data_4MGC
#
_model_server_result.job_id            ZYfIByQboo4SnSj0a8HcSg 
_model_server_result.datetime_utc      '2024-10-14 10:16:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4mgc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":602}' 
#
_entry.id    4MGC 
#
_exptl.entry_id    4MGC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          109 
_cell.angle_gamma         90 
_cell.entry_id            4MGC 
_cell.length_a            56.02 
_cell.length_b            83.87 
_cell.length_c            58.4 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4MGC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 G N N 
? 4 I N N 
? 4 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLU 83 A GLU 380 1_555 A N CSO 84 A CSO 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale2 A C CSO 84 A CSO 381 1_555 A N ALA 85 A ALA 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale3 A C LYS 119 A LYS 416 1_555 A N CSO 120 A CSO 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale4 A C CSO 120 A CSO 417 1_555 A N VAL 121 A VAL 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale5 A C LYS 232 A LYS 529 1_555 A N CSO 233 A CSO 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale6 A C CSO 233 A CSO 530 1_555 A N LYS 234 A LYS 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale7 B C GLU 83 B GLU 380 1_555 B N CSO 84 B CSO 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale8 B C CSO 84 B CSO 381 1_555 B N ALA 85 B ALA 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale9 B C LYS 119 B LYS 416 1_555 B N CSO 120 B CSO 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale10 B C CSO 120 B CSO 417 1_555 B N VAL 121 B VAL 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale11 B C LYS 232 B LYS 529 1_555 B N CSO 233 B CSO 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale12 B C CSO 233 B CSO 530 1_555 B N LYS 234 B LYS 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 172 n n 
C1 C2 GOL sing 173 n n 
C1 H11 GOL sing 174 n n 
C1 H12 GOL sing 175 n n 
O1 HO1 GOL sing 176 n n 
C2 O2 GOL sing 177 n n 
C2 C3 GOL sing 178 n n 
C2 H2 GOL sing 179 n n 
O2 HO2 GOL sing 180 n n 
C3 O3 GOL sing 181 n n 
C3 H31 GOL sing 182 n n 
C3 H32 GOL sing 183 n n 
O3 HO3 GOL sing 184 n n 
#
_atom_sites.entry_id                     4MGC 
_atom_sites.fract_transf_matrix[1][1]    0.017851 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006147 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011923 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01811 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 27M A 1 601 1 27M 27M . 
F 4 GOL A 1 602 1 GOL GOL . 
G 4 GOL A 1 603 2 GOL GOL . 
H 3 27M B 1 601 1 27M 27M . 
I 4 GOL B 1 602 3 GOL GOL . 
J 4 GOL B 1 603 4 GOL GOL . 
K 5 HOH A 1 701 6 HOH HOH . 
K 5 HOH A 2 702 7 HOH HOH . 
K 5 HOH A 3 703 8 HOH HOH . 
K 5 HOH A 4 704 14 HOH HOH . 
K 5 HOH A 5 705 16 HOH HOH . 
K 5 HOH A 6 706 17 HOH HOH . 
K 5 HOH A 7 707 18 HOH HOH . 
K 5 HOH A 8 708 20 HOH HOH . 
K 5 HOH A 9 709 21 HOH HOH . 
K 5 HOH A 10 710 22 HOH HOH . 
K 5 HOH A 11 711 23 HOH HOH . 
K 5 HOH A 12 712 24 HOH HOH . 
K 5 HOH A 13 713 28 HOH HOH . 
K 5 HOH A 14 714 30 HOH HOH . 
K 5 HOH A 15 715 31 HOH HOH . 
K 5 HOH A 16 716 32 HOH HOH . 
K 5 HOH A 17 717 34 HOH HOH . 
K 5 HOH A 18 718 36 HOH HOH . 
K 5 HOH A 19 719 42 HOH HOH . 
K 5 HOH A 20 720 43 HOH HOH . 
K 5 HOH A 21 721 44 HOH HOH . 
K 5 HOH A 22 722 46 HOH HOH . 
K 5 HOH A 23 723 51 HOH HOH . 
K 5 HOH A 24 724 53 HOH HOH . 
K 5 HOH A 25 725 54 HOH HOH . 
K 5 HOH A 26 726 59 HOH HOH . 
K 5 HOH A 27 727 61 HOH HOH . 
K 5 HOH A 28 728 62 HOH HOH . 
K 5 HOH A 29 729 63 HOH HOH . 
K 5 HOH A 30 730 64 HOH HOH . 
K 5 HOH A 31 731 65 HOH HOH . 
K 5 HOH A 32 732 66 HOH HOH . 
K 5 HOH A 33 733 67 HOH HOH . 
K 5 HOH A 34 734 68 HOH HOH . 
K 5 HOH A 35 735 70 HOH HOH . 
K 5 HOH A 36 736 71 HOH HOH . 
K 5 HOH A 37 737 72 HOH HOH . 
K 5 HOH A 38 738 73 HOH HOH . 
K 5 HOH A 39 739 74 HOH HOH . 
K 5 HOH A 40 740 75 HOH HOH . 
K 5 HOH A 41 741 76 HOH HOH . 
K 5 HOH A 42 742 77 HOH HOH . 
K 5 HOH A 43 743 78 HOH HOH . 
K 5 HOH A 44 744 79 HOH HOH . 
K 5 HOH A 45 745 80 HOH HOH . 
K 5 HOH A 46 746 82 HOH HOH . 
K 5 HOH A 47 747 121 HOH HOH . 
K 5 HOH A 48 748 122 HOH HOH . 
K 5 HOH A 49 749 123 HOH HOH . 
K 5 HOH A 50 750 128 HOH HOH . 
K 5 HOH A 51 751 133 HOH HOH . 
K 5 HOH A 52 752 137 HOH HOH . 
K 5 HOH A 53 753 138 HOH HOH . 
K 5 HOH A 54 754 139 HOH HOH . 
K 5 HOH A 55 755 140 HOH HOH . 
K 5 HOH A 56 756 141 HOH HOH . 
K 5 HOH A 57 757 142 HOH HOH . 
K 5 HOH A 58 758 143 HOH HOH . 
K 5 HOH A 59 759 144 HOH HOH . 
K 5 HOH A 60 760 145 HOH HOH . 
K 5 HOH A 61 761 146 HOH HOH . 
K 5 HOH A 62 762 147 HOH HOH . 
K 5 HOH A 63 763 148 HOH HOH . 
K 5 HOH A 64 764 149 HOH HOH . 
K 5 HOH A 65 765 152 HOH HOH . 
K 5 HOH A 66 766 153 HOH HOH . 
K 5 HOH A 67 767 154 HOH HOH . 
K 5 HOH A 68 768 155 HOH HOH . 
K 5 HOH A 69 769 157 HOH HOH . 
K 5 HOH A 70 770 158 HOH HOH . 
K 5 HOH A 71 771 159 HOH HOH . 
K 5 HOH A 72 772 181 HOH HOH . 
K 5 HOH A 73 773 182 HOH HOH . 
K 5 HOH A 74 774 183 HOH HOH . 
K 5 HOH A 75 775 184 HOH HOH . 
K 5 HOH A 76 776 185 HOH HOH . 
K 5 HOH A 77 777 188 HOH HOH . 
K 5 HOH A 78 778 193 HOH HOH . 
K 5 HOH A 79 779 194 HOH HOH . 
K 5 HOH A 80 780 195 HOH HOH . 
K 5 HOH A 81 781 196 HOH HOH . 
K 5 HOH A 82 782 198 HOH HOH . 
K 5 HOH A 83 783 199 HOH HOH . 
K 5 HOH A 84 784 201 HOH HOH . 
K 5 HOH A 85 785 212 HOH HOH . 
K 5 HOH A 86 786 217 HOH HOH . 
K 5 HOH A 87 787 220 HOH HOH . 
K 5 HOH A 88 788 190 HOH HOH . 
L 5 HOH B 1 701 1 HOH HOH . 
L 5 HOH B 2 702 4 HOH HOH . 
L 5 HOH B 3 703 11 HOH HOH . 
L 5 HOH B 4 704 12 HOH HOH . 
L 5 HOH B 5 705 15 HOH HOH . 
L 5 HOH B 6 706 19 HOH HOH . 
L 5 HOH B 7 707 25 HOH HOH . 
L 5 HOH B 8 708 26 HOH HOH . 
L 5 HOH B 9 709 27 HOH HOH . 
L 5 HOH B 10 710 29 HOH HOH . 
L 5 HOH B 11 711 33 HOH HOH . 
L 5 HOH B 12 712 37 HOH HOH . 
L 5 HOH B 13 713 38 HOH HOH . 
L 5 HOH B 14 714 39 HOH HOH . 
L 5 HOH B 15 715 40 HOH HOH . 
L 5 HOH B 16 716 41 HOH HOH . 
L 5 HOH B 17 717 48 HOH HOH . 
L 5 HOH B 18 718 49 HOH HOH . 
L 5 HOH B 19 719 50 HOH HOH . 
L 5 HOH B 20 720 52 HOH HOH . 
L 5 HOH B 21 721 55 HOH HOH . 
L 5 HOH B 22 722 56 HOH HOH . 
L 5 HOH B 23 723 57 HOH HOH . 
L 5 HOH B 24 724 81 HOH HOH . 
L 5 HOH B 25 725 83 HOH HOH . 
L 5 HOH B 26 726 84 HOH HOH . 
L 5 HOH B 27 727 85 HOH HOH . 
L 5 HOH B 28 728 86 HOH HOH . 
L 5 HOH B 29 729 87 HOH HOH . 
L 5 HOH B 30 730 88 HOH HOH . 
L 5 HOH B 31 731 89 HOH HOH . 
L 5 HOH B 32 732 90 HOH HOH . 
L 5 HOH B 33 733 91 HOH HOH . 
L 5 HOH B 34 734 92 HOH HOH . 
L 5 HOH B 35 735 93 HOH HOH . 
L 5 HOH B 36 736 95 HOH HOH . 
L 5 HOH B 37 737 96 HOH HOH . 
L 5 HOH B 38 738 97 HOH HOH . 
L 5 HOH B 39 739 98 HOH HOH . 
L 5 HOH B 40 740 99 HOH HOH . 
L 5 HOH B 41 741 100 HOH HOH . 
L 5 HOH B 42 742 103 HOH HOH . 
L 5 HOH B 43 743 104 HOH HOH . 
L 5 HOH B 44 744 105 HOH HOH . 
L 5 HOH B 45 745 106 HOH HOH . 
L 5 HOH B 46 746 107 HOH HOH . 
L 5 HOH B 47 747 108 HOH HOH . 
L 5 HOH B 48 748 109 HOH HOH . 
L 5 HOH B 49 749 110 HOH HOH . 
L 5 HOH B 50 750 112 HOH HOH . 
L 5 HOH B 51 751 113 HOH HOH . 
L 5 HOH B 52 752 114 HOH HOH . 
L 5 HOH B 53 753 116 HOH HOH . 
L 5 HOH B 54 754 117 HOH HOH . 
L 5 HOH B 55 755 119 HOH HOH . 
L 5 HOH B 56 756 120 HOH HOH . 
L 5 HOH B 57 757 124 HOH HOH . 
L 5 HOH B 58 758 125 HOH HOH . 
L 5 HOH B 59 759 126 HOH HOH . 
L 5 HOH B 60 760 127 HOH HOH . 
