data_4MEX # _model_server_result.job_id HYB7r-dpoQAc-oUW3MOyOw _model_server_result.datetime_utc '2024-12-22 01:04:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4mex # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":2001}' # _entry.id 4MEX # _exptl.entry_id 4MEX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4MEX _cell.length_a 185.8 _cell.length_b 208.188 _cell.length_c 308.179 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4MEX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? heptameric 7 author_defined_assembly 1 ? heptameric 7 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,M,O,P,Q 1 1 G,H,I,J,K,L,N,R,S,T 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 P N N ? 8 Q N N ? 8 S N N ? 8 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D OD1 ASP 460 D ASP 460 1_555 O MG MG . D MG 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc2 D SG CYS 88 D CYS 88 1_555 P ZN ZN . D ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc3 D SG CYS 814 D CYS 814 1_555 Q ZN ZN . D ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc4 J SG CYS 814 J CYS 814 1_555 T ZN ZN . J ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc5 D SG CYS 72 D CYS 72 1_555 P ZN ZN . D ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc6 J SG CYS 898 J CYS 898 1_555 T ZN ZN . J ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc7 J SG CYS 72 J CYS 72 1_555 S ZN ZN . J ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc8 J SG CYS 88 J CYS 88 1_555 S ZN ZN . J ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc9 J SG CYS 70 J CYS 70 1_555 S ZN ZN . J ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc10 J OD1 ASP 460 J ASP 460 1_555 R MG MG . J MG 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc11 D SG CYS 70 D CYS 70 1_555 P ZN ZN . D ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc12 J SG CYS 895 J CYS 895 1_555 T ZN ZN . J ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc13 D SG CYS 898 D CYS 898 1_555 Q ZN ZN . D ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc14 D SG CYS 895 D CYS 895 1_555 Q ZN ZN . D ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc15 J SG CYS 888 J CYS 888 1_555 T ZN ZN . J ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc16 D SG CYS 888 D CYS 888 1_555 Q ZN ZN . D ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc17 D OD1 ASP 462 D ASP 462 1_555 O MG MG . D MG 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc18 J OD1 ASP 462 J ASP 462 1_555 R MG MG . J MG 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc19 D SG CYS 85 D CYS 85 1_555 P ZN ZN . D ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? metalc ? metalc20 D OD1 ASP 464 D ASP 464 1_555 O MG MG . D MG 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? metalc ? metalc21 J OD1 ASP 464 J ASP 464 1_555 R MG MG . J MG 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.648 ? metalc ? metalc22 J SG CYS 85 J CYS 85 1_555 S ZN ZN . J ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.684 ? metalc ? metalc23 J OD2 ASP 462 J ASP 462 1_555 R MG MG . J MG 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.894 ? metalc ? metalc24 D OD2 ASP 462 D ASP 462 1_555 O MG MG . D MG 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.981 ? covale ? covale1 N CBX 28H 1 N 28H 1 1_555 N N THR 2 N THR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale2 N C THR 2 N THR 2 1_555 N N 28J 3 N 28J 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.4 ? covale ? covale3 N C 28J 3 N 28J 3 1_555 N N D4P 4 N D4P 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.399 ? covale ? covale4 N C D4P 4 N D4P 4 1_555 N N MEA 5 N MEA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale5 N C MEA 5 N MEA 5 1_555 N N 2TL 6 N 2TL 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.4 ? covale ? covale6 N C 2TL 6 N 2TL 6 1_555 N N SER 7 N SER 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.401 ? covale ? covale7 N N GLY 8 N GLY 8 1_555 N CAD 28K 9 N 28K 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.399 ? covale ? covale8 M CBX 28H 1 M 28H 1 1_555 M N THR 2 M THR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale9 M C THR 2 M THR 2 1_555 M N 28J 3 M 28J 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.4 ? covale ? covale10 M C 28J 3 M 28J 3 1_555 M N D4P 4 M D4P 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.399 ? covale ? covale11 M C D4P 4 M D4P 4 1_555 M N MEA 5 M MEA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale12 M C MEA 5 M MEA 5 1_555 M N 2TL 6 M 2TL 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.4 ? covale ? covale13 M C 2TL 6 M 2TL 6 1_555 M N SER 7 M SER 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.4 ? covale ? covale14 M N GLY 8 M GLY 8 1_555 M CAD 28K 9 M 28K 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.4 ? covale ? covale15 M OG1 THR 2 M THR 2 1_555 M C SER 7 M SER 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.36 ? covale ? covale16 N OG1 THR 2 N THR 2 1_555 N C SER 7 N SER 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.36 ? covale ? covale17 N OG SER 7 N SER 7 1_555 N C GLY 8 N GLY 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.36 ? covale ? covale18 M OG SER 7 M SER 7 1_555 M C GLY 8 M GLY 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.36 ? covale ? covale19 N O4 D4P 4 N D4P 4 1_555 N CAH 28K 9 N 28K 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale20 M O4 D4P 4 M D4P 4 1_555 M CAH 28K 9 M 28K 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4MEX _atom_sites.fract_transf_matrix[1][1] 0.005382 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004803 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003245 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code O 7 MG D 1 2000 2000 MG MG . P 8 ZN D 1 2001 2001 ZN ZN . Q 8 ZN D 1 2002 2002 ZN ZN . R 7 MG J 1 2000 2000 MG MG . S 8 ZN J 1 2001 2001 ZN ZN . T 8 ZN J 1 2002 2002 ZN ZN . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id P _atom_site.label_entity_id 8 _atom_site.Cartn_x -19.685 _atom_site.Cartn_y 40.091 _atom_site.Cartn_z 27.767 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 87.61 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 2001 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 101 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #