data_4MG7 # _model_server_result.job_id 3iJslC3CRwmaQBbDFAbKow _model_server_result.datetime_utc '2024-10-12 13:17:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4mg7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":602}' # _entry.id 4MG7 # _exptl.entry_id 4MG7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.78 _cell.angle_gamma 90 _cell.entry_id 4MG7 _cell.length_a 54.55 _cell.length_b 81.62 _cell.length_c 58.48 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4MG7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 83 A GLU 380 1_555 A N CSO 84 A CSO 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C CSO 84 A CSO 381 1_555 A N ALA 85 A ALA 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 B C GLU 83 B GLU 380 1_555 B N CSO 84 B CSO 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 B C CSO 84 B CSO 381 1_555 B N ALA 85 B ALA 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 B C LYS 119 B LYS 416 1_555 B N CSO 120 B CSO 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 B C CSO 120 B CSO 417 1_555 B N VAL 121 B VAL 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale7 B C LYS 232 B LYS 529 1_555 B N CSO 233 B CSO 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale8 B C CSO 233 B CSO 530 1_555 B N LYS 234 B LYS 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 155 n n C1 C2 EDO sing 156 n n C1 H11 EDO sing 157 n n C1 H12 EDO sing 158 n n O1 HO1 EDO sing 159 n n C2 O2 EDO sing 160 n n C2 H21 EDO sing 161 n n C2 H22 EDO sing 162 n n O2 HO2 EDO sing 163 n n # _atom_sites.entry_id 4MG7 _atom_sites.fract_transf_matrix[1][1] 0.018332 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006593 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012252 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018172 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 27H A 1 601 1 27H DRG . F 5 EDO A 1 602 1 EDO EDO . G 4 27H B 1 601 1 27H DRG . H 5 EDO B 1 602 2 EDO EDO . I 6 HOH A 1 701 1 HOH HOH . I 6 HOH A 2 702 3 HOH HOH . I 6 HOH A 3 703 4 HOH HOH . I 6 HOH A 4 704 7 HOH HOH . I 6 HOH A 5 705 8 HOH HOH . I 6 HOH A 6 706 10 HOH HOH . I 6 HOH A 7 707 14 HOH HOH . I 6 HOH A 8 708 16 HOH HOH . I 6 HOH A 9 709 17 HOH HOH . I 6 HOH A 10 710 18 HOH HOH . I 6 HOH A 11 711 20 HOH HOH . I 6 HOH A 12 712 21 HOH HOH . I 6 HOH A 13 713 22 HOH HOH . I 6 HOH A 14 714 24 HOH HOH . I 6 HOH A 15 715 25 HOH HOH . I 6 HOH A 16 716 28 HOH HOH . I 6 HOH A 17 717 29 HOH HOH . I 6 HOH A 18 718 30 HOH HOH . I 6 HOH A 19 719 34 HOH HOH . I 6 HOH A 20 720 35 HOH HOH . I 6 HOH A 21 721 44 HOH HOH . I 6 HOH A 22 722 45 HOH HOH . I 6 HOH A 23 723 46 HOH HOH . I 6 HOH A 24 724 47 HOH HOH . I 6 HOH A 25 725 49 HOH HOH . I 6 HOH A 26 726 50 HOH HOH . I 6 HOH A 27 727 54 HOH HOH . I 6 HOH A 28 728 55 HOH HOH . I 6 HOH A 29 729 56 HOH HOH . I 6 HOH A 30 730 57 HOH HOH . I 6 HOH A 31 731 58 HOH HOH . I 6 HOH A 32 732 59 HOH HOH . I 6 HOH A 33 733 61 HOH HOH . I 6 HOH A 34 734 65 HOH HOH . I 6 HOH A 35 735 68 HOH HOH . I 6 HOH A 36 736 69 HOH HOH . I 6 HOH A 37 737 74 HOH HOH . I 6 HOH A 38 738 76 HOH HOH . I 6 HOH A 39 739 78 HOH HOH . I 6 HOH A 40 740 79 HOH HOH . I 6 HOH A 41 741 82 HOH HOH . I 6 HOH A 42 742 83 HOH HOH . I 6 HOH A 43 743 85 HOH HOH . I 6 HOH A 44 744 87 HOH HOH . I 6 HOH A 45 745 88 HOH HOH . I 6 HOH A 46 746 90 HOH HOH . I 6 HOH A 47 747 91 HOH HOH . I 6 HOH A 48 748 92 HOH HOH . I 6 HOH A 49 749 93 HOH HOH . I 6 HOH A 50 750 95 HOH HOH . I 6 HOH A 51 751 96 HOH HOH . I 6 HOH A 52 752 97 HOH HOH . I 6 HOH A 53 753 98 HOH HOH . I 6 HOH A 54 754 99 HOH HOH . I 6 HOH A 55 755 107 HOH HOH . I 6 HOH A 56 756 109 HOH HOH . I 6 HOH A 57 757 110 HOH HOH . I 6 HOH A 58 758 111 HOH HOH . I 6 HOH A 59 759 112 HOH HOH . I 6 HOH A 60 760 115 HOH HOH . I 6 HOH A 61 761 118 HOH HOH . I 6 HOH A 62 762 119 HOH HOH . I 6 HOH A 63 763 123 HOH HOH . I 6 HOH A 64 764 124 HOH HOH . I 6 HOH A 65 765 127 HOH HOH . I 6 HOH A 66 766 128 HOH HOH . I 6 HOH A 67 767 129 HOH HOH . I 6 HOH A 68 768 134 HOH HOH . I 6 HOH A 69 769 137 HOH HOH . I 6 HOH A 70 770 140 HOH HOH . I 6 HOH A 71 771 141 HOH HOH . I 6 HOH A 72 772 143 HOH HOH . I 6 HOH A 73 773 145 HOH HOH . I 6 HOH A 74 774 148 HOH HOH . I 6 HOH A 75 775 150 HOH HOH . I 6 HOH A 76 776 151 HOH HOH . I 6 HOH A 77 777 154 HOH HOH . I 6 HOH A 78 778 155 HOH HOH . I 6 HOH A 79 779 157 HOH HOH . I 6 HOH A 80 780 159 HOH HOH . I 6 HOH A 81 781 160 HOH HOH . I 6 HOH A 82 782 161 HOH HOH . I 6 HOH A 83 783 163 HOH HOH . I 6 HOH A 84 784 186 HOH HOH . I 6 HOH A 85 785 190 HOH HOH . I 6 HOH A 86 786 192 HOH HOH . I 6 HOH A 87 787 193 HOH HOH . I 6 HOH A 88 788 194 HOH HOH . I 6 HOH A 89 789 198 HOH HOH . I 6 HOH A 90 790 199 HOH HOH . I 6 HOH A 91 791 202 HOH HOH . I 6 HOH A 92 792 205 HOH HOH . I 6 HOH A 93 793 206 HOH HOH . I 6 HOH A 94 794 207 HOH HOH . I 6 HOH A 95 795 208 HOH HOH . I 6 HOH A 96 796 210 HOH HOH . I 6 HOH A 97 797 216 HOH HOH . I 6 HOH A 98 798 218 HOH HOH . I 6 HOH A 99 799 224 HOH HOH . I 6 HOH A 100 800 228 HOH HOH . I 6 HOH A 101 801 230 HOH HOH . I 6 HOH A 102 802 231 HOH HOH . I 6 HOH A 103 803 233 HOH HOH . I 6 HOH A 104 804 234 HOH HOH . I 6 HOH A 105 805 238 HOH HOH . I 6 HOH A 106 806 243 HOH HOH . I 6 HOH A 107 807 248 HOH HOH . I 