data_4MDZ
#
_model_server_result.job_id            RbzaPpCjzY0i74eB_NyJUg 
_model_server_result.datetime_utc      '2024-11-05 02:21:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4mdz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":407}' 
#
_entry.id    4MDZ 
#
_exptl.entry_id    4MDZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.088 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SUCCINIC ACID' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4MDZ 
_cell.length_a            70.19 
_cell.length_b            183.01 
_cell.length_c            233.46 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4MDZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLU 191 A GLU 185 1_555 E FE FE . A FE 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.704 ? 
metalc ? metalc2 A NE2 HIS 195 A HIS 189 1_555 E FE FE . A FE 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.702 ? 
metalc ? metalc3 A OD1 ASP 228 A ASP 222 1_555 C FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? 
metalc ? metalc4 A OD2 ASP 228 A ASP 222 1_555 D FE FE . A FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
metalc ? metalc5 A NE2 HIS 256 A HIS 250 1_555 C FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? 
metalc ? metalc6 A NE2 HIS 282 A HIS 276 1_555 C FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? 
metalc ? metalc7 A NE2 HIS 283 A HIS 277 1_555 C FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? 
metalc ? metalc8 A OD1 ASP 311 A ASP 305 1_555 E FE FE . A FE 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? 
metalc ? metalc9 C FE FE . A FE 401 1_555 F O4 SIN . A SIN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.891 ? 
metalc ? metalc10 C FE FE . A FE 401 1_555 M O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
metalc ? metalc11 D FE FE . A FE 402 1_555 F O3 SIN . A SIN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? 
metalc ? metalc12 D FE FE . A FE 402 1_555 M O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? 
metalc ? metalc13 E FE FE . A FE 403 1_555 M O HOH . A HOH 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.671 ? 
metalc ? metalc14 B OD2 ASP 228 B ASP 222 1_555 K FE FE . B FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? 
metalc ? metalc15 B NE2 HIS 256 B HIS 250 1_555 K FE FE . B FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? 
metalc ? metalc16 B NE2 HIS 282 B HIS 276 1_555 K FE FE . B FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? 
metalc ? metalc17 B NE2 HIS 283 B HIS 277 1_555 K FE FE . B FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? 
metalc ? metalc18 K FE FE . B FE 401 1_555 N O HOH . B HOH 546 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? 
#
_chem_comp.formula           'C4 H6 O4' 
_chem_comp.formula_weight    118.088 
_chem_comp.id                SIN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SUCCINIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 SIN doub 366 n n 
C1 O2 SIN sing 367 n n 
C1 C2 SIN sing 368 n n 
O2 HO2 SIN sing 369 n n 
C2 C3 SIN sing 370 n n 
C2 H21 SIN sing 371 n n 
C2 H22 SIN sing 372 n n 
C3 C4 SIN sing 373 n n 
C3 H31 SIN sing 374 n n 
C3 H32 SIN sing 375 n n 
C4 O3 SIN doub 376 n n 
C4 O4 SIN sing 377 n n 
O4 HO4 SIN sing 378 n n 
#
_atom_sites.entry_id                     4MDZ 
_atom_sites.fract_transf_matrix[1][1]    0.014247 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005464 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004283 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FE A 1 401 401 FE FE . 
D 2 FE A 1 402 402 FE FE . 
E 2 FE A 1 403 403 FE FE . 
F 3 SIN A 1 404 701 SIN SIN . 
G 3 SIN A 1 405 702 SIN SIN . 
H 3 SIN A 1 406 703 SIN SIN . 
I 3 SIN A 1 407 704 SIN SIN . 
J 3 SIN A 1 408 701 SIN SIN . 
K 2 FE B 1 401 404 FE FE . 
L 4 C2E B 1 402 501 C2E C2E . 
M 5 HOH A 1 501 1 HOH HOH . 
M 5 HOH A 2 502 3 HOH HOH . 
M 5 HOH A 3 503 7 HOH HOH . 
M 5 HOH A 4 504 8 HOH HOH . 
M 5 HOH A 5 505 9 HOH HOH . 
M 5 HOH A 6 506 15 HOH HOH . 
M 5 HOH A 7 507 16 HOH HOH . 
M 5 HOH A 8 508 17 HOH HOH . 
M 5 HOH A 9 509 19 HOH HOH . 
M 5 HOH A 10 510 20 HOH HOH . 
M 5 HOH A 11 511 21 HOH HOH . 
M 5 HOH A 12 512 22 HOH HOH . 
M 5 HOH A 13 513 23 HOH HOH . 
M 5 HOH A 14 514 24 HOH HOH . 
M 5 HOH A 15 515 33 HOH HOH . 
M 5 HOH A 16 516 34 HOH HOH . 
M 5 HOH A 17 517 36 HOH HOH . 
M 5 HOH A 18 518 40 HOH HOH . 
M 5 HOH A 19 519 41 HOH HOH . 
M 5 HOH A 20 520 45 HOH HOH . 
M 5 HOH A 21 521 47 HOH HOH . 
M 5 HOH A 22 522 49 HOH HOH . 
M 5 HOH A 23 523 51 HOH HOH . 
M 5 HOH A 24 524 52 HOH HOH . 
M 5 HOH A 25 525 53 HOH HOH . 
M 5 HOH A 26 526 56 HOH HOH . 
M 5 HOH A 27 527 58 HOH HOH . 
M 5 HOH A 28 528 59 HOH HOH . 
M 5 HOH A 29 529 60 HOH HOH . 
M 5 HOH A 30 530 61 HOH HOH . 
M 5 HOH A 31 531 67 HOH HOH . 
M 5 HOH A 32 532 72 HOH HOH . 
M 5 HOH A 33 533 76 HOH HOH . 
M 5 HOH A 34 534 77 HOH HOH . 
M 5 HOH A 35 535 79 HOH HOH . 
M 5 HOH A 36 536 82 HOH HOH . 
M 5 HOH A 37 537 84 HOH HOH . 
M 5 HOH A 38 538 88 HOH HOH . 
M 5 HOH A 39 539 89 HOH HOH . 
M 5 HOH A 40 540 91 HOH HOH . 
M 5 HOH A 41 541 92 HOH HOH . 
M 5 HOH A 42 542 95 HOH HOH . 
M 5 HOH A 43 543 97 HOH HOH . 
M 5 HOH A 44 544 98 HOH HOH . 
M 5 HOH A 45 545 99 HOH HOH . 
N 5 HOH B 1 501 2 HOH HOH . 
N 5 HOH B 2 502 4 HOH HOH . 
N 5 HOH B 3 503 5 HOH HOH . 
N 5 HOH B 4 504 6 HOH HOH . 
N 5 HOH B 5 505 10 HOH HOH . 
N 5 HOH B 6 506 11 HOH HOH . 
N 5 HOH B 7 507 12 HOH HOH . 
N 5 HOH B 8 508 13 HOH HOH . 
N 5 HOH B 9 509 14 HOH HOH . 
N 5 HOH B 10 510 18 HOH HOH . 
N 5 HOH B 11 511 25 HOH HOH . 
N 5 HOH B 12 512 26 HOH HOH . 
N 5 HOH B 13 513 27 HOH HOH . 
N 5 HOH B 14 514 28 HOH HOH . 
N 5 HOH B 15 515 29 HOH HOH . 
N 5 HOH B 16 516 30 HOH HOH . 
N 5 HOH B 17 517 31 HOH HOH . 
N 5 HOH B 18 518 35 HOH HOH . 
N 5 HOH B 19 519 37 HOH HOH . 
N 5 HOH B 20 520 38 HOH HOH . 
N 5 HOH B 21 521 39 HOH HOH . 
N 5 HOH B 22 522 42 HOH HOH . 
N 5 HOH B 23 523 43 HOH HOH . 
N 5 HOH B 24 524 44 HOH HOH . 
N 5 HOH B 25 525 46 HOH HOH . 
N 5 HOH B 26 526 48 HOH HOH . 
N 5 HOH B 27 527 50 HOH HOH . 
N 5 HOH B 28 528 54 HOH HOH . 
N 5 HOH B 29 529 55 HOH HOH . 
N 5 HOH B 30 530 57 HOH HOH . 
N 5 HOH B 31 531 62 HOH HOH . 
N 5 HOH B 32 532 63 HOH HOH . 
N 5 HOH B 33 533 64 HOH HOH . 
N 5 HOH B 34 534 65 HOH HOH . 
N 5 HOH B 35 535 66 HOH HOH . 
N 5 HOH B 36 536 68 HOH HOH . 
N 5 HOH B 37 537 70 HOH HOH . 
N 5 HOH B 38 538 71 HOH HOH . 
N 5 HOH B 39 539 73 HOH HOH . 
N 5 HOH B 40 540 74 HOH HOH . 
N 5 HOH B 41 541 75 HOH HOH . 
N 5 HOH B 42 542 78 HOH HOH . 
N 5 HOH B 43 543 81 HOH HOH . 
N 5 HOH B 44 544 83 HOH HOH . 
N 5 HOH B 45 545 85 HOH HOH . 
N 5 HOH B 46 546 86 HOH HOH . 
N 5 HOH B 47 547 87 HOH HOH . 
N 5 HOH B 48 548 90 HOH HOH . 
N 5 HOH B 49 549 93 HOH HOH . 
N 5 HOH B 50 550 94 HOH HOH . 
N 5 HOH B 51 551 96 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 SIN . . . I 3 -8.159 13.107 17.826 0.3 26.95 ? C1 SIN 407 A 1 
HETATM 2 O O1 SIN . . . I 3 -7.745 13.889 16.958 0.3 29.56 ? O1 SIN 407 A 1 
HETATM 3 O O2 SIN . . . I 3 -8.934 13.482 18.733 0.3 25.06 ? O2 SIN 407 A 1 
HETATM 4 C C2 SIN . . . I 3 -7.689 11.677 17.702 0.3 25.81 ? C2 SIN 407 A 1 
HETATM 5 C C3 SIN . . . I 3 -6.48 11.623 16.776 0.3 26.66 ? C3 SIN 407 A 1 
HETATM 6 C C4 SIN . . . I 3 -5.3 12.459 17.242 0.3 26.46 ? C4 SIN 407 A 1 
HETATM 7 O O3 SIN . . . I 3 -5.502 13.386 18.028 0.3 27.58 ? O3 SIN 407 A 1 
HETATM 8 O O4 SIN . . . I 3 -4.146 12.234 16.835 0.3 24.96 ? O4 SIN 407 A 1 
#
_model_server_stats.io_time_ms              76 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    32 
_model_server_stats.query_time_ms           283 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           8 
#