data_4MEC
#
_model_server_result.job_id            VDdPOW5XHsgJG-0yyusl3w 
_model_server_result.datetime_utc      '2024-10-14 08:26:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4mec 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":300}' 
#
_entry.id    4MEC 
#
_exptl.entry_id    4MEC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              626.051 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING ZN' 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         86.41 
_cell.angle_beta          87.62 
_cell.angle_gamma         86.25 
_cell.entry_id            4MEC 
_cell.length_a            40.059 
_cell.length_b            73.167 
_cell.length_c            148.757 
_cell.Z_PDB               7 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4MEC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
PISA monomeric 1 author_and_software_defined_assembly 5 
PISA monomeric 1 author_and_software_defined_assembly 6 
PISA monomeric 1 author_and_software_defined_assembly 7 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,H 1 1 
B,I 2 1 
C,J 3 1 
D,K 4 1 
E,L 5 1 
F,M 6 1 
G,N 7 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 25 A HIS 25 1_555 H ZN ZNH . A ZNH 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? 
metalc ? metalc2 B NE2 HIS 25 B HIS 25 1_555 I ZN ZNH . B ZNH 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? 
metalc ? metalc3 C NE2 HIS 25 C HIS 25 1_555 J ZN ZNH . C ZNH 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? 
metalc ? metalc4 D NE2 HIS 25 D HIS 25 1_555 K ZN ZNH . D ZNH 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.683 ? 
metalc ? metalc5 E NE2 HIS 25 E HIS 25 1_555 L ZN ZNH . E ZNH 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? 
metalc ? metalc6 F NE2 HIS 25 F HIS 25 1_555 M ZN ZNH . F ZNH 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? 
metalc ? metalc7 G NE2 HIS 25 G HIS 25 1_555 N ZN ZNH . G ZNH 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? 
#
_chem_comp.formula           'C34 H32 N4 O4 Zn' 
_chem_comp.formula_weight    626.051 
_chem_comp.id                ZNH 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING ZN' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
ZN NA ZNH sing 361 n n 
ZN NB ZNH sing 362 n n 
ZN NC ZNH sing 363 n n 
ZN ND ZNH sing 364 n n 
CHA C1A ZNH doub 365 n n 
CHA C4D ZNH sing 366 n n 
CHA HHA ZNH sing 367 n n 
CHB C4A ZNH doub 368 n n 
CHB C1B ZNH sing 369 n n 
CHB HHB ZNH sing 370 n n 
CHC C4B ZNH doub 371 n n 
CHC C1C ZNH sing 372 n n 
CHC HHC ZNH sing 373 n n 
CHD C4C ZNH sing 374 n n 
CHD C1D ZNH doub 375 n n 
CHD HHD ZNH sing 376 n n 
NA C1A ZNH sing 377 n n 
NA C4A ZNH sing 378 n n 
C1A C2A ZNH sing 379 n n 
C2A C3A ZNH doub 380 n n 
C2A CAA ZNH sing 381 n n 
C3A C4A ZNH sing 382 n n 
C3A CMA ZNH sing 383 n n 
CMA HMA1 ZNH sing 384 n n 
CMA HMA2 ZNH sing 385 n n 
CMA HMA3 ZNH sing 386 n n 
CAA CBA ZNH sing 387 n n 
CAA HAA1 ZNH sing 388 n n 
CAA HAA2 ZNH sing 389 n n 
CBA CGA ZNH sing 390 n n 
CBA HBA1 ZNH sing 391 n n 
CBA HBA2 ZNH sing 392 n n 
CGA O1A ZNH doub 393 n n 
CGA O2A ZNH sing 394 n n 
O2A H2A ZNH sing 395 n n 
NB C1B ZNH doub 396 n n 
NB C4B ZNH sing 397 n n 
C1B C2B ZNH sing 398 n n 
C2B C3B ZNH doub 399 n n 
C2B CMB ZNH sing 400 n n 
C3B C4B ZNH sing 401 n n 
C3B CAB ZNH sing 402 n n 
CMB HMB1 ZNH sing 403 n n 
CMB HMB2 ZNH sing 404 n n 
CMB HMB3 ZNH sing 405 n n 
CAB CBB ZNH doub 406 n n 
CAB HAB ZNH sing 407 n n 
CBB HBB1 ZNH sing 408 n n 
CBB HBB2 ZNH sing 409 n n 
NC C1C ZNH sing 410 n y 
NC C4C ZNH sing 411 n y 
C1C C2C ZNH doub 412 n y 
C2C C3C ZNH sing 413 n y 
C2C CMC ZNH sing 414 n n 
C3C C4C ZNH doub 415 n y 
C3C CAC ZNH sing 416 n n 
CMC HMC1 ZNH sing 417 n n 
CMC HMC2 ZNH sing 418 n n 
CMC HMC3 ZNH sing 419 n n 
CAC CBC ZNH doub 420 n n 
CAC HAC ZNH sing 421 n n 
CBC HBC1 ZNH sing 422 n n 
CBC HBC2 ZNH sing 423 n n 
ND C1D ZNH sing 424 n n 
ND C4D ZNH doub 425 n n 
C1D C2D ZNH sing 426 n n 
C2D C3D ZNH doub 427 n n 
C2D CMD ZNH sing 428 n n 
C3D C4D ZNH sing 429 n n 
C3D CAD ZNH sing 430 n n 
CMD HMD1 ZNH sing 431 n n 
CMD HMD2 ZNH sing 432 n n 
CMD HMD3 ZNH sing 433 n n 
CAD CBD ZNH sing 434 n n 
CAD HAD1 ZNH sing 435 n n 
CAD HAD2 ZNH sing 436 n n 
CBD CGD ZNH sing 437 n n 
CBD HBD1 ZNH sing 438 n n 
CBD HBD2 ZNH sing 439 n n 
CGD O1D ZNH doub 440 n n 
CGD O2D ZNH sing 441 n n 
O2D H2D ZNH sing 442 n n 
#
_atom_sites.entry_id                     4MEC 
_atom_sites.fract_transf_matrix[1][1]    0.024963 
_atom_sites.fract_transf_matrix[1][2]    -0.001637 
_atom_sites.fract_transf_matrix[1][3]    -0.000939 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013697 
_atom_sites.fract_transf_matrix[2][3]    -0.000826 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00674 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
H 2 ZNH A 1 300 300 ZNH ZNH . 
I 2 ZNH B 1 300 300 ZNH ZNH . 
J 2 ZNH C 1 300 300 ZNH ZNH . 
K 2 ZNH D 1 300 300 ZNH ZNH . 
L 2 ZNH E 1 300 300 ZNH ZNH . 
M 2 ZNH F 1 300 300 ZNH ZNH . 
N 2 ZNH G 1 300 300 ZNH ZNH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 ZN ZN ZNH . . . H 2 6.039 -8.165 2.15 1 82.19 ? ZN ZNH 300 A 1 
HETATM 2 C CHA ZNH . . . H 2 4.128 -10.934 1.481 1 80.09 ? CHA ZNH 300 A 1 
HETATM 3 C CHB ZNH . . . H 2 7.484 -9.866 4.836 1 82.88 ? CHB ZNH 300 A 1 
HETATM 4 C CHC ZNH . . . H 2 8.158 -5.543 2.725 1 79.88 ? CHC ZNH 300 A 1 
HETATM 5 C CHD ZNH . . . H 2 4.416 -6.358 -0.292 1 74.67 ? CHD ZNH 300 A 1 
HETATM 6 N NA ZNH . . . H 2 5.858 -10.068 2.999 1 81.53 ? NA ZNH 300 A 1 
