data_4MGJ
#
_model_server_result.job_id            dtZOwNlUUKulEdYYWqUPBA 
_model_server_result.datetime_utc      '2024-11-13 18:04:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4mgj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":501}' 
#
_entry.id    4MGJ 
#
_exptl.entry_id    4MGJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4MGJ 
_cell.length_a            91.49 
_cell.length_b            91.49 
_cell.length_c            150.38 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4MGJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 417 A CYS 436 1_555 B FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? 
metalc ? metalc2 B FE HEM . A HEM 501 1_555 C N1 CPZ . A CPZ 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 149 n n 
CHA C4D HEM doub 150 n n 
CHA HHA HEM sing 151 n n 
CHB C4A HEM sing 152 n n 
CHB C1B HEM doub 153 n n 
CHB HHB HEM sing 154 n n 
CHC C4B HEM sing 155 n n 
CHC C1C HEM doub 156 n n 
CHC HHC HEM sing 157 n n 
CHD C4C HEM doub 158 n n 
CHD C1D HEM sing 159 n n 
CHD HHD HEM sing 160 n n 
C1A C2A HEM doub 161 n y 
C1A NA HEM sing 162 n y 
C2A C3A HEM sing 163 n y 
C2A CAA HEM sing 164 n n 
C3A C4A HEM doub 165 n y 
C3A CMA HEM sing 166 n n 
C4A NA HEM sing 167 n y 
CMA HMA HEM sing 168 n n 
CMA HMAA HEM sing 169 n n 
CMA HMAB HEM sing 170 n n 
CAA CBA HEM sing 171 n n 
CAA HAA HEM sing 172 n n 
CAA HAAA HEM sing 173 n n 
CBA CGA HEM sing 174 n n 
CBA HBA HEM sing 175 n n 
CBA HBAA HEM sing 176 n n 
CGA O1A HEM doub 177 n n 
CGA O2A HEM sing 178 n n 
C1B C2B HEM sing 179 n n 
C1B NB HEM sing 180 n n 
C2B C3B HEM doub 181 n n 
C2B CMB HEM sing 182 n n 
C3B C4B HEM sing 183 n n 
C3B CAB HEM sing 184 n n 
C4B NB HEM doub 185 n n 
CMB HMB HEM sing 186 n n 
CMB HMBA HEM sing 187 n n 
CMB HMBB HEM sing 188 n n 
CAB CBB HEM doub 189 n n 
CAB HAB HEM sing 190 n n 
CBB HBB HEM sing 191 n n 
CBB HBBA HEM sing 192 n n 
C1C C2C HEM sing 193 n y 
C1C NC HEM sing 194 n y 
C2C C3C HEM doub 195 n y 
C2C CMC HEM sing 196 n n 
C3C C4C HEM sing 197 n y 
C3C CAC HEM sing 198 n n 
C4C NC HEM sing 199 n y 
CMC HMC HEM sing 200 n n 
CMC HMCA HEM sing 201 n n 
CMC HMCB HEM sing 202 n n 
CAC CBC HEM doub 203 n n 
CAC HAC HEM sing 204 n n 
CBC HBC HEM sing 205 n n 
CBC HBCA HEM sing 206 n n 
C1D C2D HEM sing 207 n n 
C1D ND HEM doub 208 n n 
C2D C3D HEM doub 209 n n 
C2D CMD HEM sing 210 n n 
C3D C4D HEM sing 211 n n 
C3D CAD HEM sing 212 n n 
C4D ND HEM sing 213 n n 
CMD HMD HEM sing 214 n n 
CMD HMDA HEM sing 215 n n 
CMD HMDB HEM sing 216 n n 
CAD CBD HEM sing 217 n n 
CAD HAD HEM sing 218 n n 
CAD HADA HEM sing 219 n n 
CBD CGD HEM sing 220 n n 
CBD HBD HEM sing 221 n n 
CBD HBDA HEM sing 222 n n 
CGD O1D HEM doub 223 n n 
CGD O2D HEM sing 224 n n 
O2A H2A HEM sing 225 n n 
O2D H2D HEM sing 226 n n 
FE NA HEM sing 227 n n 
FE NB HEM sing 228 n n 
FE NC HEM sing 229 n n 
FE ND HEM sing 230 n n 
#
_atom_sites.entry_id                     4MGJ 
_atom_sites.fract_transf_matrix[1][1]    0.01093 
_atom_sites.fract_transf_matrix[1][2]    0.006311 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012621 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00665 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 501 500 HEM HEM . 
C 3 CPZ A 1 502 600 CPZ CPZ . 
D 4 HOH A 1 601 1 HOH HOH . 
D 4 HOH A 2 602 2 HOH HOH . 
D 4 HOH A 3 603 3 HOH HOH . 
D 4 HOH A 4 604 4 HOH HOH . 
D 4 HOH A 5 605 5 HOH HOH . 
D 4 HOH A 6 606 6 HOH HOH . 
D 4 HOH A 7 607 7 HOH HOH . 
D 4 HOH A 8 608 9 HOH HOH . 
D 4 HOH A 9 609 10 HOH HOH . 
D 4 HOH A 10 610 11 HOH HOH . 
D 4 HOH A 11 611 12 HOH HOH . 
D 4 HOH A 12 612 13 HOH HOH . 
D 4 HOH A 13 613 14 HOH HOH . 
D 4 HOH A 14 614 15 HOH HOH . 
D 4 HOH A 15 615 17 HOH HOH . 
D 4 HOH A 16 616 18 HOH HOH . 
D 4 HOH A 17 617 19 HOH HOH . 
D 4 HOH A 18 618 20 HOH HOH . 
D 4 HOH A 19 619 21 HOH HOH . 
D 4 HOH A 20 620 23 HOH HOH . 
D 4 HOH A 21 621 24 HOH HOH . 
D 4 HOH A 22 622 25 HOH HOH . 
D 4 HOH A 23 623 27 HOH HOH . 
D 4 HOH A 24 624 28 HOH HOH . 
D 4 HOH A 25 625 29 HOH HOH . 
D 4 HOH A 26 626 32 HOH HOH . 
D 4 HOH A 27 627 34 HOH HOH . 
D 4 HOH A 28 628 35 HOH HOH . 
D 4 HOH A 29 629 37 HOH HOH . 
D 4 HOH A 30 630 38 HOH HOH . 
D 4 HOH A 31 631 39 HOH HOH . 
D 4 HOH A 32 632 40 HOH HOH . 
D 4 HOH A 33 633 42 HOH HOH . 
D 4 HOH A 34 634 43 HOH HOH . 
D 4 HOH A 35 635 46 HOH HOH . 
D 4 HOH A 36 636 48 HOH HOH . 
D 4 HOH A 37 637 49 HOH HOH . 
D 4 HOH A 38 638 50 HOH HOH . 
D 4 HOH A 39 639 51 HOH HOH . 
D 4 HOH A 40 640 52 HOH HOH . 
D 4 HOH A 41 641 53 HOH HOH . 
D 4 HOH A 42 642 55 HOH HOH . 
D 4 HOH A 43 643 57 HOH HOH . 
D 4 HOH A 44 644 58 HOH HOH . 
D 4 HOH A 45 645 59 HOH HOH . 
D 4 HOH A 46 646 60 HOH HOH . 
D 4 HOH A 47 647 61 HOH HOH . 
D 4 HOH A 48 648 65 HOH HOH . 
D 4 HOH A 49 649 66 HOH HOH . 
D 4 HOH A 50 650 68 HOH HOH . 
D 4 HOH A 51 651 69 HOH HOH . 
D 4 HOH A 52 652 71 HOH HOH . 
D 4 HOH A 53 653 73 HOH HOH . 
D 4 HOH A 54 654 74 HOH HOH . 
D 4 HOH A 55 655 75 HOH HOH . 
D 4 HOH A 56 656 76 HOH HOH . 
D 4 HOH A 57 657 77 HOH HOH . 
D 4 HOH A 58 658 78 HOH HOH . 
D 4 HOH A 59 659 80 HOH HOH . 
D 4 HOH A 60 660 84 HOH HOH . 
D 4 HOH A 61 661 86 HOH HOH . 
D 4 HOH A 62 662 89 HOH HOH . 
D 4 HOH A 63 663 95 HOH HOH . 
D 4 HOH A 64 664 99 HOH HOH . 
D 4 HOH A 65 665 100 HOH HOH . 
D 4 HOH A 66 666 101 HOH HOH . 
D 4 HOH A 67 667 106 HOH HOH . 
D 4 HOH A 68 668 108 HOH HOH . 
D 4 HOH A 69 669 110 HOH HOH . 
D 4 HOH A 70 670 111 HOH HOH . 
D 4 HOH A 71 671 118 HOH HOH . 
D 4 HOH A 72 672 120 HOH HOH . 
D 4 HOH A 73 673 121 HOH HOH . 
D 4 HOH A 74 674 123 HOH HOH . 
D 4 HOH A 75 675 127 HOH HOH . 
D 4 HOH A 76 676 128 HOH HOH . 
D 4 HOH A 77 677 129 HOH HOH . 
D 4 HOH A 78 678 131 HOH HOH . 
D 4 HOH A 79 679 134 HOH HOH . 
D 4 HOH A 80 680 136 HOH HOH . 
D 4 HOH A 81 681 138 HOH HOH . 
D 4 HOH A 82 682 145 HOH HOH . 
D 4 HOH A 83 683 147 HOH HOH . 
D 4 HOH A 84 684 158 HOH HOH . 
D 4 HOH A 85 685 159 HOH HOH . 
D 4 HOH A 86 686 162 HOH HOH . 
D 4 HOH A 87 687 165 HOH HOH . 
D 4 HOH A 88 688 166 HOH HOH . 
D 4 HOH A 89 689 167 HOH HOH . 
D 4 HOH A 90 690 174 HOH HOH . 
D 4 HOH A 91 691 175 HOH HOH . 
D 4 HOH A 92 692 176 HOH HOH . 
D 4 HOH A 93 693 180 HOH HOH . 
D 4 HOH A 94 694 191 HOH HOH . 
D 4 HOH A 95 695 193 HOH HOH . 
D 4 HOH A 96 696 195 HOH HOH . 
D 4 HOH A 97 697 206 HOH HOH . 
D 4 HOH A 98 698 210 HOH HOH . 
D 4 HOH A 99 699 211 HOH HOH . 
D 4 HOH A 100 700 212 HOH HOH . 
D 4 HOH A 101 701 219 HOH HOH . 
D 4 HOH A 102 702 220 HOH HOH . 
D 4 HOH A 103 703 225 HOH HOH . 
D 4 HOH A 104 704 229 HOH HOH . 
D 4 HOH A 105 705 230 HOH HOH . 
D 4 HOH A 106 706 231 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . B 2 39.666 -0.651 10.52 1 50.16 ? CHA HEM 501 A 1 
HETATM 2 C CHB HEM . . . B 2 41.934 -1.932 6.376 1 50.21 ? CHB HEM 501 A 1 
HETATM 3 C CHC HEM . . . B 2 43.602 -5.968 8.639 1 53.97 ? CHC HEM 501 A 1 
HETATM 4 C CHD HEM . . . B 2 41.318 -4.731 12.822 1 52.15 ? CHD HEM 501 A 1 
HETATM 5 C C1A HEM . . . B 2 40.112 -0.647 9.209 1 51.18 ? C1A HEM 501 A 1 
HETATM 6 C C2A HEM . . . B 2 39.744 0.31 8.169 1 49.2 ? C2A HEM 501 A 1 
HETATM 7 C C3A HEM . . . B 2 40.394 -0.012 7.018 1 48.55 ? C3A HEM 501 A 1 
HETATM 8 C C4A HEM . . . B 2 41.162 -1.228 7.271 1 50.02 ? C4A HEM 501 A 1 
HETATM 9 C CMA HEM . . . B 2 40.35 0.757 5.686 1 46.99 ? CMA HEM 501 A 1 
HETATM 10 C CAA HEM . . . B 2 38.799 1.496 8.416 1 48.56 ? CAA HEM 501 A 1 
HETATM 11 C CBA HEM . . . B 2 39.478 2.569 9.249 1 48.7 ? CBA HEM 501 A 1 
HETATM 12 C CGA HEM . . . B 2 38.552 3.741 9.307 1 52.8 ? CGA HEM 501 A 1 
HETATM 13 O O1A HEM . . . B 2 37.398 3.59 9.804 1 53.76 ? O1A HEM 501 A 1 
HETATM 14 O O2A HEM . . . B 2 38.907 4.864 8.859 1 57.46 ? O2A HEM 501 A 1 
