data_4MG9 # _model_server_result.job_id nmTEckuPHYiWEsPXChgR7g _model_server_result.datetime_utc '2024-11-24 05:33:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4mg9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":602}' # _entry.id 4MG9 # _exptl.entry_id 4MG9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.06 _cell.angle_gamma 90 _cell.entry_id 4MG9 _cell.length_a 54.92 _cell.length_b 81.55 _cell.length_c 58.26 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4MG9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 83 A GLU 380 1_555 A N CSO 84 A CSO 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale2 A C CSO 84 A CSO 381 1_555 A N ALA 85 A ALA 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 B C GLU 83 B GLU 380 1_555 B N CSO 84 B CSO 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 B C CSO 84 B CSO 381 1_555 B N ALA 85 B ALA 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 B C LYS 119 B LYS 416 1_555 B N CSO 120 B CSO 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 B C CSO 120 B CSO 417 1_555 B N VAL 121 B VAL 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale7 B C LYS 232 B LYS 529 1_555 B N CSO 233 B CSO 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale8 B C CSO 233 B CSO 530 1_555 B N LYS 234 B LYS 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 171 n n C1 C2 GOL sing 172 n n C1 H11 GOL sing 173 n n C1 H12 GOL sing 174 n n O1 HO1 GOL sing 175 n n C2 O2 GOL sing 176 n n C2 C3 GOL sing 177 n n C2 H2 GOL sing 178 n n O2 HO2 GOL sing 179 n n C3 O3 GOL sing 180 n n C3 H31 GOL sing 181 n n C3 H32 GOL sing 182 n n O3 HO3 GOL sing 183 n n # _atom_sites.entry_id 4MG9 _atom_sites.fract_transf_matrix[1][1] 0.018208 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006647 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012262 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018273 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 27K A 1 601 1 27K DRG . F 5 GOL A 1 602 1 GOL GOL . G 4 27K B 1 601 1 27K DRG . H 5 GOL B 1 602 1 GOL GOL . I 6 HOH A 1 701 1 HOH HOH . I 6 HOH A 2 702 2 HOH HOH . I 6 HOH A 3 703 3 HOH HOH . I 6 HOH A 4 704 4 HOH HOH . I 6 HOH A 5 705 5 HOH HOH . I 6 HOH A 6 706 7 HOH HOH . I 6 HOH A 7 707 10 HOH HOH . I 6 HOH A 8 708 15 HOH HOH . I 6 HOH A 9 709 17 HOH HOH . I 6 HOH A 10 710 18 HOH HOH . I 6 HOH A 11 711 25 HOH HOH . I 6 HOH A 12 712 26 HOH HOH . I 6 HOH A 13 713 27 HOH HOH . I 6 HOH A 14 714 28 HOH HOH . I 6 HOH A 15 715 29 HOH HOH . I 6 HOH A 16 716 30 HOH HOH . I 6 HOH A 17 717 31 HOH HOH . I 6 HOH A 18 718 32 HOH HOH . I 6 HOH A 19 719 34 HOH HOH . I 6 HOH A 20 720 38 HOH HOH . I 6 HOH A 21 721 39 HOH HOH . I 6 HOH A 22 722 42 HOH HOH . I 6 HOH A 23 723 44 HOH HOH . I 6 HOH A 24 724 46 HOH HOH . I 6 HOH A 25 725 47 HOH HOH . I 6 HOH A 26 726 51 HOH HOH . I 6 HOH A 27 727 52 HOH HOH . I 6 HOH A 28 728 56 HOH HOH . I 6 HOH A 29 729 58 HOH HOH . I 6 HOH A 30 730 60 HOH HOH . I 6 HOH A 31 731 61 HOH HOH . I 6 HOH A 32 732 63 HOH HOH . I 6 HOH A 33 733 68 HOH HOH . I 6 HOH A 34 734 70 HOH HOH . I 6 HOH A 35 735 73 HOH HOH . I 6 HOH A 36 736 75 HOH HOH . I 6 HOH A 37 737 79 HOH HOH . I 6 HOH A 38 738 80 HOH HOH . I 6 HOH A 39 739 81 HOH HOH . I 6 HOH A 40 740 82 HOH HOH . I 6 HOH A 41 741 88 HOH HOH . I 6 HOH A 42 742 90 HOH HOH . I 6 HOH A 43 743 92 HOH HOH . I 6 HOH A 44 744 93 HOH HOH . I 6 HOH A 45 745 96 HOH HOH . I 6 HOH A 46 746 98 HOH HOH . I 6 HOH A 47 747 100 HOH HOH . I 6 HOH A 48 748 101 HOH HOH . I 6 HOH A 49 749 106 HOH HOH . I 6 HOH A 50 750 107 HOH HOH . I 6 HOH A 51 751 109 HOH HOH . I 6 HOH A 52 752 110 HOH HOH . I 6 HOH A 53 753 111 HOH HOH . I 6 HOH A 54 754 112 HOH HOH . I 6 HOH A 55 755 113 HOH HOH . I 6 HOH A 56 756 114 HOH HOH . I 6 HOH A 57 757 115 HOH HOH . I 6 HOH A 58 758 116 HOH HOH . I 6 HOH A 59 759 117 HOH HOH . I 6 HOH A 60 760 121 HOH HOH . I 6 HOH A 61 761 138 HOH HOH . I 6 HOH A 62 762 140 HOH HOH . I 6 HOH A 63 763 141 HOH HOH . I 6 HOH A 64 764 143 HOH HOH . I 6 HOH A 65 765 149 HOH HOH . I 6 HOH A 66 766 156 HOH HOH . I 6 HOH A 67 767 159 HOH HOH . I 6 HOH A 68 768 160 HOH HOH . I 6 HOH A 69 769 161 HOH HOH . I 6 HOH A 70 770 162 HOH HOH . I 6 HOH A 71 771 165 HOH HOH . I 6 HOH A 72 772 166 HOH HOH . I 6 HOH A 73 773 167 HOH HOH . I 6 HOH A 74 774 169 HOH HOH . I 6 HOH A 75 775 170 HOH HOH . I 6 HOH A 76 776 172 HOH HOH . I 6 HOH A 77 777 182 HOH HOH . I 6 HOH A 78 778 183 HOH HOH . I 6 HOH A 79 779 184 HOH HOH . I 6 HOH A 80 780 185 HOH HOH . I 6 HOH A 81 781 188 HOH HOH . I 6 HOH A 82 782 189 HOH HOH . I 6 HOH A 83 783 190 HOH HOH . I 6 HOH A 84 784 191 HOH HOH . I 6 HOH A 85 785 192 HOH HOH . I 6 HOH A 86 786 193 HOH HOH . I 6 HOH A 87 787 194 HOH HOH . I 6 HOH A 88 788 195 HOH HOH . I 6 HOH A 89 789 196 HOH HOH . I 6 HOH A 90 790 197 HOH HOH . I 6 HOH A 91 791 198 HOH HOH . I 6 HOH A 92 792 200 HOH HOH . I 6 HOH A 93 793 201 HOH HOH . I 6 HOH A 94 794 217 HOH HOH . I 6 HOH A 95 795 218 HOH HOH . I 6 HOH A 96 796 232 HOH HOH . I 6 HOH A 97 797 233 HOH HOH . I 6 HOH A 98 798 234 HOH HOH . I 6 HOH A 99 799 235 HOH HOH . I 6 HOH A 100 800 237 HOH HOH . I 6 HOH A 101 801 242 HOH HOH . I 6 HOH A 102 802 243 HOH HOH . I 6 HOH A 103 803 244 HOH HOH . I 6 HOH A 104 804 248 HOH HOH . I 6 HOH A 105 805 250 HOH HOH . J 6 HOH B 1 801 240 HOH HOH . J 6 HOH B 2 802 8 HOH HOH . J 6 HOH B 3 803 9 HOH HOH . J 6 HOH B 4 804 11 HOH HOH . J 6 HOH B 5 805 13 HOH HOH . J 6 HOH B 6 806 14 HOH HOH . J 6 HOH B 7 807 16 HOH HOH . J 6 HOH B 8 808 19 HOH HOH . J 6 HOH B 9 809 20 HOH HOH . J 6 HOH B 10 810 21 HOH HOH . J 6 HOH B 11 811 22 HOH HOH . J 6 HOH B 12 812 23 HOH HOH . J 6 HOH B 13 813 33 HOH HOH . J 6 HOH B 14 814 35 HOH HOH . J 6 HOH B 15 815 36 HOH HOH . J 6 HOH B 16 816 40 HOH HOH . J 6 HOH B 17 817 43 HOH HOH . J 6 HOH B 18 818 48 HOH HOH . J 6 HOH B 19 819 49 HOH HOH . J 6 HOH B 20 820 50 HOH HOH . J 6 HOH B 21 821 54 HOH HOH . J 6 HOH B 22 822 55 HOH HOH . J 6 HOH B 23 823 57 HOH HOH . J 6 HOH B 24 824 59 HOH HOH . J 6 HOH B 25 825 62 HOH HOH . J 6 HOH B 26 826 65 HOH HOH . J 6 HOH B 27 827 66 HOH HOH . J 6 HOH B 28 828 69 HOH HOH . J 6 HOH B 29 829 72 HOH HOH . J 6 HOH B 30 830 76 HOH HOH . J 6 HOH B 31 831 77 HOH HOH . J 6 HOH B 32 832 78 HOH HOH . J 6 HOH B 33 833 83 HOH HOH . J 6 HOH B 34 834 86 HOH HOH . J 6 HOH B 35 835 94 HOH HOH . J 6 HOH B 36 836 97 HOH HOH . J 6 HOH B 37 837 102 HOH HOH . J 6 HOH B 38 838 108 HOH HOH . J 6 HOH B 39 839 118 HOH HOH . J 6 HOH B 40 840 119 HOH HOH . J 6 HOH B 41 841 120 HOH HOH . J 6 HOH B 42 842 122 HOH HOH . J 6 HOH B 43 843 123 HOH HOH . J 6 HOH B 44 844 124 HOH HOH . J 6 HOH B 45 845 125 HOH HOH . J 6 HOH B 46 846 129 HOH HOH . J 6 HOH B 47 847 130 HOH HOH . J 6 HOH B 48 848 131 HOH HOH . J 6 HOH B 49 849 132 HOH HOH . J 6 HOH B 50 850 133 HOH HOH . J 6 HOH B 51 851 134 HOH HOH . J 6 HOH B 52 852 135 HOH HOH . J 6 HOH B 53 853 136 HOH HOH . J 6 HOH B 54 854 137 HOH HOH . J 6 HOH B 55 855 139 HOH HOH . J 6 HOH B 56 856 142 HOH HOH . J 6 HOH B 57 857 144 HOH HOH . J 6 HOH B 58 858 145 HOH HOH . J 6 HOH B 59 859 146 HOH HOH . J 6 HOH B 60 860 147 HOH HOH . J 6 HOH B 61 861 148 HOH HOH . J 6 HOH B 62 862 150 HOH HOH . J 6 HOH B 63 863 151 HOH HOH . J 6 HOH B 64 864 152 HOH HOH . J 6 HOH B 65 865 153 HOH HOH . J 6 HOH B 66 866 154 HOH HOH . J 6 HOH B 67 867 155 HOH HOH . J 6 HOH B 68 868 158 HOH HOH . J 6 HOH B 69 869 163 HOH HOH . J 6 HOH B 70 870 164 HOH HOH . J 6 HOH B 71 871 171 HOH HOH . J 6 HOH B 72 872 173 HOH HOH . J 6 HOH B 73 873 174 HOH HOH . J 6 HOH B 74 874 175 HOH HOH . J 6 HOH B 75 875 176 HOH HOH . J 6 HOH B 76 876 186 HOH HOH . J 6 HOH B 77 877 187 HOH HOH . J 6 HOH B 78 878 202 HOH HOH . J 6 HOH B 79 879 203 HOH HOH . J 6 HOH B 80 880 204 HOH HOH . J 6 HOH B 81 881 205 HOH HOH . J 6 HOH B 82 882 206 HOH HOH . J 6 HOH B 83 883 207 HOH HOH . J 6 HOH B 84 884 208 HOH HOH . J 6 HOH B 85 885 209 HOH HOH . J 6 HOH B 86 886 210 HOH HOH . J 6 HOH B 87 887 211 HOH HOH . J 6 HOH B 88 888 212 HOH HOH . J 6 HOH B 89 889 213 HOH HOH . J 6 HOH B 90 890 214 HOH HOH . J 6 HOH B 91 891 215 HOH HOH . J 6 HOH B 92 892 216 HOH HOH . J 6 HOH B 93 893 222 HOH HOH . J 6 HOH B 94 894 223 HOH HOH . J 6 HOH B 95 895 224 HOH HOH . J 6 HOH B 96 896 225 HOH HOH . J 6 HOH B 97 897 226 HOH HOH . J 6 HOH B 98 898 227 HOH HOH . J 6 HOH B 99 899 228 HOH HOH . J 6 HOH B 100 900 229 HOH HOH . J 6 HOH B 101 901 230 HOH HOH . J 6 HOH B 102 902 236 HOH HOH . J 6 HOH B 103 903 238 HOH HOH . J 6 HOH B 104 904 239 HOH HOH . J 6 HOH B 105 905 241 HOH HOH . J 6 HOH B 106 906 245 HOH HOH . J 6 HOH B 107 907 246 HOH HOH . J 6 HOH B 108 908 247 HOH HOH . J 6 HOH B 109 909 249 HOH HOH . K 6 HOH F 1 701 179 HOH HOH . K 6 HOH F 2 702 180 HOH HOH . L 6 HOH G 1 701 53 HOH HOH . L 6 HOH G 2 702 178 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 5 13.631 3.079 21.516 1 41.98 ? C1 GOL 602 A 1 HETATM 2 O O1 GOL . . . F 5 12.869 3.084 20.327 1 60.49 ? O1 GOL 602 A 1 HETATM 3 C C2 GOL . . . F 5 13.5 1.712 22.18 1 41.25 ? C2 GOL 602 A 1 HETATM 4 O O2 GOL . . . F 5 13.136 0.74 21.225 1 42.46 ? O2 GOL 602 A 1 HETATM 5 C C3 GOL . . . F 5 14.823 1.344 22.84 1 40.91 ? C3 GOL 602 A 1 HETATM 6 O O3 GOL . . . F 5 15.88 1.926 22.104 1 64.89 ? O3 GOL 602 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 6 #