HETATM 7 C C1A ZNH . . . H 2 4.98 -11.038 2.563 1 81.45 ? C1A ZNH 300 A 1 
HETATM 8 C C2A ZNH . . . H 2 5.106 -12.179 3.452 1 83.22 ? C2A ZNH 300 A 1 
HETATM 9 C C3A ZNH . . . H 2 6.027 -11.887 4.378 1 83.53 ? C3A ZNH 300 A 1 
HETATM 10 C C4A ZNH . . . H 2 6.521 -10.548 4.117 1 82.42 ? C4A ZNH 300 A 1 
HETATM 11 C CMA ZNH . . . H 2 6.481 -12.812 5.529 1 85.6 ? CMA ZNH 300 A 1 
HETATM 12 C CAA ZNH . . . H 2 4.302 -13.496 3.34 1 85.39 ? CAA ZNH 300 A 1 
HETATM 13 N NB ZNH . . . H 2 7.585 -7.792 3.518 1 81.69 ? NB ZNH 300 A 1 
HETATM 14 C C1B ZNH . . . H 2 7.962 -8.595 4.581 1 82.56 ? C1B ZNH 300 A 1 
HETATM 15 C C2B ZNH . . . H 2 8.939 -7.863 5.364 1 83.2 ? C2B ZNH 300 A 1 
HETATM 16 C C3B ZNH . . . H 2 9.124 -6.671 4.779 1 82.68 ? C3B ZNH 300 A 1 
HETATM 17 C C4B ZNH . . . H 2 8.275 -6.6 3.606 1 81.4 ? C4B ZNH 300 A 1 
HETATM 18 C CMB ZNH . . . H 2 9.631 -8.384 6.646 1 85.19 ? CMB ZNH 300 A 1 
HETATM 19 C CAB ZNH . . . H 2 10.07 -5.55 5.257 1 84.52 ? CAB ZNH 300 A 1 
HETATM 20 C CBB ZNH . . . H 2 9.96 -5.068 6.498 1 86.91 ? CBB ZNH 300 A 1 
HETATM 21 N NC ZNH . . . H 2 6.239 -6.292 1.355 1 77.24 ? NC ZNH 300 A 1 
HETATM 22 C C1C ZNH . . . H 2 7.182 -5.362 1.754 1 77.91 ? C1C ZNH 300 A 1 
HETATM 23 C C2C ZNH . . . H 2 6.959 -4.164 0.966 1 76.66 ? C2C ZNH 300 A 1 
HETATM 24 C C3C ZNH . . . H 2 5.937 -4.39 0.136 1 75.11 ? C3C ZNH 300 A 1 
HETATM 25 C C4C ZNH . . . H 2 5.459 -5.736 0.362 1 75.19 ? C4C ZNH 300 A 1 
HETATM 26 C CMC ZNH . . . H 2 7.767 -2.848 1.065 1 76.91 ? CMC ZNH 300 A 1 
HETATM 27 C CAC ZNH . . . H 2 5.361 -3.379 -0.881 1 74.26 ? CAC ZNH 300 A 1 
HETATM 28 C CBC ZNH . . . H 2 4.501 -2.451 -0.458 1 72.59 ? CBC ZNH 300 A 1 
HETATM 29 N ND ZNH . . . H 2 4.476 -8.573 0.807 1 77.91 ? ND ZNH 300 A 1 
HETATM 30 C C1D ZNH . . . H 2 4.011 -7.672 -0.15 1 75.9 ? C1D ZNH 300 A 1 
HETATM 31 C C2D ZNH . . . H 2 3.03 -8.351 -0.97 1 75.89 ? C2D ZNH 300 A 1 
HETATM 32 C C3D ZNH . . . H 2 2.94 -9.782 -0.421 1 77.51 ? C3D ZNH 300 A 1 
HETATM 33 C C4D ZNH . . . H 2 3.874 -9.828 0.689 1 78.39 ? C4D ZNH 300 A 1 
HETATM 34 C CMD ZNH . . . H 2 2.237 -7.774 -2.16 1 74.67 ? CMD ZNH 300 A 1 
HETATM 35 C CAD ZNH . . . H 2 2.023 -10.91 -0.951 1 78.75 ? CAD ZNH 300 A 1 
HETATM 36 C CBD ZNH . . . H 2 2.836 -12.054 -1.549 1 81.25 ? CBD ZNH 300 A 1 
HETATM 37 C CGD ZNH . . . H 2 1.973 -13.29 -1.636 1 83.7 ? CGD ZNH 300 A 1 
HETATM 38 O O1D ZNH . . . H 2 1.783 -13.974 -0.594 1 84.2 ? O1D ZNH 300 A 1 
HETATM 39 O O2D ZNH . . . H 2 1.476 -13.6 -2.753 1 84.92 ? O2D ZNH 300 A 1 
#
_model_server_stats.io_time_ms              26 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    30 
_model_server_stats.query_time_ms           257 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           39 
#