data_4MEC # _model_server_result.job_id nkS1u2u5m1AJ7bkk0soyFw _model_server_result.datetime_utc '2024-10-14 08:21:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4mec # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":300}' # _entry.id 4MEC # _exptl.entry_id 4MEC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 626.051 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING ZN' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 86.41 _cell.angle_beta 87.62 _cell.angle_gamma 86.25 _cell.entry_id 4MEC _cell.length_a 40.059 _cell.length_b 73.167 _cell.length_c 148.757 _cell.Z_PDB 7 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4MEC _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 PISA monomeric 1 author_and_software_defined_assembly 5 PISA monomeric 1 author_and_software_defined_assembly 6 PISA monomeric 1 author_and_software_defined_assembly 7 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,H 1 1 B,I 2 1 C,J 3 1 D,K 4 1 E,L 5 1 F,M 6 1 G,N 7 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 25 A HIS 25 1_555 H ZN ZNH . A ZNH 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc2 B NE2 HIS 25 B HIS 25 1_555 I ZN ZNH . B ZNH 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc3 C NE2 HIS 25 C HIS 25 1_555 J ZN ZNH . C ZNH 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc4 D NE2 HIS 25 D HIS 25 1_555 K ZN ZNH . D ZNH 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.683 ? metalc ? metalc5 E NE2 HIS 25 E HIS 25 1_555 L ZN ZNH . E ZNH 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? metalc ? metalc6 F NE2 HIS 25 F HIS 25 1_555 M ZN ZNH . F ZNH 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc7 G NE2 HIS 25 G HIS 25 1_555 N ZN ZNH . G ZNH 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? # _chem_comp.formula 'C34 H32 N4 O4 Zn' _chem_comp.formula_weight 626.051 _chem_comp.id ZNH _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING ZN' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag ZN NA ZNH sing 361 n n ZN NB ZNH sing 362 n n ZN NC ZNH sing 363 n n ZN ND ZNH sing 364 n n CHA C1A ZNH doub 365 n n CHA C4D ZNH sing 366 n n CHA HHA ZNH sing 367 n n CHB C4A ZNH doub 368 n n CHB C1B ZNH sing 369 n n CHB HHB ZNH sing 370 n n CHC C4B ZNH doub 371 n n CHC C1C ZNH sing 372 n n CHC HHC ZNH sing 373 n n CHD C4C ZNH sing 374 n n CHD C1D ZNH doub 375 n n CHD HHD ZNH sing 376 n n NA C1A ZNH sing 377 n n NA C4A ZNH sing 378 n n C1A C2A ZNH sing 379 n n C2A C3A ZNH doub 380 n n C2A CAA ZNH sing 381 n n C3A C4A ZNH sing 382 n n C3A CMA ZNH sing 383 n n CMA HMA1 ZNH sing 384 n n CMA HMA2 ZNH sing 385 n n CMA HMA3 ZNH sing 386 n n CAA CBA ZNH sing 387 n n CAA HAA1 ZNH sing 388 n n CAA HAA2 ZNH sing 389 n n CBA CGA ZNH sing 390 n n CBA HBA1 ZNH sing 391 n n CBA HBA2 ZNH sing 392 n n CGA O1A ZNH doub 393 n n CGA O2A ZNH sing 394 n n O2A H2A ZNH sing 395 n n NB C1B ZNH doub 396 n n NB C4B ZNH sing 397 n n C1B C2B ZNH sing 398 n n C2B C3B ZNH doub 399 n n C2B CMB ZNH sing 400 n n C3B C4B ZNH sing 401 n n C3B CAB ZNH sing 402 n n CMB HMB1 ZNH sing 403 n n CMB HMB2 ZNH sing 404 n n CMB HMB3 ZNH sing 405 n n CAB CBB ZNH doub 406 n n CAB HAB ZNH sing 407 n n CBB HBB1 ZNH sing 408 n n CBB HBB2 ZNH sing 409 n n NC C1C ZNH sing 410 n y NC C4C ZNH sing 411 n y C1C C2C ZNH doub 412 n y C2C C3C ZNH sing 413 n y C2C CMC ZNH sing 414 n n C3C C4C ZNH doub 415 n y C3C CAC ZNH sing 416 n n CMC HMC1 ZNH sing 417 n n CMC HMC2 ZNH sing 418 n n CMC HMC3 ZNH sing 419 n n CAC CBC ZNH doub 420 n n CAC HAC ZNH sing 421 n n CBC HBC1 ZNH sing 422 n n CBC HBC2 ZNH sing 423 n n ND C1D ZNH sing 424 n n ND C4D ZNH doub 425 n n C1D C2D ZNH sing 426 n n C2D C3D ZNH doub 427 n n C2D CMD ZNH sing 428 n n C3D C4D ZNH sing 429 n n C3D CAD ZNH sing 430 n n CMD HMD1 ZNH sing 431 n n CMD HMD2 ZNH sing 432 n n CMD HMD3 ZNH sing 433 n n CAD CBD ZNH sing 434 n n CAD HAD1 ZNH sing 435 n n CAD HAD2 ZNH sing 436 n n CBD CGD ZNH sing 437 n n CBD HBD1 ZNH sing 438 n n CBD HBD2 ZNH sing 439 n n CGD O1D ZNH doub 440 n n CGD O2D ZNH sing 441 n n O2D H2D ZNH sing 442 n n # _atom_sites.entry_id 4MEC _atom_sites.fract_transf_matrix[1][1] 0.024963 _atom_sites.fract_transf_matrix[1][2] -0.001637 _atom_sites.fract_transf_matrix[1][3] -0.000939 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013697 _atom_sites.fract_transf_matrix[2][3] -0.000826 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00674 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 2 ZNH A 1 300 300 ZNH ZNH . I 2 ZNH B 1 300 300 ZNH ZNH . J 2 ZNH C 1 300 300 ZNH ZNH . K 2 ZNH D 1 300 300 ZNH ZNH . L 2 ZNH E 1 300 300 ZNH ZNH . M 2 ZNH F 1 300 300 ZNH ZNH . N 2 ZNH G 1 300 300 ZNH ZNH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZNH _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id N _atom_site.label_entity_id 2 _atom_site.Cartn_x -20.766 _atom_site.Cartn_y -112.35 _atom_site.Cartn_z 120.619 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 190.8 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZNH _atom_site.auth_seq_id 300 _atom_site.auth_asym_id G _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #