data_4MG5 # _model_server_result.job_id ib2XkkGWwO6dxANxMpH13A _model_server_result.datetime_utc '2024-11-24 16:29:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4mg5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":603}' # _entry.id 4MG5 # _exptl.entry_id 4MG5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 508.652 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description chlordecone _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.28 _cell.angle_gamma 90 _cell.entry_id 4MG5 _cell.length_a 54.7 _cell.length_b 81.78 _cell.length_c 58.56 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4MG5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 83 A GLU 380 1_555 A N CSO 84 A CSO 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 A C CSO 84 A CSO 381 1_555 A N ALA 85 A ALA 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 A C LYS 232 A LYS 529 1_555 A N CSO 233 A CSO 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 A C CSO 233 A CSO 530 1_555 A N LYS 234 A LYS 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale5 B C GLU 83 B GLU 380 1_555 B N CSO 84 B CSO 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale6 B C CSO 84 B CSO 381 1_555 B N ALA 85 B ALA 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale7 B C LYS 232 B LYS 529 1_555 B N CSO 233 B CSO 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale8 B C CSO 233 B CSO 530 1_555 B N LYS 234 B LYS 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? # _chem_comp.formula 'C10 H2 Cl10 O2' _chem_comp.formula_weight 508.652 _chem_comp.id A1AQV _chem_comp.mon_nstd_flag . _chem_comp.name chlordecone _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (1R,1as,3s,3aR,4r,5ar,5bS,6S)-1,1a,3,3a,4,5,5,5a,5b,6-decachlorooctahydro-2H-1,3,4-(methanetriyl)cyclobuta[cd]pentalene-2,2-diol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 A1AQV sing 1 n n C2 O3 A1AQV sing 2 n n C2 C4 A1AQV sing 3 n n C4 CL5 A1AQV sing 4 n n C4 C6 A1AQV sing 5 n n C6 CL7 A1AQV sing 6 n n C6 C8 A1AQV sing 7 n n C8 CL9 A1AQV sing 8 n n C8 C10 A1AQV sing 9 n n C10 CL11 A1AQV sing 10 n n C10 C12 A1AQV sing 11 n n C12 CL13 A1AQV sing 12 n n C12 C14 A1AQV sing 13 n n C14 CL15 A1AQV sing 14 n n C14 C16 A1AQV sing 15 n n C16 CL17 A1AQV sing 16 n n C16 C18 A1AQV sing 17 n n C18 CL19 A1AQV sing 18 n n C18 CL20 A1AQV sing 19 n n C18 C21 A1AQV sing 20 n n C21 CL22 A1AQV sing 21 n n C10 C2 A1AQV sing 22 n n C21 C12 A1AQV sing 23 n n C14 C4 A1AQV sing 24 n n C16 C6 A1AQV sing 25 n n C21 C8 A1AQV sing 26 n n O1 H1 A1AQV sing 27 n n O3 H3 A1AQV sing 28 n n # _atom_sites.entry_id 4MG5 _atom_sites.fract_transf_matrix[1][1] 0.018282 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006755 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012228 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018205 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GOL A 1 601 2 GOL GOL . F 4 A1AQV A 1 602 1 A1AQV CDD . G 3 GOL B 1 601 1 GOL GOL . H 3 GOL B 1 602 1 GOL GOL . I 4 A1AQV B 1 603 2 A1AQV CDD . J 5 HOH A 1 701 204 HOH HOH . J 5 HOH A 2 702 55 HOH HOH . J 5 HOH A 3 703 210 HOH HOH . J 5 HOH A 4 704 140 HOH HOH . J 5 HOH A 5 705 45 HOH HOH . J 5 HOH A 6 706 53 HOH HOH . J 5 HOH A 7 707 14 HOH HOH . J 5 HOH A 8 708 60 HOH HOH . J 5 HOH A 9 709 65 HOH HOH . J 5 HOH A 10 710 15 HOH HOH . J 5 HOH A 11 711 166 HOH HOH . J 5 HOH A 12 712 12 HOH HOH . J 5 HOH A 13 713 97 HOH HOH . J 5 HOH A 14 714 17 HOH HOH . J 5 HOH A 15 715 164 HOH HOH . J 5 HOH A 16 716 132 HOH HOH . J 5 HOH A 17 717 59 HOH HOH . J 5 HOH A 18 718 29 HOH HOH . J 5 HOH A 19 719 1 HOH HOH . J 5 HOH A 20 720 27 HOH HOH . J 5 HOH A 21 721 226 HOH HOH . J 5 HOH A 22 722 26 HOH HOH . J 5 HOH A 23 723 91 HOH HOH . J 5 HOH A 24 724 82 HOH HOH . J 5 HOH A 25 725 3 HOH HOH . J 5 HOH A 26 726 136 HOH HOH . J 5 HOH A 27 727 67 HOH HOH . J 5 HOH A 28 728 214 HOH HOH . J 5 HOH A 29 729 86 HOH HOH . J 5 HOH A 30 730 139 HOH HOH . J 5 HOH A 31 731 7 HOH HOH . J 5 HOH A 32 732 31 HOH HOH . J 5 HOH A 33 733 4 HOH HOH . J 5 HOH A 34 734 87 HOH HOH . J 5 HOH A 35 735 115 HOH HOH . J 5 HOH A 36 736 51 HOH HOH . J 5 HOH A 37 737 121 HOH HOH . J 5 HOH A 38 738 35 HOH HOH . J 5 HOH A 39 739 217 HOH HOH . J 5 HOH A 40 740 20 HOH HOH . J 5 HOH A 41 741 34 HOH HOH . J 5 HOH A 42 742 89 HOH HOH . J 5 HOH A 43 743 135 HOH HOH . J 5 HOH A 44 744 69 HOH HOH . J 5 HOH A 45 745 145 HOH HOH . J 5 HOH A 46 746 71 HOH HOH . J 5 HOH A 47 747 133 HOH HOH . J 5 HOH A 48 748 134 HOH HOH . J 5 HOH A 49 749 141 HOH HOH . J 5 HOH A 50 750 46 HOH HOH . J 5 HOH A 51 751 72 HOH HOH . J 5 HOH A 52 752 120 HOH HOH . J 5 HOH A 53 753 165 HOH HOH . J 5 HOH A 54 754 215 HOH HOH . J 5 HOH A 55 755 212 HOH HOH . J 5 HOH A 56 756 137 HOH HOH . J 5 HOH A 57 757 85 HOH HOH . J 5 HOH A 58 758 224 HOH HOH . J 5 HOH A 59 759 47 HOH HOH . J 5 HOH A 60 760 62 HOH HOH . J 5 HOH A 61 761 114 HOH HOH . J 5 HOH A 62 762 118 HOH HOH . J 5 HOH A 63 763 122 HOH HOH . J 5 HOH A 64 764 223 HOH HOH . J 5 HOH A 65 765 222 HOH HOH . J 5 HOH A 66 766 144 HOH HOH . J 5 HOH A 67 767 103 HOH HOH . J 5 HOH A 68 768 138 HOH HOH . J 5 HOH A 69 769 104 HOH HOH . J 5 HOH A 70 770 123 HOH HOH . J 5 HOH A 71 771 143 HOH HOH . J 5 HOH A 72 772 213 HOH HOH . J 5 HOH A 73 773 216 HOH HOH . J 5 HOH A 74 774 227 HOH HOH . J 5 HOH A 75 775 131 HOH HOH . J 5 HOH A 76 776 40 HOH HOH . K 5 HOH B 1 701 228 HOH HOH . K 5 HOH B 2 702 151 HOH HOH . K 5 HOH B 3 703 56 HOH HOH . K 5 HOH B 4 704 205 HOH HOH . K 5 HOH B 5 705 39 HOH HOH . K 5 HOH B 6 706 66 HOH HOH . K 5 HOH B 7 707 11 HOH HOH . K 5 HOH B 8 708 41 HOH HOH . K 5 HOH B 9 709 33 HOH HOH . K 5 HOH B 10 710 74 HOH HOH . K 5 HOH B 11 711 18 HOH HOH . K 5 HOH B 12 712 75 HOH HOH . K 5 HOH B 13 713 23 HOH HOH . K 5 HOH B 14 714 37 HOH HOH . K 5 HOH B 15 715 16 HOH HOH . K 5 HOH B 16 716 163 HOH HOH . K 5 HOH B 17 717 111 HOH HOH . K 5 HOH B 18 718 9 HOH HOH . K 5 HOH B 19 719 19 HOH HOH . K 5 HOH B 20 720 10 HOH HOH . K 5 HOH B 21 721 42 HOH HOH . K 5 HOH B 22 722 30 HOH HOH . K 5 HOH B 23 723 155 HOH HOH . K 5 HOH B 24 724 22 HOH HOH . K 5 HOH B 25 725 126 HOH HOH . K 5 HOH B 26 726 102 HOH HOH . K 5 HOH B 27 727 13 HOH HOH . K 5 HOH B 28 728 36 HOH HOH . K 5 HOH B 29 729 25 HOH HOH . K 5 HOH B 30 730 110 HOH HOH . K 5 HOH B 31 731 106 HOH HOH . K 5 HOH B 32 732 125 HOH HOH . K 5 HOH B 33 733 2 HOH HOH . K 5 HOH B 34 734 197 HOH HOH . K 5 HOH B 35 735 24 HOH HOH . K 5 HOH B 36 736 113 HOH HOH . K 5 HOH B 37 737 148 HOH HOH . K 5 HOH B 38 738 112 HOH HOH . K 5 HOH B 39 739 105 HOH HOH . K 5 HOH B 40 740 108 HOH HOH . K 5 HOH B 41 741 49 HOH HOH . K 5 HOH B 42 742 109 HOH HOH . K 5 HOH B 43 743 44 HOH HOH . K 5 HOH B 44 744 54 HOH HOH . K 5 HOH B 45 745 170 HOH HOH . K 5 HOH B 46 746 168 HOH HOH . K 5 HOH B 47 747 92 HOH HOH . K 5 HOH B 48 748 221 HOH HOH . K 5 HOH B 49 749 43 HOH HOH . K 5 HOH B 50 750 128 HOH HOH . K 5 HOH B 51 751 171 HOH HOH . K 5 HOH B 52 752 160 HOH HOH . K 5 HOH B 53 753 147 HOH HOH . K 5 HOH B 54 754 58 HOH HOH . K 5 HOH B 55 755 207 HOH HOH . K 5 HOH B 56 756 127 HOH HOH . K 5 HOH B 57 757 146 HOH HOH . K 5 HOH B 58 758 117 HOH HOH . K 5 HOH B 59 759 152 HOH HOH . K 5 HOH B 60 760 149 HOH HOH . K 5 HOH B 61 761 159 HOH HOH . K 5 HOH B 62 762 232 HOH HOH . K 5 HOH B 63 763 229 HOH HOH . K 5 HOH B 64 764 234 HOH HOH . K 5 HOH B 65 765 5 HOH HOH . K 5 HOH B 66 766 194 HOH HOH . K 5 HOH B 67 767 169 HOH HOH . K 5 HOH B 68 768 129 HOH HOH . K 5 HOH B 69 769 203 HOH HOH . K 5 HOH B 70 770 124 HOH HOH . K 5 HOH B 71 771 156 HOH HOH . K 5 HOH B 72 772 218 HOH HOH . K 5 HOH B 73 773 157 HOH HOH . K 5 HOH B 74 774 209 HOH HOH . K 5 HOH B 75 775 208 HOH HOH . K 5 HOH B 76 776 219 HOH HOH . K 5 HOH B 77 777 116 HOH HOH . K 5 HOH B 78 778 153 HOH HOH . K 5 HOH B 79 779 225 HOH HOH . K 5 HOH B 80 780 107 HOH HOH . K 5 HOH B 81 781 158 HOH HOH . L 5 HOH D 1 701 231 HOH HOH . L 5 HOH D 2 702 230 HOH HOH . L 5 HOH D 3 703 150 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 A1AQV . . . I 4 -13.125 -12.42 49.95 1 74.48 ? C4 A1AQV 603 B 1 HETATM 2 C C6 A1AQV . . . I 4 -14.118 -12.09 48.824 1 70.91 ? C6 A1AQV 603 B 1 HETATM 3 C C12 A1AQV . . . I 4 -11.861 -13.266 47.972 1 72.89 ? C12 A1AQV 603 B 1 HETATM 4 C C18 A1AQV . . . I 4 -14.073 -13.938 47.087 1 78.67 ? C18 A1AQV 603 B 1 HETATM 5 C C21 A1AQV . . . I 4 -12.89 -12.967 46.867 1 72.13 ? C21 A1AQV 603 B 1 HETATM 6 C C2 A1AQV . . . I 4 -11.916 -11.537 49.633 1 68.06 ? C2 A1AQV 603 B 1 HETATM 7 O O1 A1AQV . . . I 4 -12.127 -10.2 49.968 1 54.94 ? O1 A1AQV 603 B 1 HETATM 8 C C10 A1AQV . . . I 4 -11.75 -11.752 48.131 1 75.74 ? C10 A1AQV 603 B 1 HETATM 9 C C14 A1AQV . . . I 4 -12.815 -13.727 49.216 1 70.79 ? C14 A1AQV 603 B 1 HETATM 10 C C16 A1AQV . . . I 4 -14.228 -13.611 48.599 1 70.66 ? C16 A1AQV 603 B 1 HETATM 11 C C8 A1AQV . . . I 4 -13.172 -11.627 47.584 1 70.79 ? C8 A1AQV 603 B 1 HETATM 12 O O3 A1AQV . . . I 4 -10.758 -11.972 50.275 1 59.86 ? O3 A1AQV 603 B 1 HETATM 13 CL CL11 A1AQV . . . I 4 -10.467 -10.853 47.407 0.5 85.36 ? CL11 A1AQV 603 B 1 HETATM 14 CL CL13 A1AQV . . . I 4 -10.449 -14.244 47.683 1 77.34 ? CL13 A1AQV 603 B 1 HETATM 15 CL CL15 A1AQV . . . I 4 -12.308 -15.148 50.081 0.61 81.52 ? CL15 A1AQV 603 B 1 HETATM 16 CL CL17 A1AQV . . . I 4 -15.571 -14.359 49.405 0.65 70.2 ? CL17 A1AQV 603 B 1 HETATM 17 CL CL19 A1AQV . . . I 4 -13.651 -15.625 46.766 0.73 76.74 ? CL19 A1AQV 603 B 1 HETATM 18 CL CL20 A1AQV . . . I 4 -15.498 -13.543 46.116 0.69 71.81 ? CL20 A1AQV 603 B 1 HETATM 19 CL CL22 A1AQV . . . I 4 -12.31 -12.85 45.24 0.55 74.98 ? CL22 A1AQV 603 B 1 HETATM 20 CL CL5 A1AQV . . . I 4 -13.587 -12.304 51.629 0.76 59.15 ? CL5 A1AQV 603 B 1 HETATM 21 CL CL7 A1AQV . . . I 4 -15.521 -11.11 49.139 0.65 74.47 ? CL7 A1AQV 603 B 1 HETATM 22 CL CL9 A1AQV . . . I 4 -13.669 -10.2 46.714 1 66.29 ? CL9 A1AQV 603 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 22 #