data_4ME9 # _model_server_result.job_id uExFZd9-i4VZe2by44yRwQ _model_server_result.datetime_utc '2024-10-10 07:27:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4me9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":200}' # _entry.id 4ME9 # _exptl.entry_id 4ME9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4ME9 _cell.length_a 73.54 _cell.length_b 73.54 _cell.length_c 96.28 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ME9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 2 A MSE 1 1_555 A N ALA 3 A ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? covale ? covale2 A C ALA 14 A ALA 13 1_555 A N MSE 15 A MSE 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale3 A C MSE 15 A MSE 14 1_555 A N GLN 16 A GLN 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale4 A C PRO 29 A PRO 28 1_555 A N MSE 30 A MSE 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale5 A C MSE 30 A MSE 29 1_555 A N ILE 31 A ILE 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 ? covale ? covale6 A C SER 60 A SER 59 1_555 A N MSE 61 A MSE 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale7 A C MSE 61 A MSE 60 1_555 A N LEU 62 A LEU 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.354 ? covale ? covale8 A C GLU 66 A GLU 65 1_555 A N MSE 67 A MSE 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale9 A C MSE 67 A MSE 66 1_555 A N ILE 68 A ILE 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? covale ? covale10 A C PHE 127 A PHE 126 1_555 A N MSE 128 A MSE 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale11 A C MSE 128 A MSE 127 1_555 A N ASN 129 A ASN 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? covale ? covale12 B C ALA 14 B ALA 13 1_555 B N MSE 15 B MSE 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? covale ? covale13 B C MSE 15 B MSE 14 1_555 B N GLN 16 B GLN 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.354 ? covale ? covale14 B C PRO 29 B PRO 28 1_555 B N MSE 30 B MSE 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale15 B C MSE 30 B MSE 29 1_555 B N ILE 31 B ILE 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? covale ? covale16 B C SER 60 B SER 59 1_555 B N MSE 61 B MSE 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale17 B C MSE 61 B MSE 60 1_555 B N LEU 62 B LEU 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale18 B C GLU 66 B GLU 65 1_555 B N MSE 67 B MSE 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? covale ? covale19 B C MSE 67 B MSE 66 1_555 B N ILE 68 B ILE 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale20 B C PHE 127 B PHE 126 1_555 B N MSE 128 B MSE 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale21 B C MSE 128 B MSE 127 1_555 B N ASN 129 B ASN 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4ME9 _atom_sites.fract_transf_matrix[1][1] 0.013598 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013598 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010386 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CL A 1 201 201 CL CL . D 3 PO4 B 1 200 200 PO4 PO4 . E 4 HOH A 1 301 202 HOH HOH . E 4 HOH A 2 302 203 HOH HOH . E 4 HOH A 3 303 204 HOH HOH . E 4 HOH A 4 304 205 HOH HOH . E 4 HOH A 5 305 206 HOH HOH . E 4 HOH A 6 306 207 HOH HOH . E 4 HOH A 7 307 208 HOH HOH . E 4 HOH A 8 308 211 HOH HOH . E 4 HOH A 9 309 212 HOH HOH . E 4 HOH A 10 310 213 HOH HOH . E 4 HOH A 11 311 215 HOH HOH . E 4 HOH A 12 312 217 HOH HOH . E 4 HOH A 13 313 218 HOH HOH . E 4 HOH A 14 314 220 HOH HOH . E 4 HOH A 15 315 224 HOH HOH . E 4 HOH A 16 316 225 HOH HOH . E 4 HOH A 17 317 226 HOH HOH . E 4 HOH A 18 318 229 HOH HOH . E 4 HOH A 19 319 231 HOH HOH . E 4 HOH A 20 320 232 HOH HOH . E 4 HOH A 21 321 233 HOH HOH . E 4 HOH A 22 322 234 HOH HOH . E 4 HOH A 23 323 235 HOH HOH . E 4 HOH A 24 324 236 HOH HOH . E 4 HOH A 25 325 238 HOH HOH . E 4 HOH A 26 326 239 HOH HOH . E 4 HOH A 27 327 240 HOH HOH . E 4 HOH A 28 328 241 HOH HOH . E 4 HOH A 29 329 242 HOH HOH . E 4 HOH A 30 330 244 HOH HOH . E 4 HOH A 31 331 245 HOH HOH . E 4 HOH A 32 332 247 HOH HOH . E 4 HOH A 33 333 248 HOH HOH . E 4 HOH A 34 334 249 HOH HOH . E 4 HOH A 35 335 250 HOH HOH . E 4 HOH A 36 336 251 HOH HOH . E 4 HOH A 37 337 252 HOH HOH . E 4 HOH A 38 338 253 HOH HOH . E 4 HOH A 39 339 259 HOH HOH . E 4 HOH A 40 340 260 HOH HOH . E 4 HOH A 41 341 261 HOH HOH . E 4 HOH A 42 342 262 HOH HOH . E 4 HOH A 43 343 263 HOH HOH . E 4 HOH A 44 344 264 HOH HOH . E 4 HOH A 45 345 265 HOH HOH . E 4 HOH A 46 346 270 HOH HOH . E 4 HOH A 47 347 271 HOH HOH . E 4 HOH A 48 348 272 HOH HOH . E 4 HOH A 49 349 274 HOH HOH . E 4 HOH A 50 350 275 HOH HOH . E 4 HOH A 51 351 276 HOH HOH . E 4 HOH A 52 352 277 HOH HOH . E 4 HOH A 53 353 279 HOH HOH . E 4 HOH A 54 354 280 HOH HOH . E 4 HOH A 55 355 285 HOH HOH . E 4 HOH A 56 356 286 HOH HOH . E 4 HOH A 57 357 287 HOH HOH . E 4 HOH A 58 358 289 HOH HOH . F 4 HOH B 1 301 209 HOH HOH . F 4 HOH B 2 302 210 HOH HOH . F 4 HOH B 3 303 214 HOH HOH . F 4 HOH B 4 304 216 HOH HOH . F 4 HOH B 5 305 219 HOH HOH . F 4 HOH B 6 306 221 HOH HOH . F 4 HOH B 7 307 222 HOH HOH . F 4 HOH B 8 308 223 HOH HOH . F 4 HOH B 9 309 227 HOH HOH . F 4 HOH B 10 310 228 HOH HOH . F 4 HOH B 11 311 230 HOH HOH . F 4 HOH B 12 312 237 HOH HOH . F 4 HOH B 13 313 243 HOH HOH . F 4 HOH B 14 314 246 HOH HOH . F 4 HOH B 15 315 254 HOH HOH . F 4 HOH B 16 316 255 HOH HOH . F 4 HOH B 17 317 256 HOH HOH . F 4 HOH B 18 318 257 HOH HOH . F 4 HOH B 19 319 258 HOH HOH . F 4 HOH B 20 320 266 HOH HOH . F 4 HOH B 21 321 267 HOH HOH . F 4 HOH B 22 322 268 HOH HOH . F 4 HOH B 23 323 269 HOH HOH . F 4 HOH B 24 324 273 HOH HOH . F 4 HOH B 25 325 278 HOH HOH . F 4 HOH B 26 326 281 HOH HOH . F 4 HOH B 27 327 282 HOH HOH . F 4 HOH B 28 328 283 HOH HOH . F 4 HOH B 29 329 284 HOH HOH . F 4 HOH B 30 330 288 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . D 3 6.473 31.243 -3.418 1 105.94 ? P PO4 200 B 1 HETATM 2 O O1 PO4 . . . D 3 6.575 32.774 -3.691 1 106.08 ? O1 PO4 200 B 1 HETATM 3 O O2 PO4 . . . D 3 4.979 30.812 -3.231 1 104.34 ? O2 PO4 200 B 1 HETATM 4 O O3 PO4 . . . D 3 7.054 30.436 -4.628 1 106.96 ? O3 PO4 200 B 1 HETATM 5 O O4 PO4 . . . D 3 7.303 30.953 -2.133 1 106.45 ? O4 PO4 200 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 37 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 5 #