data_4MGD # _model_server_result.job_id u-A-jOd0DFtLNz4LufX74Q _model_server_result.datetime_utc '2024-11-24 02:59:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4mgd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":603}' # _entry.id 4MGD # _exptl.entry_id 4MGD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.54 _cell.angle_gamma 90 _cell.entry_id 4MGD _cell.length_a 54.9 _cell.length_b 81.88 _cell.length_c 58.59 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4MGD _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 83 A GLU 380 1_555 A N CSO 84 A CSO 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 A C CSO 84 A CSO 381 1_555 A N ALA 85 A ALA 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 B C GLU 83 B GLU 380 1_555 B N CSO 84 B CSO 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 B C CSO 84 B CSO 381 1_555 B N ALA 85 B ALA 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale5 B C LYS 232 B LYS 529 1_555 B N CSO 233 B CSO 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 B C CSO 233 B CSO 530 1_555 B N LYS 234 B LYS 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 128 n n C1 C2 EDO sing 129 n n C1 H11 EDO sing 130 n n C1 H12 EDO sing 131 n n O1 HO1 EDO sing 132 n n C2 O2 EDO sing 133 n n C2 H21 EDO sing 134 n n C2 H22 EDO sing 135 n n O2 HO2 EDO sing 136 n n # _atom_sites.entry_id 4MGD _atom_sites.fract_transf_matrix[1][1] 0.018215 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006823 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012213 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018226 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 27N A 1 601 1 27N DRG . F 4 27N B 1 601 1 27N DRG . G 5 GOL B 1 602 1 GOL GOL . H 6 EDO B 1 603 554 EDO EDO . I 7 HOH A 1 701 1 HOH HOH . I 7 HOH A 2 702 2 HOH HOH . I 7 HOH A 3 703 3 HOH HOH . I 7 HOH A 4 704 4 HOH HOH . I 7 HOH A 5 705 7 HOH HOH . I 7 HOH A 6 706 9 HOH HOH . I 7 HOH A 7 707 11 HOH HOH . I 7 HOH A 8 708 14 HOH HOH . I 7 HOH A 9 709 16 HOH HOH . I 7 HOH A 10 710 21 HOH HOH . I 7 HOH A 11 711 22 HOH HOH . I 7 HOH A 12 712 25 HOH HOH . I 7 HOH A 13 713 26 HOH HOH . I 7 HOH A 14 714 28 HOH HOH . I 7 HOH A 15 715 29 HOH HOH . I 7 HOH A 16 716 32 HOH HOH . I 7 HOH A 17 717 33 HOH HOH . I 7 HOH A 18 718 34 HOH HOH . I 7 HOH A 19 719 36 HOH HOH . I 7 HOH A 20 720 37 HOH HOH . I 7 HOH A 21 721 38 HOH HOH . I 7 HOH A 22 722 40 HOH HOH . I 7 HOH A 23 723 41 HOH HOH . I 7 HOH A 24 724 43 HOH HOH . I 7 HOH A 25 725 45 HOH HOH . I 7 HOH A 26 726 46 HOH HOH . I 7 HOH A 27 727 48 HOH HOH . I 7 HOH A 28 728 49 HOH HOH . I 7 HOH A 29 729 50 HOH HOH . I 7 HOH A 30 730 57 HOH HOH . I 7 HOH A 31 731 58 HOH HOH . I 7 HOH A 32 732 62 HOH HOH . I 7 HOH A 33 733 64 HOH HOH . I 7 HOH A 34 734 65 HOH HOH . I 7 HOH A 35 735 67 HOH HOH . I 7 HOH A 36 736 69 HOH HOH . I 7 HOH A 37 737 70 HOH HOH . I 7 HOH A 38 738 71 HOH HOH . I 7 HOH A 39 739 73 HOH HOH . I 7 HOH A 40 740 76 HOH HOH . I 7 HOH A 41 741 78 HOH HOH . I 7 HOH A 42 742 79 HOH HOH . I 7 HOH A 43 743 80 HOH HOH . I 7 HOH A 44 744 82 HOH HOH . I 7 HOH A 45 745 83 HOH HOH . I 7 HOH A 46 746 84 HOH HOH . I 7 HOH A 47 747 87 HOH HOH . I 7 HOH A 48 748 89 HOH HOH . I 7 HOH A 49 749 93 HOH HOH . I 7 HOH A 50 750 96 HOH HOH . I 7 HOH A 51 751 97 HOH HOH . I 7 HOH A 52 752 98 HOH HOH . I 7 HOH A 53 753 99 HOH HOH . I 7 HOH A 54 754 100 HOH HOH . I 7 HOH A 55 755 105 HOH HOH . I 7 HOH A 56 756 106 HOH HOH . I 7 HOH A 57 757 109 HOH HOH . I 7 HOH A 58 758 110 HOH HOH . I 7 HOH A 59 759 112 HOH HOH . I 7 HOH A 60 760 114 HOH HOH . I 7 HOH A 61 761 127 HOH HOH . I 7 HOH A 62 762 128 HOH HOH . I 7 HOH A 63 763 129 HOH HOH . I 7 HOH A 64 764 130 HOH HOH . I 7 HOH A 65 765 131 HOH HOH . I 7 HOH A 66 766 132 HOH HOH . I 7 HOH A 67 767 144 HOH HOH . I 7 HOH A 68 768 147 HOH HOH . I 7 HOH A 69 769 149 HOH HOH . I 7 HOH A 70 770 150 HOH HOH . I 7 HOH A 71 771 151 HOH HOH . I 7 HOH A 72 772 153 HOH HOH . I 7 HOH A 73 773 156 HOH HOH . I 7 HOH A 74 774 161 HOH HOH . I 7 HOH A 75 775 168 HOH HOH . I 7 HOH A 76 776 171 HOH HOH . I 7 HOH A 77 777 173 HOH HOH . I 7 HOH A 78 778 178 HOH HOH . I 7 HOH A 79 779 180 HOH HOH . I 7 HOH A 80 780 185 HOH HOH . I 7 HOH A 81 781 193 HOH HOH . I 7 HOH A 82 782 194 HOH HOH . I 7 HOH A 83 783 211 HOH HOH . I 7 HOH A 84 784 212 HOH HOH . I 7 HOH A 85 785 213 HOH HOH . I 7 HOH A 86 786 214 HOH HOH . I 7 HOH A 87 787 215 HOH HOH . I 7 HOH A 88 788 217 HOH HOH . I 7 HOH A 89 789 218 HOH HOH . I 7 HOH A 90 790 219 HOH HOH . I 7 HOH A 91 791 220 HOH HOH . I 7 HOH A 92 792 222 HOH HOH . I 7 HOH A 93 793 232 HOH HOH . I 7 HOH A 94 794 233 HOH HOH . I 7 HOH A 95 795 234 HOH HOH . I 7 HOH A 96 796 235 HOH HOH . I 7 HOH A 97 797 236 HOH HOH . I 7 HOH A 98 798 237 HOH HOH . I 7 HOH A 99 799 238 HOH HOH . I 7 HOH A 100 800 239 HOH HOH . I 7 HOH A 101 801 240 HOH HOH . I 7 HOH A 102 802 241 HOH HOH . I 7 HOH A 103 803 242 HOH HOH . I 7 HOH A 104 804 254 HOH HOH . I 7 HOH A 105 805 255 HOH HOH . I 7 HOH A 106 806 256 HOH HOH . I 7 HOH A 107 807 258 HOH HOH . I 7 HOH A 108 808 268 HOH HOH . I 7 HOH A 109 809 271 HOH HOH . I 7 HOH A 110 810 272 HOH HOH . I 7 HOH A 111 811 273 HOH HOH . I 7 HOH A 112 812 276 HOH HOH . J 7 HOH B 1 701 5 HOH HOH . J 7 HOH B 2 702 6 HOH HOH . J 7 HOH B 3 703 8 HOH HOH . J 7 HOH B 4 704 10 HOH HOH . J 7 HOH B 5 705 12 HOH HOH . J 7 HOH B 6 706 13 HOH HOH . J 7 HOH B 7 707 15 HOH HOH . J 7 HOH B 8 708 17 HOH HOH . J 7 HOH B 9 709 18 HOH HOH . J 7 HOH B 10 710 19 HOH HOH . J 7 HOH B 11 711 20 HOH HOH . J 7 HOH B 12 712 23 HOH HOH . J 7 HOH B 13 713 30 HOH HOH . J 7 HOH B 14 714 35 HOH HOH . J 7 HOH B 15 715 39 HOH HOH . J 7 HOH B 16 716 42 HOH HOH . J 7 HOH B 17 717 47 HOH HOH . J 7 HOH B 18 718 51 HOH HOH . J 7 HOH B 19 719 53 HOH HOH . J 7 HOH B 20 720 54 HOH HOH . J 7 HOH B 21 721 55 HOH HOH . J 7 HOH B 22 722 56 HOH HOH . J 7 HOH B 23 723 59 HOH HOH . J 7 HOH B 24 724 63 HOH HOH . J 7 HOH B 25 725 66 HOH HOH . J 7 HOH B 26 726 68 HOH HOH . J 7 HOH B 27 727 77 HOH HOH . J 7 HOH B 28 728 81 HOH HOH . J 7 HOH B 29 729 85 HOH HOH . J 7 HOH B 30 730 88 HOH HOH . J 7 HOH B 31 731 90 HOH HOH . J 7 HOH B 32 732 91 HOH HOH . J 7 HOH B 33 733 94 HOH HOH . J 7 HOH B 34 734 102 HOH HOH . J 7 HOH B 35 735 107 HOH HOH . J 7 HOH B 36 736 111 HOH HOH . J 7 HOH B 37 737 113 HOH HOH . J 7 HOH B 38 738 115 HOH HOH . J 7 HOH B 39 739 116 HOH HOH . J 7 HOH B 40 740 117 HOH HOH . J 7 HOH B 41 741 118 HOH HOH . J 7 HOH B 42 742 119 HOH HOH . J 7 HOH B 43 743 120 HOH HOH . J 7 HOH B 44 744 121 HOH HOH . J 7 HOH B 45 745 122 HOH HOH . J 7 HOH B 46 746 123 HOH HOH . J 7 HOH B 47 747 124 HOH HOH . J 7 HOH B 48 748 125 HOH HOH . J 7 HOH B 49 749 134 HOH HOH . J 7 HOH B 50 750 136 HOH HOH . J 7 HOH B 51 751 137 HOH HOH . J 7 HOH B 52 752 138 HOH HOH . J 7 HOH B 53 753 139 HOH HOH . J 7 HOH B 54 754 140 HOH HOH . J 7 HOH B 55 755 141 HOH HOH . J 7 HOH B 56 756 142 HOH HOH . J 7 HOH B 57 757 143 HOH HOH . J 7 HOH B 58 758 155 HOH HOH . J 7 HOH B 59 759 157 HOH HOH . J 7 HOH B 60 760 159 HOH HOH . J 7 HOH B 61 761 162 HOH HOH . J 7 HOH B 62 762 163 HOH HOH . J 7 HOH B 63 763 165 HOH HOH . J 7 HOH B 64 764 169 HOH HOH . J 7 HOH B 65 765 172 HOH HOH . J 7 HOH B 66 766 181 HOH HOH . J 7 HOH B 67 767 182 HOH HOH . J 7 HOH B 68 768 186 HOH HOH . J 7 HOH B 69 769 191 HOH HOH . J 7 HOH B 70 770 206 HOH HOH . J 7 HOH B 71 771 207 HOH HOH . J 7 HOH B 72 772 208 HOH HOH . J 7 HOH B 73 773 209 HOH HOH . J 7 HOH B 74 774 210 HOH HOH . J 7 HOH B 75 775 216 HOH HOH . J 7 HOH B 76 776 223 HOH HOH . J 7 HOH B 77 777 225 HOH HOH . J 7 HOH B 78 778 226 HOH HOH . J 7 HOH B 79 779 227 HOH HOH . J 7 HOH B 80 780 228 HOH HOH . J 7 HOH B 81 781 229 HOH HOH . J 7 HOH B 82 782 230 HOH HOH . J 7 HOH B 83 783 231 HOH HOH . J 7 HOH B 84 784 243 HOH HOH . J 7 HOH B 85 785 244 HOH HOH . J 7 HOH B 86 786 245 HOH HOH . J 7 HOH B 87 787 246 HOH HOH . J 7 HOH B 88 788 247 HOH HOH . J 7 HOH B 89 789 248 HOH HOH . J 7 HOH B 90 790 249 HOH HOH . J 7 HOH B 91 791 250 HOH HOH . J 7 HOH B 92 792 251 HOH HOH . J 7 HOH B 93 793 252 HOH HOH . J 7 HOH B 94 794 253 HOH HOH . J 7 HOH B 95 795 259 HOH HOH . J 7 HOH B 96 796 260 HOH HOH . J 7 HOH B 97 797 262 HOH HOH . J 7 HOH B 98 798 263 HOH HOH . J 7 HOH B 99 799 266 HOH HOH . J 7 HOH B 100 800 267 HOH HOH . J 7 HOH B 101 801 269 HOH HOH . J 7 HOH B 102 802 270 HOH HOH . J 7 HOH B 103 803 274 HOH HOH . J 7 HOH B 104 804 275 HOH HOH . J 7 HOH B 105 805 281 HOH HOH . K 7 HOH F 1 701 264 HOH HOH . K 7 HOH F 2 702 277 HOH HOH . K 7 HOH F 3 703 278 HOH HOH . K 7 HOH F 4 704 279 HOH HOH . L 7 HOH G 1 701 280 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . H 6 -22.442 -19.871 59.082 1 50.09 ? C1 EDO 603 B 1 HETATM 2 O O1 EDO . . . H 6 -21.954 -21.146 58.647 1 54.01 ? O1 EDO 603 B 1 HETATM 3 C C2 EDO . . . H 6 -22.433 -19.838 60.604 1 54.05 ? C2 EDO 603 B 1 HETATM 4 O O2 EDO . . . H 6 -21.158 -20.308 61.058 1 56.94 ? O2 EDO 603 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #