data_4MDZ # _model_server_result.job_id r4v7SUgbXzdpuJkOlQ5UpA _model_server_result.datetime_utc '2024-11-05 02:26:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4mdz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":401}' # _entry.id 4MDZ # _exptl.entry_id 4MDZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 55.845 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE (III) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4MDZ _cell.length_a 70.19 _cell.length_b 183.01 _cell.length_c 233.46 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4MDZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 191 A GLU 185 1_555 E FE FE . A FE 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.704 ? metalc ? metalc2 A NE2 HIS 195 A HIS 189 1_555 E FE FE . A FE 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.702 ? metalc ? metalc3 A OD1 ASP 228 A ASP 222 1_555 C FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc4 A OD2 ASP 228 A ASP 222 1_555 D FE FE . A FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc5 A NE2 HIS 256 A HIS 250 1_555 C FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc6 A NE2 HIS 282 A HIS 276 1_555 C FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc7 A NE2 HIS 283 A HIS 277 1_555 C FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc8 A OD1 ASP 311 A ASP 305 1_555 E FE FE . A FE 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? metalc ? metalc9 C FE FE . A FE 401 1_555 F O4 SIN . A SIN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.891 ? metalc ? metalc10 C FE FE . A FE 401 1_555 M O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc11 D FE FE . A FE 402 1_555 F O3 SIN . A SIN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc12 D FE FE . A FE 402 1_555 M O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc13 E FE FE . A FE 403 1_555 M O HOH . A HOH 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.671 ? metalc ? metalc14 B OD2 ASP 228 B ASP 222 1_555 K FE FE . B FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc15 B NE2 HIS 256 B HIS 250 1_555 K FE FE . B FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc16 B NE2 HIS 282 B HIS 276 1_555 K FE FE . B FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc17 B NE2 HIS 283 B HIS 277 1_555 K FE FE . B FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc18 K FE FE . B FE 401 1_555 N O HOH . B HOH 546 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? # _chem_comp.formula 'Fe 3' _chem_comp.formula_weight 55.845 _chem_comp.id FE _chem_comp.mon_nstd_flag . _chem_comp.name 'FE (III) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4MDZ _atom_sites.fract_transf_matrix[1][1] 0.014247 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005464 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004283 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FE A 1 401 401 FE FE . D 2 FE A 1 402 402 FE FE . E 2 FE A 1 403 403 FE FE . F 3 SIN A 1 404 701 SIN SIN . G 3 SIN A 1 405 702 SIN SIN . H 3 SIN A 1 406 703 SIN SIN . I 3 SIN A 1 407 704 SIN SIN . J 3 SIN A 1 408 701 SIN SIN . K 2 FE B 1 401 404 FE FE . L 4 C2E B 1 402 501 C2E C2E . M 5 HOH A 1 501 1 HOH HOH . M 5 HOH A 2 502 3 HOH HOH . M 5 HOH A 3 503 7 HOH HOH . M 5 HOH A 4 504 8 HOH HOH . M 5 HOH A 5 505 9 HOH HOH . M 5 HOH A 6 506 15 HOH HOH . M 5 HOH A 7 507 16 HOH HOH . M 5 HOH A 8 508 17 HOH HOH . M 5 HOH A 9 509 19 HOH HOH . M 5 HOH A 10 510 20 HOH HOH . M 5 HOH A 11 511 21 HOH HOH . M 5 HOH A 12 512 22 HOH HOH . M 5 HOH A 13 513 23 HOH HOH . M 5 HOH A 14 514 24 HOH HOH . M 5 HOH A 15 515 33 HOH HOH . M 5 HOH A 16 516 34 HOH HOH . M 5 HOH A 17 517 36 HOH HOH . M 5 HOH A 18 518 40 HOH HOH . M 5 HOH A 19 519 41 HOH HOH . M 5 HOH A 20 520 45 HOH HOH . M 5 HOH A 21 521 47 HOH HOH . M 5 HOH A 22 522 49 HOH HOH . M 5 HOH A 23 523 51 HOH HOH . M 5 HOH A 24 524 52 HOH HOH . M 5 HOH A 25 525 53 HOH HOH . M 5 HOH A 26 526 56 HOH HOH . M 5 HOH A 27 527 58 HOH HOH . M 5 HOH A 28 528 59 HOH HOH . M 5 HOH A 29 529 60 HOH HOH . M 5 HOH A 30 530 61 HOH HOH . M 5 HOH A 31 531 67 HOH HOH . M 5 HOH A 32 532 72 HOH HOH . M 5 HOH A 33 533 76 HOH HOH . M 5 HOH A 34 534 77 HOH HOH . M 5 HOH A 35 535 79 HOH HOH . M 5 HOH A 36 536 82 HOH HOH . M 5 HOH A 37 537 84 HOH HOH . M 5 HOH A 38 538 88 HOH HOH . M 5 HOH A 39 539 89 HOH HOH . M 5 HOH A 40 540 91 HOH HOH . M 5 HOH A 41 541 92 HOH HOH . M 5 HOH A 42 542 95 HOH HOH . M 5 HOH A 43 543 97 HOH HOH . M 5 HOH A 44 544 98 HOH HOH . M 5 HOH A 45 545 99 HOH HOH . N 5 HOH B 1 501 2 HOH HOH . N 5 HOH B 2 502 4 HOH HOH . N 5 HOH B 3 503 5 HOH HOH . N 5 HOH B 4 504 6 HOH HOH . N 5 HOH B 5 505 10 HOH HOH . N 5 HOH B 6 506 11 HOH HOH . N 5 HOH B 7 507 12 HOH HOH . N 5 HOH B 8 508 13 HOH HOH . N 5 HOH B 9 509 14 HOH HOH . N 5 HOH B 10 510 18 HOH HOH . N 5 HOH B 11 511 25 HOH HOH . N 5 HOH B 12 512 26 HOH HOH . N 5 HOH B 13 513 27 HOH HOH . N 5 HOH B 14 514 28 HOH HOH . N 5 HOH B 15 515 29 HOH HOH . N 5 HOH B 16 516 30 HOH HOH . N 5 HOH B 17 517 31 HOH HOH . N 5 HOH B 18 518 35 HOH HOH . N 5 HOH B 19 519 37 HOH HOH . N 5 HOH B 20 520 38 HOH HOH . N 5 HOH B 21 521 39 HOH HOH . N 5 HOH B 22 522 42 HOH HOH . N 5 HOH B 23 523 43 HOH HOH . N 5 HOH B 24 524 44 HOH HOH . N 5 HOH B 25 525 46 HOH HOH . N 5 HOH B 26 526 48 HOH HOH . N 5 HOH B 27 527 50 HOH HOH . N 5 HOH B 28 528 54 HOH HOH . N 5 HOH B 29 529 55 HOH HOH . N 5 HOH B 30 530 57 HOH HOH . N 5 HOH B 31 531 62 HOH HOH . N 5 HOH B 32 532 63 HOH HOH . N 5 HOH B 33 533 64 HOH HOH . N 5 HOH B 34 534 65 HOH HOH . N 5 HOH B 35 535 66 HOH HOH . N 5 HOH B 36 536 68 HOH HOH . N 5 HOH B 37 537 70 HOH HOH . N 5 HOH B 38 538 71 HOH HOH . N 5 HOH B 39 539 73 HOH HOH . N 5 HOH B 40 540 74 HOH HOH . N 5 HOH B 41 541 75 HOH HOH . N 5 HOH B 42 542 78 HOH HOH . N 5 HOH B 43 543 81 HOH HOH . N 5 HOH B 44 544 83 HOH HOH . N 5 HOH B 45 545 85 HOH HOH . N 5 HOH B 46 546 86 HOH HOH . N 5 HOH B 47 547 87 HOH HOH . N 5 HOH B 48 548 90 HOH HOH . N 5 HOH B 49 549 93 HOH HOH . N 5 HOH B 50 550 94 HOH HOH . N 5 HOH B 51 551 96 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol FE _atom_site.label_atom_id FE _atom_site.label_comp_id FE _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id K _atom_site.label_entity_id 2 _atom_site.Cartn_x 27.102 _atom_site.Cartn_y 32.784 _atom_site.Cartn_z 18.034 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 55.41 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id FE _atom_site.auth_comp_id FE _atom_site.auth_seq_id 401 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #