data_4MGB # _model_server_result.job_id taWhlhLGaGGA1tZHeu6vIw _model_server_result.datetime_utc '2024-11-25 12:28:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4mgb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":603}' # _entry.id 4MGB # _exptl.entry_id 4MGB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.32 _cell.angle_gamma 90 _cell.entry_id 4MGB _cell.length_a 54.67 _cell.length_b 81.55 _cell.length_c 58.72 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4MGB _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 83 A GLU 380 1_555 A N CSO 84 A CSO 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 A C CSO 84 A CSO 381 1_555 A N ALA 85 A ALA 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 B C GLU 83 B GLU 380 1_555 B N CSO 84 B CSO 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 B C CSO 84 B CSO 381 1_555 B N ALA 85 B ALA 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 B C LYS 232 B LYS 529 1_555 B N CSO 233 B CSO 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale6 B C CSO 233 B CSO 530 1_555 B N LYS 234 B LYS 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 143 n n C1 C2 GOL sing 144 n n C1 H11 GOL sing 145 n n C1 H12 GOL sing 146 n n O1 HO1 GOL sing 147 n n C2 O2 GOL sing 148 n n C2 C3 GOL sing 149 n n C2 H2 GOL sing 150 n n O2 HO2 GOL sing 151 n n C3 O3 GOL sing 152 n n C3 H31 GOL sing 153 n n C3 H32 GOL sing 154 n n O3 HO3 GOL sing 155 n n # _atom_sites.entry_id 4MGB _atom_sites.fract_transf_matrix[1][1] 0.018292 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006774 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012262 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01816 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 XDH A 1 601 1 XDH DRG . F 4 XDH B 1 601 1 XDH DRG . G 5 GOL B 1 602 1 GOL GOL . H 5 GOL B 1 603 2 GOL GOL . I 6 HOH A 1 701 1 HOH HOH . I 6 HOH A 2 702 3 HOH HOH . I 6 HOH A 3 703 4 HOH HOH . I 6 HOH A 4 704 5 HOH HOH . I 6 HOH A 5 705 10 HOH HOH . I 6 HOH A 6 706 11 HOH HOH . I 6 HOH A 7 707 12 HOH HOH . I 6 HOH A 8 708 15 HOH HOH . I 6 HOH A 9 709 16 HOH HOH . I 6 HOH A 10 710 18 HOH HOH . I 6 HOH A 11 711 21 HOH HOH . I 6 HOH A 12 712 24 HOH HOH . I 6 HOH A 13 713 28 HOH HOH . I 6 HOH A 14 714 29 HOH HOH . I 6 HOH A 15 715 30 HOH HOH . I 6 HOH A 16 716 31 HOH HOH . I 6 HOH A 17 717 32 HOH HOH . I 6 HOH A 18 718 35 HOH HOH . I 6 HOH A 19 719 37 HOH HOH . I 6 HOH A 20 720 38 HOH HOH . I 6 HOH A 21 721 39 HOH HOH . I 6 HOH A 22 722 42 HOH HOH . I 6 HOH A 23 723 43 HOH HOH . I 6 HOH A 24 724 51 HOH HOH . I 6 HOH A 25 725 52 HOH HOH . I 6 HOH A 26 726 53 HOH HOH . I 6 HOH A 27 727 54 HOH HOH . I 6 HOH A 28 728 55 HOH HOH . I 6 HOH A 29 729 57 HOH HOH . I 6 HOH A 30 730 60 HOH HOH . I 6 HOH A 31 731 65 HOH HOH . I 6 HOH A 32 732 69 HOH HOH . I 6 HOH A 33 733 71 HOH HOH . I 6 HOH A 34 734 72 HOH HOH . I 6 HOH A 35 735 73 HOH HOH . I 6 HOH A 36 736 81 HOH HOH . I 6 HOH A 37 737 82 HOH HOH . I 6 HOH A 38 738 84 HOH HOH . I 6 HOH A 39 739 93 HOH HOH . I 6 HOH A 40 740 95 HOH HOH . I 6 HOH A 41 741 96 HOH HOH . I 6 HOH A 42 742 97 HOH HOH . I 6 HOH A 43 743 98 HOH HOH . I 6 HOH A 44 744 106 HOH HOH . I 6 HOH A 45 745 107 HOH HOH . I 6 HOH A 46 746 109 HOH HOH . I 6 HOH A 47 747 114 HOH HOH . I 6 HOH A 48 748 115 HOH HOH . I 6 HOH A 49 749 117 HOH HOH . I 6 HOH A 50 750 119 HOH HOH . I 6 HOH A 51 751 120 HOH HOH . I 6 HOH A 52 752 121 HOH HOH . I 6 HOH A 53 753 122 HOH HOH . I 6 HOH A 54 754 124 HOH HOH . I 6 HOH A 55 755 127 HOH HOH . I 6 HOH A 56 756 133 HOH HOH . I 6 HOH A 57 757 141 HOH HOH . I 6 HOH A 58 758 153 HOH HOH . I 6 HOH A 59 759 155 HOH HOH . I 6 HOH A 60 760 158 HOH HOH . I 6 HOH A 61 761 159 HOH HOH . I 6 HOH A 62 762 164 HOH HOH . I 6 HOH A 63 763 172 HOH HOH . I 6 HOH A 64 764 186 HOH HOH . I 6 HOH A 65 765 188 HOH HOH . I 6 HOH A 66 766 193 HOH HOH . I 6 HOH A 67 767 198 HOH HOH . I 6 HOH A 68 768 201 HOH HOH . I 6 HOH A 69 769 205 HOH HOH . I 6 HOH A 70 770 211 HOH HOH . I 6 HOH A 71 771 212 HOH HOH . I 6 HOH A 72 772 213 HOH HOH . I 6 HOH A 73 773 214 HOH HOH . I 6 HOH A 74 774 217 HOH HOH . I 6 HOH A 75 775 218 HOH HOH . I 6 HOH A 76 776 219 HOH HOH . I 6 HOH A 77 777 220 HOH HOH . I 6 HOH A 78 778 236 HOH HOH . I 6 HOH A 79 779 243 HOH HOH . I 6 HOH A 80 780 244 HOH HOH . I 6 HOH A 81 781 245 HOH HOH . I 6 HOH A 82 782 247 HOH HOH . I 6 HOH A 83 783 251 HOH HOH . I 6 HOH A 84 784 255 HOH HOH . I 6 HOH A 85 785 256 HOH HOH . I 6 HOH A 86 786 257 HOH HOH . J 6 HOH B 1 701 2 HOH HOH . J 6 HOH B 2 702 6 HOH HOH . J 6 HOH B 3 703 7 HOH HOH . J 6 HOH B 4 704 8 HOH HOH . J 6 HOH B 5 705 9 HOH HOH . J 6 HOH B 6 706 13 HOH HOH . J 6 HOH B 7 707 14 HOH HOH . J 6 HOH B 8 708 17 HOH HOH . J 6 HOH B 9 709 19 HOH HOH . J 6 HOH B 10 710 22 HOH HOH . J 6 HOH B 11 711 25 HOH HOH . J 6 HOH B 12 712 26 HOH HOH . J 6 HOH B 13 713 27 HOH HOH . J 6 HOH B 14 714 33 HOH HOH . J 6 HOH B 15 715 34 HOH HOH . J 6 HOH B 16 716 36 HOH HOH . J 6 HOH B 17 717 40 HOH HOH . J 6 HOH B 18 718 41 HOH HOH . J 6 HOH B 19 719 44 HOH HOH . J 6 HOH B 20 720 46 HOH HOH . J 6 HOH B 21 721 47 HOH HOH . J 6 HOH B 22 722 48 HOH HOH . J 6 HOH B 23 723 50 HOH HOH . J 6 HOH B 24 724 58 HOH HOH . J 6 HOH B 25 725 62 HOH HOH . J 6 