAS Y30 201 A 1 HETATM 29 C CAO Y30 . . . B 2 -19.816 -5.891 1.772 1 38.39 ? CAO Y30 201 A 1 HETATM 30 C CAR Y30 . . . B 2 -20.134 -6.02 0.395 1 40.64 ? CAR Y30 201 A 1 HETATM 31 C CBG Y30 . . . B 2 -19.195 -6.512 -0.525 1 42.59 ? CBG Y30 201 A 1 HETATM 32 O OAZ Y30 . . . B 2 -19.382 -6.724 -1.9 1 41.13 ? OAZ Y30 201 A 1 HETATM 33 C CAV Y30 . . . B 2 -20.5 -6.339 -2.744 1 42.11 ? CAV Y30 201 A 1 HETATM 34 C CBE Y30 . . . B 2 -20.078 -6.608 -4.18 1 36.13 ? CBE Y30 201 A 1 HETATM 35 C CAM Y30 . . . B 2 -19.918 -7.922 -4.625 1 36.9 ? CAM Y30 201 A 1 HETATM 36 C CAN Y30 . . . B 2 -19.831 -5.555 -5.053 1 37.62 ? CAN Y30 201 A 1 HETATM 37 C CAL Y30 . . . B 2 -19.417 -5.803 -6.357 1 31.57 ? CAL Y30 201 A 1 HETATM 38 C CBC Y30 . . . B 2 -19.25 -7.122 -6.78 1 34.77 ? CBC Y30 201 A 1 HETATM 39 CL CLH Y30 . . . B 2 -18.703 -7.432 -8.452 1 57.7 ? CLH Y30 201 A 1 HETATM 40 C CAK Y30 . . . B 2 -19.499 -8.191 -5.925 1 35.71 ? CAK Y30 201 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 40 #