L 5 HOH B 61 761 129 HOH HOH . 
L 5 HOH B 62 762 130 HOH HOH . 
L 5 HOH B 63 763 131 HOH HOH . 
L 5 HOH B 64 764 132 HOH HOH . 
L 5 HOH B 65 765 134 HOH HOH . 
L 5 HOH B 66 766 135 HOH HOH . 
L 5 HOH B 67 767 150 HOH HOH . 
L 5 HOH B 68 768 151 HOH HOH . 
L 5 HOH B 69 769 156 HOH HOH . 
L 5 HOH B 70 770 160 HOH HOH . 
L 5 HOH B 71 771 161 HOH HOH . 
L 5 HOH B 72 772 162 HOH HOH . 
L 5 HOH B 73 773 163 HOH HOH . 
L 5 HOH B 74 774 164 HOH HOH . 
L 5 HOH B 75 775 165 HOH HOH . 
L 5 HOH B 76 776 167 HOH HOH . 
L 5 HOH B 77 777 168 HOH HOH . 
L 5 HOH B 78 778 169 HOH HOH . 
L 5 HOH B 79 779 170 HOH HOH . 
L 5 HOH B 80 780 171 HOH HOH . 
L 5 HOH B 81 781 172 HOH HOH . 
L 5 HOH B 82 782 174 HOH HOH . 
L 5 HOH B 83 783 175 HOH HOH . 
L 5 HOH B 84 784 176 HOH HOH . 
L 5 HOH B 85 785 178 HOH HOH . 
L 5 HOH B 86 786 179 HOH HOH . 
L 5 HOH B 87 787 180 HOH HOH . 
L 5 HOH B 88 788 186 HOH HOH . 
L 5 HOH B 89 789 187 HOH HOH . 
L 5 HOH B 90 790 189 HOH HOH . 
L 5 HOH B 91 791 191 HOH HOH . 
L 5 HOH B 92 792 197 HOH HOH . 
L 5 HOH B 93 793 200 HOH HOH . 
L 5 HOH B 94 794 202 HOH HOH . 
L 5 HOH B 95 795 203 HOH HOH . 
L 5 HOH B 96 796 204 HOH HOH . 
L 5 HOH B 97 797 205 HOH HOH . 
L 5 HOH B 98 798 206 HOH HOH . 
L 5 HOH B 99 799 207 HOH HOH . 
L 5 HOH B 100 800 208 HOH HOH . 
L 5 HOH B 101 801 209 HOH HOH . 
L 5 HOH B 102 802 210 HOH HOH . 
L 5 HOH B 103 803 211 HOH HOH . 
L 5 HOH B 104 804 213 HOH HOH . 
L 5 HOH B 105 805 214 HOH HOH . 
L 5 HOH B 106 806 215 HOH HOH . 
L 5 HOH B 107 807 216 HOH HOH . 
L 5 HOH B 108 808 218 HOH HOH . 
L 5 HOH B 109 809 219 HOH HOH . 
L 5 HOH B 110 810 221 HOH HOH . 
M 5 HOH F 1 701 222 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . I 4 -15.771 -25.086 58.463 1 29.9 ? C1 GOL 602 B 1 
HETATM 2 O O1 GOL . . . I 4 -15.46 -25.192 59.839 1 41.58 ? O1 GOL 602 B 1 
HETATM 3 C C2 GOL . . . I 4 -17.164 -25.635 58.186 1 36.11 ? C2 GOL 602 B 1 
HETATM 4 O O2 GOL . . . I 4 -17.87 -24.714 57.386 1 37.9 ? O2 GOL 602 B 1 
HETATM 5 C C3 GOL . . . I 4 -17.057 -26.95 57.423 1 45.31 ? C3 GOL 602 B 1 
HETATM 6 O O3 GOL . . . I 4 -17.105 -26.68 56.039 1 37.92 ? O3 GOL 602 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#