HETATM 15 C C1B HEM . . . B 2 42.556 -3.155 6.598 1 50.39 ? C1B HEM 501 A 1 
HETATM 16 C C2B HEM . . . B 2 43.338 -3.923 5.632 1 46.74 ? C2B HEM 501 A 1 
HETATM 17 C C3B HEM . . . B 2 43.809 -5.054 6.255 1 49.56 ? C3B HEM 501 A 1 
HETATM 18 C C4B HEM . . . B 2 43.361 -5.014 7.653 1 50.87 ? C4B HEM 501 A 1 
HETATM 19 C CMB HEM . . . B 2 43.488 -3.445 4.186 1 39.65 ? CMB HEM 501 A 1 
HETATM 20 C CAB HEM . . . B 2 44.685 -6.206 5.678 1 49.19 ? CAB HEM 501 A 1 
HETATM 21 C CBB HEM . . . B 2 45.453 -6.084 4.604 1 43.94 ? CBB HEM 501 A 1 
HETATM 22 C C1C HEM . . . B 2 43.147 -5.988 9.964 1 55.05 ? C1C HEM 501 A 1 
HETATM 23 C C2C HEM . . . B 2 43.561 -6.929 11.012 1 53.72 ? C2C HEM 501 A 1 
HETATM 24 C C3C HEM . . . B 2 42.928 -6.58 12.183 1 52.04 ? C3C HEM 501 A 1 
HETATM 25 C C4C HEM . . . B 2 42.109 -5.407 11.907 1 52.31 ? C4C HEM 501 A 1 
HETATM 26 C CMC HEM . . . B 2 44.531 -8.095 10.73 1 51.84 ? CMC HEM 501 A 1 
HETATM 27 C CAC HEM . . . B 2 42.939 -7.269 13.581 1 51.72 ? CAC HEM 501 A 1 
HETATM 28 C CBC HEM . . . B 2 44.001 -7.904 14.067 1 51.35 ? CBC HEM 501 A 1 
HETATM 29 C C1D HEM . . . B 2 40.644 -3.544 12.599 1 51.19 ? C1D HEM 501 A 1 
HETATM 30 C C2D HEM . . . B 2 39.76 -2.89 13.542 1 53.42 ? C2D HEM 501 A 1 
HETATM 31 C C3D HEM . . . B 2 39.217 -1.642 12.804 1 52.56 ? C3D HEM 501 A 1 
HETATM 32 C C4D HEM . . . B 2 39.866 -1.62 11.506 1 51.85 ? C4D HEM 501 A 1 
HETATM 33 C CMD HEM . . . B 2 39.399 -3.378 14.953 1 52.57 ? CMD HEM 501 A 1 
HETATM 34 C CAD HEM . . . B 2 38.282 -0.565 13.358 1 54.26 ? CAD HEM 501 A 1 
HETATM 35 C CBD HEM . . . B 2 39.134 0.516 13.986 1 58.77 ? CBD HEM 501 A 1 
HETATM 36 C CGD HEM . . . B 2 38.269 1.524 14.699 1 61.4 ? CGD HEM 501 A 1 
HETATM 37 O O1D HEM . . . B 2 38.714 2.159 15.71 1 61.27 ? O1D HEM 501 A 1 
HETATM 38 O O2D HEM . . . B 2 37.091 1.708 14.27 1 60.41 ? O2D HEM 501 A 1 
HETATM 39 N NA HEM . . . B 2 40.949 -1.596 8.604 1 54.1 ? NA HEM 501 A 1 
HETATM 40 N NB HEM . . . B 2 42.594 -3.852 7.806 1 52.39 ? NB HEM 501 A 1 
HETATM 41 N NC HEM . . . B 2 42.281 -5.061 10.565 1 52.83 ? NC HEM 501 A 1 
HETATM 42 N ND HEM . . . B 2 40.704 -2.746 11.444 1 52.6 ? ND HEM 501 A 1 
HETATM 43 FE FE HEM . . . B 2 41.605 -3.287 9.603 1 54.09 ? FE HEM 501 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           376 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           43 
#