6 HOH A 108 808 249 HOH HOH . I 6 HOH A 109 809 251 HOH HOH . I 6 HOH A 110 810 255 HOH HOH . I 6 HOH A 111 811 259 HOH HOH . I 6 HOH A 112 812 265 HOH HOH . I 6 HOH A 113 813 273 HOH HOH . I 6 HOH A 114 814 279 HOH HOH . I 6 HOH A 115 815 283 HOH HOH . I 6 HOH A 116 816 284 HOH HOH . I 6 HOH A 117 817 285 HOH HOH . I 6 HOH A 118 818 293 HOH HOH . I 6 HOH A 119 819 297 HOH HOH . I 6 HOH A 120 820 301 HOH HOH . I 6 HOH A 121 821 303 HOH HOH . I 6 HOH A 122 822 315 HOH HOH . I 6 HOH A 123 823 319 HOH HOH . I 6 HOH A 124 824 320 HOH HOH . I 6 HOH A 125 825 327 HOH HOH . I 6 HOH A 126 826 328 HOH HOH . I 6 HOH A 127 827 329 HOH HOH . I 6 HOH A 128 828 330 HOH HOH . I 6 HOH A 129 829 332 HOH HOH . I 6 HOH A 130 830 310 HOH HOH . J 6 HOH B 1 701 318 HOH HOH . J 6 HOH B 2 702 5 HOH HOH . J 6 HOH B 3 703 6 HOH HOH . J 6 HOH B 4 704 9 HOH HOH . J 6 HOH B 5 705 11 HOH HOH . J 6 HOH B 6 706 12 HOH HOH . J 6 HOH B 7 707 13 HOH HOH . J 6 HOH B 8 708 15 HOH HOH . J 6 HOH B 9 709 19 HOH HOH . J 6 HOH B 10 710 23 HOH HOH . J 6 HOH B 11 711 26 HOH HOH . J 6 HOH B 12 712 27 HOH HOH . J 6 HOH B 13 713 32 HOH HOH . J 6 HOH B 14 714 33 HOH HOH . J 6 HOH B 15 715 37 HOH HOH . J 6 HOH B 16 716 38 HOH HOH . J 6 HOH B 17 717 40 HOH HOH . J 6 HOH B 18 718 41 HOH HOH . J 6 HOH B 19 719 43 HOH HOH . J 6 HOH B 20 720 48 HOH HOH . J 6 HOH B 21 721 52 HOH HOH . J 6 HOH B 22 722 53 HOH HOH . J 6 HOH B 23 723 60 HOH HOH . J 6 HOH B 24 724 62 HOH HOH . J 6 HOH B 25 725 63 HOH HOH . J 6 HOH B 26 726 64 HOH HOH . J 6 HOH B 27 727 66 HOH HOH . J 6 HOH B 28 728 67 HOH HOH . J 6 HOH B 29 729 71 HOH HOH . J 6 HOH B 30 730 72 HOH HOH . J 6 HOH B 31 731 77 HOH HOH . J 6 HOH B 32 732 80 HOH HOH . J 6 HOH B 33 733 81 HOH HOH . J 6 HOH B 34 734 86 HOH HOH . J 6 HOH B 35 735 94 HOH HOH . J 6 HOH B 36 736 101 HOH HOH . J 6 HOH B 37 737 103 HOH HOH . J 6 HOH B 38 738 105 HOH HOH . J 6 HOH B 39 739 106 HOH HOH . J 6 HOH B 40 740 114 HOH HOH . J 6 HOH B 41 741 120 HOH HOH . J 6 HOH B 42 742 121 HOH HOH . J 6 HOH B 43 743 130 HOH HOH . J 6 HOH B 44 744 138 HOH HOH . J 6 HOH B 45 745 142 HOH HOH . J 6 HOH B 46 746 144 HOH HOH . J 6 HOH B 47 747 153 HOH HOH . J 6 HOH B 48 748 156 HOH HOH . J 6 HOH B 49 749 158 HOH HOH . J 6 HOH B 50 750 162 HOH HOH . J 6 HOH B 51 751 164 HOH HOH . J 6 HOH B 52 752 165 HOH HOH . J 6 HOH B 53 753 166 HOH HOH . J 6 HOH B 54 754 167 HOH HOH . J 6 HOH B 55 755 168 HOH HOH . J 6 HOH B 56 756 169 HOH HOH . J 6 HOH B 57 757 170 HOH HOH . J 6 HOH B 58 758 171 HOH HOH . J 6 HOH B 59 759 172 HOH HOH . J 6 HOH B 60 760 173 HOH HOH . J 6 HOH B 61 761 174 HOH HOH . J 6 HOH B 62 762 175 HOH HOH . J 6 HOH B 63 763 176 HOH HOH . J 6 HOH B 64 764 177 HOH HOH . J 6 HOH B 65 765 178 HOH HOH . J 6 HOH B 66 766 179 HOH HOH . J 6 HOH B 67 767 180 HOH HOH . J 6 HOH B 68 768 181 HOH HOH . J 6 HOH B 69 769 182 HOH HOH . J 6 HOH B 70 770 183 HOH HOH . J 6 HOH B 71 771 184 HOH HOH . J 6 HOH B 72 772 185 HOH HOH . J 6 HOH B 73 773 195 HOH HOH . J 6 HOH B 74 774 196 HOH HOH . J 6 HOH B 75 775 197 HOH HOH . J 6 HOH B 76 776 201 HOH HOH . J 6 HOH B 77 777 203 HOH HOH . J 6 HOH B 78 778 204 HOH HOH . J 6 HOH B 79 779 211 HOH HOH . J 6 HOH B 80 780 212 HOH HOH . J 6 HOH B 81 781 214 HOH HOH . J 6 HOH B 82 782 217 HOH HOH . J 6 HOH B 83 783 220 HOH HOH . J 6 HOH B 84 784 222 HOH HOH . J 6 HOH B 85 785 226 HOH HOH . J 6 HOH B 86 786 227 HOH HOH . J 6 HOH B 87 787 232 HOH HOH . J 6 HOH B 88 788 241 HOH HOH . J 6 HOH B 89 789 246 HOH HOH . J 6 HOH B 90 790 253 HOH HOH . J 6 HOH B 91 791 254 HOH HOH . J 6 HOH B 92 792 257 HOH HOH . J 6 HOH B 93 793 260 HOH HOH . J 6 HOH B 94 794 261 HOH HOH . J 6 HOH B 95 795 264 HOH HOH . J 6 HOH B 96 796 269 HOH HOH . J 6 HOH B 97 797 270 HOH HOH . J 6 HOH B 98 798 271 HOH HOH . J 6 HOH B 99 799 280 HOH HOH . J 6 HOH B 100 800 282 HOH HOH . J 6 HOH B 101 801 286 HOH HOH . J 6 HOH B 102 802 287 HOH HOH . J 6 HOH B 103 803 288 HOH HOH . J 6 HOH B 104 804 289 HOH HOH . J 6 HOH B 105 805 290 HOH HOH . J 6 HOH B 106 806 291 HOH HOH . J 6 HOH B 107 807 292 HOH HOH . J 6 HOH B 108 808 294 HOH HOH . J 6 HOH B 109 809 295 HOH HOH . J 6 HOH B 110 810 296 HOH HOH . J 6 HOH B 111 811 298 HOH HOH . J 6 HOH B 112 812 299 HOH HOH . J 6 HOH B 113 813 302 HOH HOH . J 6 HOH B 114 814 305 HOH HOH . J 6 HOH B 115 815 306 HOH HOH . J 6 HOH B 116 816 307 HOH HOH . J 6 HOH B 117 817 309 HOH HOH . J 6 HOH B 118 818 311 HOH HOH . J 6 HOH B 119 819 312 HOH HOH . J 6 HOH B 120 820 313 HOH HOH . J 6 HOH B 121 821 314 HOH HOH . J 6 HOH B 122 822 316 HOH HOH . J 6 HOH B 123 823 317 HOH HOH . J 6 HOH B 124 824 321 HOH HOH . J 6 HOH B 125 825 322 HOH HOH . J 6 HOH B 126 826 323 HOH HOH . J 6 HOH B 127 827 324 HOH HOH . J 6 HOH B 128 828 325 HOH HOH . J 6 HOH B 129 829 326 HOH HOH . J 6 HOH B 130 830 331 HOH HOH . K 6 HOH C 1 701 113 HOH HOH . K 6 HOH C 2 702 300 HOH HOH . L 6 HOH D 1 701 237 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . H 5 1.265 -5.268 61.539 1 28.42 ? C1 EDO 602 B 1 HETATM 2 O O1 EDO . . . H 5 0.071 -5.491 62.245 1 37.64 ? O1 EDO 602 B 1 HETATM 3 C C2 EDO . . . H 5 2.35 -5.957 62.306 1 35.63 ? C2 EDO 602 B 1 HETATM 4 O O2 EDO . . . H 5 1.873 -7.184 62.82 1 38.04 ? O2 EDO 602 B 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 4 #