HOH B 26 726 63 HOH HOH . J 6 HOH B 27 727 64 HOH HOH . J 6 HOH B 28 728 66 HOH HOH . J 6 HOH B 29 729 67 HOH HOH . J 6 HOH B 30 730 70 HOH HOH . J 6 HOH B 31 731 76 HOH HOH . J 6 HOH B 32 732 85 HOH HOH . J 6 HOH B 33 733 86 HOH HOH . J 6 HOH B 34 734 87 HOH HOH . J 6 HOH B 35 735 88 HOH HOH . J 6 HOH B 36 736 89 HOH HOH . J 6 HOH B 37 737 90 HOH HOH . J 6 HOH B 38 738 91 HOH HOH . J 6 HOH B 39 739 92 HOH HOH . J 6 HOH B 40 740 99 HOH HOH . J 6 HOH B 41 741 100 HOH HOH . J 6 HOH B 42 742 101 HOH HOH . J 6 HOH B 43 743 102 HOH HOH . J 6 HOH B 44 744 103 HOH HOH . J 6 HOH B 45 745 105 HOH HOH . J 6 HOH B 46 746 110 HOH HOH . J 6 HOH B 47 747 113 HOH HOH . J 6 HOH B 48 748 116 HOH HOH . J 6 HOH B 49 749 118 HOH HOH . J 6 HOH B 50 750 125 HOH HOH . J 6 HOH B 51 751 126 HOH HOH . J 6 HOH B 52 752 130 HOH HOH . J 6 HOH B 53 753 132 HOH HOH . J 6 HOH B 54 754 136 HOH HOH . J 6 HOH B 55 755 144 HOH HOH . J 6 HOH B 56 756 148 HOH HOH . J 6 HOH B 57 757 149 HOH HOH . J 6 HOH B 58 758 154 HOH HOH . J 6 HOH B 59 759 157 HOH HOH . J 6 HOH B 60 760 177 HOH HOH . J 6 HOH B 61 761 209 HOH HOH . J 6 HOH B 62 762 210 HOH HOH . J 6 HOH B 63 763 215 HOH HOH . J 6 HOH B 64 764 216 HOH HOH . J 6 HOH B 65 765 221 HOH HOH . J 6 HOH B 66 766 222 HOH HOH . J 6 HOH B 67 767 223 HOH HOH . J 6 HOH B 68 768 224 HOH HOH . J 6 HOH B 69 769 225 HOH HOH . J 6 HOH B 70 770 226 HOH HOH . J 6 HOH B 71 771 227 HOH HOH . J 6 HOH B 72 772 228 HOH HOH . J 6 HOH B 73 773 229 HOH HOH . J 6 HOH B 74 774 230 HOH HOH . J 6 HOH B 75 775 232 HOH HOH . J 6 HOH B 76 776 233 HOH HOH . J 6 HOH B 77 777 234 HOH HOH . J 6 HOH B 78 778 235 HOH HOH . J 6 HOH B 79 779 237 HOH HOH . J 6 HOH B 80 780 238 HOH HOH . J 6 HOH B 81 781 239 HOH HOH . J 6 HOH B 82 782 240 HOH HOH . J 6 HOH B 83 783 242 HOH HOH . J 6 HOH B 84 784 246 HOH HOH . J 6 HOH B 85 785 248 HOH HOH . J 6 HOH B 86 786 250 HOH HOH . J 6 HOH B 87 787 252 HOH HOH . J 6 HOH B 88 788 253 HOH HOH . J 6 HOH B 89 789 254 HOH HOH . K 6 HOH C 1 701 165 HOH HOH . K 6 HOH C 2 702 207 HOH HOH . K 6 HOH C 3 703 241 HOH HOH . L 6 HOH D 1 701 208 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 5 14.796 -5.532 55.919 1 47.01 ? C1 GOL 603 B 1 HETATM 2 O O1 GOL . . . H 5 13.879 -4.602 56.457 1 49.37 ? O1 GOL 603 B 1 HETATM 3 C C2 GOL . . . H 5 14.494 -6.919 56.479 1 45.96 ? C2 GOL 603 B 1 HETATM 4 O O2 GOL . . . H 5 14.668 -6.906 57.877 1 51.96 ? O2 GOL 603 B 1 HETATM 5 C C3 GOL . . . H 5 15.436 -7.946 55.861 1 47.45 ? C3 GOL 603 B 1 HETATM 6 O O3 GOL . . . H 5 15.19 -9.199 56.457 1 56.54 ? O3 GOL 603 B 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #