data_4MG5 # _model_server_result.job_id j7YJ9TQRoszzmJCeoSuwUA _model_server_result.datetime_utc '2024-11-24 16:24:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4mg5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":601}' # _entry.id 4MG5 # _exptl.entry_id 4MG5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.28 _cell.angle_gamma 90 _cell.entry_id 4MG5 _cell.length_a 54.7 _cell.length_b 81.78 _cell.length_c 58.56 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4MG5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 83 A GLU 380 1_555 A N CSO 84 A CSO 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 A C CSO 84 A CSO 381 1_555 A N ALA 85 A ALA 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 A C LYS 232 A LYS 529 1_555 A N CSO 233 A CSO 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 A C CSO 233 A CSO 530 1_555 A N LYS 234 A LYS 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale5 B C GLU 83 B GLU 380 1_555 B N CSO 84 B CSO 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale6 B C CSO 84 B CSO 381 1_555 B N ALA 85 B ALA 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale7 B C LYS 232 B LYS 529 1_555 B N CSO 233 B CSO 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale8 B C CSO 233 B CSO 530 1_555 B N LYS 234 B LYS 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 171 n n C1 C2 GOL sing 172 n n C1 H11 GOL sing 173 n n C1 H12 GOL sing 174 n n O1 HO1 GOL sing 175 n n C2 O2 GOL sing 176 n n C2 C3 GOL sing 177 n n C2 H2 GOL sing 178 n n O2 HO2 GOL sing 179 n n C3 O3 GOL sing 180 n n C3 H31 GOL sing 181 n n C3 H32 GOL sing 182 n n O3 HO3 GOL sing 183 n n # _atom_sites.entry_id 4MG5 _atom_sites.fract_transf_matrix[1][1] 0.018282 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006755 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012228 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018205 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GOL A 1 601 2 GOL GOL . F 4 A1AQV A 1 602 1 A1AQV CDD . G 3 GOL B 1 601 1 GOL GOL . H 3 GOL B 1 602 1 GOL GOL . I 4 A1AQV B 1 603 2 A1AQV CDD . J 5 HOH A 1 701 204 HOH HOH . J 5 HOH A 2 702 55 HOH HOH . J 5 HOH A 3 703 210 HOH HOH . J 5 HOH A 4 704 140 HOH HOH . J 5 HOH A 5 705 45 HOH HOH . J 5 HOH A 6 706 53 HOH HOH . J 5 HOH A 7 707 14 HOH HOH . J 5 HOH A 8 708 60 HOH HOH . J 5 HOH A 9 709 65 HOH HOH . J 5 HOH A 10 710 15 HOH HOH . J 5 HOH A 11 711 166 HOH HOH . J 5 HOH A 12 712 12 HOH HOH . J 5 HOH A 13 713 97 HOH HOH . J 5 HOH A 14 714 17 HOH HOH . J 5 HOH A 15 715 164 HOH HOH . J 5 HOH A 16 716 132 HOH HOH . J 5 HOH A 17 717 59 HOH HOH . J 5 HOH A 18 718 29 HOH HOH . J 5 HOH A 19 719 1 HOH HOH . J 5 HOH A 20 720 27 HOH HOH . J 5 HOH A 21 721 226 HOH HOH . J 5 HOH A 22 722 26 HOH HOH . J 5 HOH A 23 723 91 HOH HOH . J 5 HOH A 24 724 82 HOH HOH . J 5 HOH A 25 725 3 HOH HOH . J 5 HOH A 26 726 136 HOH HOH . J 5 HOH A 27 727 67 HOH HOH . J 5 HOH A 28 728 214 HOH HOH . J 5 HOH A 29 729 86 HOH HOH . J 5 HOH A 30 730 139 HOH HOH . J 5 HOH A 31 731 7 HOH HOH . J 5 HOH A 32 732 31 HOH HOH . J 5 HOH A 33 733 4 HOH HOH . J 5 HOH A 34 734 87 HOH HOH . J 5 HOH A 35 735 115 HOH HOH . J 5 HOH A 36 736 51 HOH HOH . J 5 HOH A 37 737 121 HOH HOH . J 5 HOH A 38 738 35 HOH HOH . J 5 HOH A 39 739 217 HOH HOH . J 5 HOH A 40 740 20 HOH HOH . J 5 HOH A 41 741 34 HOH HOH . J 5 HOH A 42 742 89 HOH HOH . J 5 HOH A 43 743 135 HOH HOH . J 5 HOH A 44 744 69 HOH HOH . J 5 HOH A 45 745 145 HOH HOH . J 5 HOH A 46 746 71 HOH HOH . J 5 HOH A 47 747 133 HOH HOH . J 5 HOH A 48 748 134 HOH HOH . J 5 HOH A 49 749 141 HOH HOH . J 5 HOH A 50 750 46 HOH HOH . J 5 HOH A 51 751 72 HOH HOH . J 5 HOH A 52 752 120 HOH HOH . J 5 HOH A 53 753 165 HOH HOH . J 5 HOH A 54 754 215 HOH HOH . J 5 HOH A 55 755 212 HOH HOH . J 5 HOH A 56 756 137 HOH HOH . J 5 HOH A 57 757 85 HOH HOH . J 5 HOH A 58 758 224 HOH HOH . J 5 HOH A 59 759 47 HOH HOH . J 5 HOH A 60 760 62 HOH HOH . J 5 HOH A 61 761 114 HOH HOH . J 5 HOH A 62 762 118 HOH HOH . J 5 HOH A 63 763 122 HOH HOH . J 5 HOH A 64 764 223 HOH HOH . J 5 HOH A 65 765 222 HOH HOH . J 5 HOH A 66 766 144 HOH HOH . J 5 HOH A 67 767 103 HOH HOH . J 5 HOH A 68 768 138 HOH HOH . J 5 HOH A 69 769 104 HOH HOH . J 5 HOH A 70 770 123 HOH HOH . J 5 HOH A 71 771 143 HOH HOH . J 5 HOH A 72 772 213 HOH HOH . J 5 HOH A 73 773 216 HOH HOH . J 5 HOH A 74 774 227 HOH HOH . J 5 HOH A 75 775 131 HOH HOH . J 5 HOH A 76 776 40 HOH HOH . K 5 HOH B 1 701 228 HOH HOH . K 5 HOH B 2 702 151 HOH HOH . K 5 HOH B 3 703 56 HOH HOH . K 5 HOH B 4 704 205 HOH HOH . K 5 HOH B 5 705 39 HOH HOH . K 5 HOH B 6 706 66 HOH HOH . K 5 HOH B 7 707 11 HOH HOH . K 5 HOH B 8 708 41 HOH HOH . K 5 HOH B 9 709 33 HOH HOH . K 5 HOH B 10 710 74 HOH HOH . K 5 HOH B 11 711 18 HOH HOH . K 5 HOH B 12 712 75 HOH HOH . K 5 HOH B 13 713 23 HOH HOH . K 5 HOH B 14 714 37 HOH HOH . K 5 HOH B 15 715 16 HOH HOH . K 5 HOH B 16 716 163 HOH HOH . K 5 HOH B 17 717 111 HOH HOH . K 5 HOH B 18 718 9 HOH HOH . K 5 HOH B 19 719 19 HOH HOH . K 5 HOH B 20 720 10 HOH HOH . K 5 HOH B 21 721 42 HOH HOH . K 5 HOH B 22 722 30 HOH HOH . K 5 HOH B 23 723 155 HOH HOH . K 5 HOH B 24 724 22 HOH HOH . K 5 HOH B 25 725 126 HOH HOH . K 5 HOH B 26 726 102 HOH HOH . K 5 HOH B 27 727 13 HOH HOH . K 5 HOH B 28 728 36 HOH HOH . K 5 HOH B 29 729 25 HOH HOH . K 5 HOH B 30 730 110 HOH HOH . K 5 HOH B 31 731 106 HOH HOH . K 5 HOH B 32 732 125 HOH HOH . K 5 HOH B 33 733 2 HOH HOH . K 5 HOH B 34 734 197 HOH HOH . K 5 HOH B 35 735 24 HOH HOH . K 5 HOH B 36 736 113 HOH HOH . K 5 HOH B 37 737 148 HOH HOH . K 5 HOH B 38 738 112 HOH HOH . K 5 HOH B 39 739 105 HOH HOH . K 5 HOH B 40 740 108 HOH HOH . K 5 HOH B 41 741 49 HOH HOH . K 5 HOH B 42 742 109 HOH HOH . K 5 HOH B 43 743 44 HOH HOH . K 5 HOH B 44 744 54 HOH HOH . K 5 HOH B 45 745 170 HOH HOH . K 5 HOH B 46 746 168 HOH HOH . K 5 HOH B 47 747 92 HOH HOH . K 5 HOH B 48 748 221 HOH HOH . K 5 HOH B 49 749 43 HOH HOH . K 5 HOH B 50 750 128 HOH HOH . K 5 HOH B 51 751 171 HOH HOH . K 5 HOH B 52 752 160 HOH HOH . K 5 HOH B 53 753 147 HOH HOH . K 5 HOH B 54 754 58 HOH HOH . K 5 HOH B 55 755 207 HOH HOH . K 5 HOH B 56 756 127 HOH HOH . K 5 HOH B 57 757 146 HOH HOH . K 5 HOH B 58 758 117 HOH HOH . K 5 HOH B 59 759 152 HOH HOH . K 5 HOH B 60 760 149 HOH HOH . K 5 HOH B 61 761 159 HOH HOH . K 5 HOH B 62 762 232 HOH HOH . K 5 HOH B 63 763 229 HOH HOH . K 5 HOH B 64 764 234 HOH HOH . K 5 HOH B 65 765 5 HOH HOH . K 5 HOH B 66 766 194 HOH HOH . K 5 HOH B 67 767 169 HOH HOH . K 5 HOH B 68 768 129 HOH HOH . K 5 HOH B 69 769 203 HOH HOH . K 5 HOH B 70 770 124 HOH HOH . K 5 HOH B 71 771 156 HOH HOH . K 5 HOH B 72 772 218 HOH HOH . K 5 HOH B 73 773 157 HOH HOH . K 5 HOH B 74 774 209 HOH HOH . K 5 HOH B 75 775 208 HOH HOH . K 5 HOH B 76 776 219 HOH HOH . K 5 HOH B 77 777 116 HOH HOH . K 5 HOH B 78 778 153 HOH HOH . K 5 HOH B 79 779 225 HOH HOH . K 5 HOH B 80 780 107 HOH HOH . K 5 HOH B 81 781 158 HOH HOH . L 5 HOH D 1 701 231 HOH HOH . L 5 HOH D 2 702 230 HOH HOH . L 5 HOH D 3 703 150 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 3 1.393 -6.564 61.687 1 43.85 ? C1 GOL 601 B 1 HETATM 2 O O1 GOL . . . G 3 1.901 -7.332 62.725 1 49.58 ? O1 GOL 601 B 1 HETATM 3 C C2 GOL . . . G 3 1.85 -5.117 61.888 1 50.27 ? C2 GOL 601 B 1 HETATM 4 O O2 GOL . . . G 3 0.77 -4.323 62.133 1 52.71 ? O2 GOL 601 B 1 HETATM 5 C C3 GOL . . . G 3 2.837 -5.136 63.088 1 52.44 ? C3 GOL 601 B 1 HETATM 6 O O3 GOL . . . G 3 4.118 -5.29 62.556 1 52.07 ? O3 GOL 601 B 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #