data_4MGI # _model_server_result.job_id 3XkWsdiNMw0-nR_rW3cV5Q _model_server_result.datetime_utc '2025-01-11 07:47:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4mgi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1002}' # _entry.id 4MGI # _exptl.entry_id 4MGI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 329.206 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4MGI _cell.length_a 125.318 _cell.length_b 148.497 _cell.length_c 224.72 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4MGI _symmetry.cell_setting ? _symmetry.Int_Tables_number 24 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1 A,B,C,D,E,F,G 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_554 x,-y,-z-1/2 1 0 0 0 -1 0 0 0 -1 0 0 -112.36 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _chem_comp.formula 'C10 H12 N5 O6 P' _chem_comp.formula_weight 329.206 _chem_comp.id CMP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'CYCLIC AMP;CAMP' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P CMP doub 70 n n P O2P CMP sing 71 n n P O5' CMP sing 72 n n P O3' CMP sing 73 n n O2P HOP2 CMP sing 74 n n O5' C5' CMP sing 75 n n C5' C4' CMP sing 76 n n C5' "H5'1" CMP sing 77 n n C5' "H5'2" CMP sing 78 n n C4' O4' CMP sing 79 n n C4' C3' CMP sing 80 n n C4' H4' CMP sing 81 n n O4' C1' CMP sing 82 n n C3' O3' CMP sing 83 n n C3' C2' CMP sing 84 n n C3' H3' CMP sing 85 n n C2' O2' CMP sing 86 n n C2' C1' CMP sing 87 n n C2' H2' CMP sing 88 n n O2' HO2' CMP sing 89 n n C1' N9 CMP sing 90 n n C1' H1' CMP sing 91 n n N9 C8 CMP sing 92 n y N9 C4 CMP sing 93 n y C8 N7 CMP doub 94 n y C8 H8 CMP sing 95 n n N7 C5 CMP sing 96 n y C5 C6 CMP sing 97 n y C5 C4 CMP doub 98 n y C6 N6 CMP sing 99 n n C6 N1 CMP doub 100 n y N6 HN61 CMP sing 101 n n N6 HN62 CMP sing 102 n n N1 C2 CMP sing 103 n y C2 N3 CMP doub 104 n y C2 H2 CMP sing 105 n n N3 C4 CMP sing 106 n y # _atom_sites.entry_id 4MGI _atom_sites.fract_transf_matrix[1][1] 0.00798 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006734 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00445 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CMP E 1 1001 2 CMP CMP . D 3 CMP E 1 1002 3 CMP CMP . E 4 SO4 R 1 201 1 SO4 SO4 . F 5 HOH E 1 1101 1 HOH HOH . F 5 HOH E 2 1102 2 HOH HOH . F 5 HOH E 3 1103 3 HOH HOH . F 5 HOH E 4 1104 4 HOH HOH . F 5 HOH E 5 1105 5 HOH HOH . F 5 HOH E 6 1106 6 HOH HOH . F 5 HOH E 7 1107 7 HOH HOH . F 5 HOH E 8 1108 9 HOH HOH . F 5 HOH E 9 1109 10 HOH HOH . F 5 HOH E 10 1110 11 HOH HOH . F 5 HOH E 11 1111 12 HOH HOH . F 5 HOH E 12 1112 13 HOH HOH . F 5 HOH E 13 1113 14 HOH HOH . F 5 HOH E 14 1114 15 HOH HOH . F 5 HOH E 15 1115 16 HOH HOH . F 5 HOH E 16 1116 17 HOH HOH . F 5 HOH E 17 1117 18 HOH HOH . F 5 HOH E 18 1118 19 HOH HOH . F 5 HOH E 19 1119 20 HOH HOH . F 5 HOH E 20 1120 21 HOH HOH . F 5 HOH E 21 1121 23 HOH HOH . F 5 HOH E 22 1122 24 HOH HOH . F 5 HOH E 23 1123 26 HOH HOH . F 5 HOH E 24 1124 27 HOH HOH . F 5 HOH E 25 1125 28 HOH HOH . F 5 HOH E 26 1126 29 HOH HOH . F 5 HOH E 27 1127 30 HOH HOH . F 5 HOH E 28 1128 33 HOH HOH . F 5 HOH E 29 1129 34 HOH HOH . F 5 HOH E 30 1130 35 HOH HOH . F 5 HOH E 31 1131 36 HOH HOH . F 5 HOH E 32 1132 38 HOH HOH . F 5 HOH E 33 1133 39 HOH HOH . F 5 HOH E 34 1134 40 HOH HOH . F 5 HOH E 35 1135 41 HOH HOH . F 5 HOH E 36 1136 42 HOH HOH . F 5 HOH E 37 1137 43 HOH HOH . F 5 HOH E 38 1138 44 HOH HOH . F 5 HOH E 39 1139 45 HOH HOH . F 5 HOH E 40 1140 46 HOH HOH . F 5 HOH E 41 1141 47 HOH HOH . F 5 HOH E 42 1142 48 HOH HOH . F 5 HOH E 43 1143 49 HOH HOH . F 5 HOH E 44 1144 50 HOH HOH . F 5 HOH E 45 1145 51 HOH HOH . F 5 HOH E 46 1146 54 HOH HOH . F 5 HOH E 47 1147 55 HOH HOH . F 5 HOH E 48 1148 56 HOH HOH . F 5 HOH E 49 1149 57 HOH HOH . F 5 HOH E 50 1150 59 HOH HOH . F 5 HOH E 51 1151 60 HOH HOH . F 5 HOH E 52 1152 61 HOH HOH . F 5 HOH E 53 1153 62 HOH HOH . F 5 HOH E 54 1154 63 HOH HOH . F 5 HOH E 55 1155 64 HOH HOH . F 5 HOH E 56 1156 65 HOH HOH . F 5 HOH E 57 1157 66 HOH HOH . F 5 HOH E 58 1158 67 HOH HOH . F 5 HOH E 59 1159 68 HOH HOH . F 5 HOH E 60 1160 69 HOH HOH . F 5 HOH E 61 1161 70 HOH HOH . F 5 HOH E 62 1162 71 HOH HOH . F 5 HOH E 63 1163 72 HOH HOH . F 5 HOH E 64 1164 73 HOH HOH . F 5 HOH E 65 1165 74 HOH HOH . F 5 HOH E 66 1166 75 HOH HOH . F 5 HOH E 67 1167 76 HOH HOH . F 5 HOH E 68 1168 77 HOH HOH . F 5 HOH E 69 1169 78 HOH HOH . F 5 HOH E 70 1170 79 HOH HOH . F 5 HOH E 71 1171 82 HOH HOH . F 5 HOH E 72 1172 83 HOH HOH . F 5 HOH E 73 1173 84 HOH HOH . F 5 HOH E 74 1174 85 HOH HOH . F 5 HOH E 75 1175 86 HOH HOH . F 5 HOH E 76 1176 87 HOH HOH . F 5 HOH E 77 1177 88 HOH HOH . F 5 HOH E 78 1178 89 HOH HOH . F 5 HOH E 79 1179 90 HOH HOH . F 5 HOH E 80 1180 91 HOH HOH . F 5 HOH E 81 1181 92 HOH HOH . F 5 HOH E 82 1182 93 HOH HOH . F 5 HOH E 83 1183 94 HOH HOH . F 5 HOH E 84 1184 95 HOH HOH . F 5 HOH E 85 1185 96 HOH HOH . F 5 HOH E 86 1186 97 HOH HOH . G 5 HOH R 1 301 8 HOH HOH . G 5 HOH R 2 302 22 HOH HOH . G 5 HOH R 3 303 25 HOH HOH . G 5 HOH R 4 304 31 HOH HOH . G 5 HOH R 5 305 32 HOH HOH . G 5 HOH R 6 306 37 HOH HOH . G 5 HOH R 7 307 52 HOH HOH . G 5 HOH R 8 308 53 HOH HOH . G 5 HOH R 9 309 58 HOH HOH . G 5 HOH R 10 310 80 HOH HOH . G 5 HOH R 11 311 81 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P CMP . . . D 3 -4.851 -30.225 -62.444 1 36.14 ? P CMP 1002 E 1 HETATM 2 O O1P CMP . . . D 3 -5.277 -31.434 -61.65 1 36.19 ? O1P CMP 1002 E 1 HETATM 3 O O2P CMP . . . D 3 -3.482 -29.597 -62.234 1 34.15 ? O2P CMP 1002 E 1 HETATM 4 O O5' CMP . . . D 3 -5.966 -29.079 -62.193 1 36.33 ? O5' CMP 1002 E 1 HETATM 5 C C5' CMP . . . D 3 -6.142 -27.989 -63.111 1 36.58 ? C5' CMP 1002 E 1 HETATM 6 C C4' CMP . . . D 3 -6.313 -28.586 -64.5 1 36.82 ? C4' CMP 1002 E 1 HETATM 7 O O4' CMP . . . D 3 -6.37 -27.645 -65.566 1 37.33 ? O4' CMP 1002 E 1 HETATM 8 C C3' CMP . . . D 3 -5.103 -29.417 -64.862 1 36.83 ? C3' CMP 1002 E 1 HETATM 9 O O3' CMP . . . D 3 -5.051 -30.561 -64.013 1 36.32 ? O3' CMP 1002 E 1 HETATM 10 C C2' CMP . . . D 3 -5.265 -29.614 -66.355 1 37.19 ? C2' CMP 1002 E 1 HETATM 11 O O2' CMP . . . D 3 -6.106 -30.729 -66.656 1 37.3 ? O2' CMP 1002 E 1 HETATM 12 C C1' CMP . . . D 3 -5.951 -28.31 -66.767 1 37.88 ? C1' CMP 1002 E 1 HETATM 13 N N9 CMP . . . D 3 -5.039 -27.429 -67.549 1 38.8 ? N9 CMP 1002 E 1 HETATM 14 C C8 CMP . . . D 3 -5.401 -26.731 -68.643 1 38.89 ? C8 CMP 1002 E 1 HETATM 15 N N7 CMP . . . D 3 -4.358 -26.023 -69.147 1 39.04 ? N7 CMP 1002 E 1 HETATM 16 C C5 CMP . . . D 3 -3.293 -26.263 -68.363 1 39.23 ? C5 CMP 1002 E 1 HETATM 17 C C6 CMP . . . D 3 -1.874 -25.836 -68.32 1 39.69 ? C6 CMP 1002 E 1 HETATM 18 N N6 CMP . . . D 3 -1.373 -24.987 -69.247 1 40.55 ? N6 CMP 1002 E 1 HETATM 19 N N1 CMP . . . D 3 -1.09 -26.32 -67.328 1 39.48 ? N1 CMP 1002 E 1 HETATM 20 C C2 CMP . . . D 3 -1.562 -27.163 -66.395 1 38.97 ? C2 CMP 1002 E 1 HETATM 21 N N3 CMP . . . D 3 -2.836 -27.587 -66.374 1 39.04 ? N3 CMP 1002 E 1 HETATM 22 C C4 CMP . . . D 3 -3.74 -27.186 -67.308 1 39.19 ? C4 CMP 1002 E 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 22 #