data_4ME4 # _model_server_result.job_id 123awpOZB_keiAgchgdWVQ _model_server_result.datetime_utc '2024-11-05 01:13:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4me4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":406}' # _entry.id 4ME4 # _exptl.entry_id 4ME4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.088 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SUCCINIC ACID' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4ME4 _cell.length_a 70.09 _cell.length_b 181.12 _cell.length_c 231.51 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ME4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N ? 3 H N N ? 3 N N N ? 3 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 191 A GLU 185 1_555 D FE FE . A FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc2 A OE2 GLU 191 A GLU 185 1_555 E FE FE . A FE 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc3 A NE2 HIS 195 A HIS 189 1_555 E FE FE . A FE 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? metalc ? metalc4 A OD1 ASP 228 A ASP 222 1_555 C FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc5 A OD2 ASP 228 A ASP 222 1_555 D FE FE . A FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc6 A NE2 HIS 256 A HIS 250 1_555 C FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc7 A NE2 HIS 282 A HIS 276 1_555 C FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc8 A NE2 HIS 283 A HIS 277 1_555 C FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc9 A OD1 ASP 311 A ASP 305 1_555 E FE FE . A FE 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc10 C FE FE . A FE 401 1_555 F O4 SIN . A SIN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc11 C FE FE . A FE 401 1_555 Q O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.896 ? metalc ? metalc12 D FE FE . A FE 402 1_555 F O3 SIN . A SIN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? metalc ? metalc13 D FE FE . A FE 402 1_555 F O4 SIN . A SIN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.712 ? metalc ? metalc14 D FE FE . A FE 402 1_555 G O1 SIN . A SIN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc15 D FE FE . A FE 402 1_555 Q O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc16 D FE FE . A FE 402 1_555 Q O HOH . A HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc17 E FE FE . A FE 403 1_555 G O2 SIN . A SIN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc18 E FE FE . A FE 403 1_555 I N3 IMD . A IMD 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.768 ? metalc ? metalc19 E FE FE . A FE 403 1_555 Q O HOH . A HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.727 ? metalc ? metalc20 B OE2 GLU 191 B GLU 185 1_555 L FE FE . B FE 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.788 ? metalc ? metalc21 B NE2 HIS 195 B HIS 189 1_555 L FE FE . B FE 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc22 B OD1 ASP 228 B ASP 222 1_555 J FE FE . B FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc23 B OD2 ASP 228 B ASP 222 1_555 K FE FE . B FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc24 B NE2 HIS 256 B HIS 250 1_555 J FE FE . B FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc25 B NE2 HIS 282 B HIS 276 1_555 J FE FE . B FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc26 B NE2 HIS 283 B HIS 277 1_555 J FE FE . B FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc27 B OD1 ASP 311 B ASP 305 1_555 L FE FE . B FE 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc28 J FE FE . B FE 401 1_555 N O4 SIN . B SIN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc29 J FE FE . B FE 401 1_555 R O HOH . B HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.857 ? metalc ? metalc30 K FE FE . B FE 402 1_555 M O3P 5GP . B 5GP 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc31 K FE FE . B FE 402 1_555 N O4 SIN . B SIN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? metalc ? metalc32 K FE FE . B FE 402 1_555 R O HOH . B HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc33 K FE FE . B FE 402 1_555 R O HOH . B HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? metalc ? metalc34 L FE FE . B FE 403 1_555 M O1P 5GP . B 5GP 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc35 L FE FE . B FE 403 1_555 R O HOH . B HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.898 ? # _chem_comp.formula 'C4 H6 O4' _chem_comp.formula_weight 118.088 _chem_comp.id SIN _chem_comp.mon_nstd_flag . _chem_comp.name 'SUCCINIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 SIN doub 340 n n C1 O2 SIN sing 341 n n C1 C2 SIN sing 342 n n O2 HO2 SIN sing 343 n n C2 C3 SIN sing 344 n n C2 H21 SIN sing 345 n n C2 H22 SIN sing 346 n n C3 C4 SIN sing 347 n n C3 H31 SIN sing 348 n n C3 H32 SIN sing 349 n n C4 O3 SIN doub 350 n n C4 O4 SIN sing 351 n n O4 HO4 SIN sing 352 n n # _atom_sites.entry_id 4ME4 _atom_sites.fract_transf_matrix[1][1] 0.014267 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005521 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004319 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FE A 1 401 401 FE FE . D 2 FE A 1 402 402 FE FE . E 2 FE A 1 403 403 FE FE . F 3 SIN A 1 404 701 SIN SIN . G 3 SIN A 1 405 702 SIN SIN . H 3 SIN A 1 406 703 SIN SIN . I 4 IMD A 1 407 801 IMD IMD . J 2 FE B 1 401 404 FE FE . K 2 FE B 1 402 405 FE FE . L 2 FE B 1 403 406 FE FE . M 5 5GP B 1 404 601 5GP 5GP . N 3 SIN B 1 405 701 SIN SIN . O 3 SIN B 1 406 703 SIN SIN . P 4 IMD B 1 407 801 IMD IMD . Q 6 HOH A 1 501 1 HOH HOH . Q 6 HOH A 2 502 2 HOH HOH . Q 6 HOH A 3 503 12 HOH HOH . Q 6 HOH A 4 504 13 HOH HOH . Q 6 HOH A 5 505 17 HOH HOH . Q 6 HOH A 6 506 18 HOH HOH . Q 6 HOH A 7 507 19 HOH HOH . Q 6 HOH A 8 508 20 HOH HOH . Q 6 HOH A 9 509 21 HOH HOH . Q 6 HOH A 10 510 23 HOH HOH . Q 6 HOH A 11 511 24 HOH HOH . Q 6 HOH A 12 512 25 HOH HOH . Q 6 HOH A 13 513 26 HOH HOH . Q 6 HOH A 14 514 28 HOH HOH . Q 6 HOH A 15 515 30 HOH HOH . Q 6 HOH A 16 516 32 HOH HOH . Q 6 HOH A 17 517 34 HOH HOH . Q 6 HOH A 18 518 35 HOH HOH . Q 6 HOH A 19 519 37 HOH HOH . Q 6 HOH A 20 520 38 HOH HOH . Q 6 HOH A 21 521 39 HOH HOH . Q 6 HOH A 22 522 40 HOH HOH . Q 6 HOH A 23 523 42 HOH HOH . Q 6 HOH A 24 524 45 HOH HOH . Q 6 HOH A 25 525 46 HOH HOH . Q 6 HOH A 26 526 53 HOH HOH . Q 6 HOH A 27 527 55 HOH HOH . Q 6 HOH A 28 528 56 HOH HOH . Q 6 HOH A 29 529 61 HOH HOH . Q 6 HOH A 30 530 63 HOH HOH . Q 6 HOH A 31 531 64 HOH HOH . Q 6 HOH A 32 532 65 HOH HOH . Q 6 HOH A 33 533 68 HOH HOH . Q 6 HOH A 34 534 69 HOH HOH . Q 6 HOH A 35 535 70 HOH HOH . Q 6 HOH A 36 536 72 HOH HOH . Q 6 HOH A 37 537 74 HOH HOH . Q 6 HOH A 38 538 79 HOH HOH . Q 6 HOH A 39 539 81 HOH HOH . Q 6 HOH A 40 540 83 HOH HOH . Q 6 HOH A 41 541 84 HOH HOH . Q 6 HOH A 42 542 86 HOH HOH . Q 6 HOH A 43 543 88 HOH HOH . Q 6 HOH A 44 544 89 HOH HOH . Q 6 HOH A 45 545 91 HOH HOH . Q 6 HOH A 46 546 93 HOH HOH . Q 6 HOH A 47 547 94 HOH HOH . Q 6 HOH A 48 548 99 HOH HOH . Q 6 HOH A 49 549 101 HOH HOH . Q 6 HOH A 50 550 102 HOH HOH . Q 6 HOH A 51 551 109 HOH HOH . Q 6 HOH A 52 552 110 HOH HOH . Q 6 HOH A 53 553 111 HOH HOH . Q 6 HOH A 54 554 114 HOH HOH . Q 6 HOH A 55 555 115 HOH HOH . Q 6 HOH A 56 556 116 HOH HOH . Q 6 HOH A 57 557 118 HOH HOH . Q 6 HOH A 58 558 120 HOH HOH . Q 6 HOH A 59 559 121 HOH HOH . Q 6 HOH A 60 560 122 HOH HOH . Q 6 HOH A 61 561 124 HOH HOH . Q 6 HOH A 62 562 125 HOH HOH . Q 6 HOH A 63 563 128 HOH HOH . Q 6 HOH A 64 564 132 HOH HOH . Q 6 HOH A 65 565 133 HOH HOH . Q 6 HOH A 66 566 134 HOH HOH . Q 6 HOH A 67 567 136 HOH HOH . Q 6 HOH A 68 568 137 HOH HOH . Q 6 HOH A 69 569 138 HOH HOH . Q 6 HOH A 70 570 140 HOH HOH . Q 6 HOH A 71 571 142 HOH HOH . Q 6 HOH A 72 572 143 HOH HOH . R 6 HOH B 1 501 3 HOH HOH . R 6 HOH B 2 502 4 HOH HOH . R 6 HOH B 3 503 5 HOH HOH . R 6 HOH B 4 504 6 HOH HOH . R 6 HOH B 5 505 7 HOH HOH . R 6 HOH B 6 506 8 HOH HOH . R 6 HOH B 7 507 9 HOH HOH . R 6 HOH B 8 508 10 HOH HOH . R 6 HOH B 9 509 11 HOH HOH . R 6 HOH B 10 510 14 HOH HOH . R 6 HOH B 11 511 15 HOH HOH . R 6 HOH B 12 512 16 HOH HOH . R 6 HOH B 13 513 22 HOH HOH . R 6 HOH B 14 514 27 HOH HOH . R 6 HOH B 15 515 29 HOH HOH . R 6 HOH B 16 516 31 HOH HOH . R 6 HOH B 17 517 33 HOH HOH . R 6 HOH B 18 518 36 HOH HOH . R 6 HOH B 19 519 41 HOH HOH . R 6 HOH B 20 520 43 HOH HOH . R 6 HOH B 21 521 44 HOH HOH . R 6 HOH B 22 522 47 HOH HOH . R 6 HOH B 23 523 48 HOH HOH . R 6 HOH B 24 524 49 HOH HOH . R 6 HOH B 25 525 50 HOH HOH . R 6 HOH B 26 526 51 HOH HOH . R 6 HOH B 27 527 52 HOH HOH . R 6 HOH B 28 528 58 HOH HOH . R 6 HOH B 29 529 59 HOH HOH . R 6 HOH B 30 530 60 HOH HOH . R 6 HOH B 31 531 62 HOH HOH . R 6 HOH B 32 532 66 HOH HOH . R 6 HOH B 33 533 67 HOH HOH . R 6 HOH B 34 534 71 HOH HOH . R 6 HOH B 35 535 73 HOH HOH . R 6 HOH B 36 536 75 HOH HOH . R 6 HOH B 37 537 76 HOH HOH . R 6 HOH B 38 538 77 HOH HOH . R 6 HOH B 39 539 78 HOH HOH . R 6 HOH B 40 540 80 HOH HOH . R 6 HOH B 41 541 82 HOH HOH . R 6 HOH B 42 542 87 HOH HOH . R 6 HOH B 43 543 90 HOH HOH . R 6 HOH B 44 544 92 HOH HOH . R 6 HOH B 45 545 95 HOH HOH . R 6 HOH B 46 546 96 HOH HOH . R 6 HOH B 47 547 97 HOH HOH . R 6 HOH B 48 548 98 HOH HOH . R 6 HOH B 49 549 100 HOH HOH . R 6 HOH B 50 550 103 HOH HOH . R 6 HOH B 51 551 104 HOH HOH . R 6 HOH B 52 552 105 HOH HOH . R 6 HOH B 53 553 106 HOH HOH . R 6 HOH B 54 554 107 HOH HOH . R 6 HOH B 55 555 108 HOH HOH . R 6 HOH B 56 556 112 HOH HOH . R 6 HOH B 57 557 113 HOH HOH . R 6 HOH B 58 558 117 HOH HOH . R 6 HOH B 59 559 119 HOH HOH . R 6 HOH B 60 560 123 HOH HOH . R 6 HOH B 61 561 126 HOH HOH . R 6 HOH B 62 562 127 HOH HOH . R 6 HOH B 63 563 129 HOH HOH . R 6 HOH B 64 564 130 HOH HOH . R 6 HOH B 65 565 131 HOH HOH . R 6 HOH B 66 566 135 HOH HOH . R 6 HOH B 67 567 139 HOH HOH . R 6 HOH B 68 568 141 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 SIN . . . H 3 -7.694 11.541 17.77 0.3 19.65 ? C1 SIN 406 A 1 HETATM 2 O O1 SIN . . . H 3 -8.495 12.242 18.462 0.3 18.49 ? O1 SIN 406 A 1 HETATM 3 O O2 SIN . . . H 3 -7.615 10.296 17.717 0.3 19.33 ? O2 SIN 406 A 1 HETATM 4 C C2 SIN . . . H 3 -6.655 12.151 16.9 0.3 19.86 ? C2 SIN 406 A 1 HETATM 5 C C3 SIN . . . H 3 -5.666 11.008 16.827 0.3 20.06 ? C3 SIN 406 A 1 HETATM 6 C C4 SIN . . . H 3 -4.336 11.41 17.399 0.3 20.2 ? C4 SIN 406 A 1 HETATM 7 O O3 SIN . . . H 3 -4.232 12.418 18.095 0.3 21.3 ? O3 SIN 406 A 1 HETATM 8 O O4 SIN . . . H 3 -3.35 10.723 17.153 0.3 21.17 ? O4 SIN 406 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 35 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 8 #