data_4MGK # _model_server_result.job_id uXLwv9CF3BjnN8bbRHtA7g _model_server_result.datetime_utc '2025-01-11 09:54:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4mgk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1001}' # _entry.id 4MGK # _exptl.entry_id 4MGK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 329.206 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4MGK _cell.length_a 125.04 _cell.length_b 144.55 _cell.length_c 227.84 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4MGK _symmetry.cell_setting ? _symmetry.Int_Tables_number 24 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,B,C,D,E,F 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_554 x,-y,-z-1/2 1 0 0 0 -1 0 0 0 -1 0 0 -113.92 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H12 N5 O6 P' _chem_comp.formula_weight 329.206 _chem_comp.id CMP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'CYCLIC AMP;CAMP' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P CMP doub 70 n n P O2P CMP sing 71 n n P O5' CMP sing 72 n n P O3' CMP sing 73 n n O2P HOP2 CMP sing 74 n n O5' C5' CMP sing 75 n n C5' C4' CMP sing 76 n n C5' "H5'1" CMP sing 77 n n C5' "H5'2" CMP sing 78 n n C4' O4' CMP sing 79 n n C4' C3' CMP sing 80 n n C4' H4' CMP sing 81 n n O4' C1' CMP sing 82 n n C3' O3' CMP sing 83 n n C3' C2' CMP sing 84 n n C3' H3' CMP sing 85 n n C2' O2' CMP sing 86 n n C2' C1' CMP sing 87 n n C2' H2' CMP sing 88 n n O2' HO2' CMP sing 89 n n C1' N9 CMP sing 90 n n C1' H1' CMP sing 91 n n N9 C8 CMP sing 92 n y N9 C4 CMP sing 93 n y C8 N7 CMP doub 94 n y C8 H8 CMP sing 95 n n N7 C5 CMP sing 96 n y C5 C6 CMP sing 97 n y C5 C4 CMP doub 98 n y C6 N6 CMP sing 99 n n C6 N1 CMP doub 100 n y N6 HN61 CMP sing 101 n n N6 HN62 CMP sing 102 n n N1 C2 CMP sing 103 n y C2 N3 CMP doub 104 n y C2 H2 CMP sing 105 n n N3 C4 CMP sing 106 n y # _atom_sites.entry_id 4MGK _atom_sites.fract_transf_matrix[1][1] 0.007997 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006918 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004389 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CMP E 1 1001 2 CMP CMP . D 4 SO4 R 1 201 1 SO4 SO4 . E 5 HOH E 1 1101 1 HOH HOH . E 5 HOH E 2 1102 2 HOH HOH . E 5 HOH E 3 1103 3 HOH HOH . E 5 HOH E 4 1104 4 HOH HOH . E 5 HOH E 5 1105 5 HOH HOH . E 5 HOH E 6 1106 6 HOH HOH . E 5 HOH E 7 1107 7 HOH HOH . E 5 HOH E 8 1108 9 HOH HOH . E 5 HOH E 9 1109 10 HOH HOH . E 5 HOH E 10 1110 11 HOH HOH . E 5 HOH E 11 1111 12 HOH HOH . E 5 HOH E 12 1112 13 HOH HOH . E 5 HOH E 13 1113 14 HOH HOH . E 5 HOH E 14 1114 15 HOH HOH . E 5 HOH E 15 1115 16 HOH HOH . E 5 HOH E 16 1116 18 HOH HOH . E 5 HOH E 17 1117 19 HOH HOH . E 5 HOH E 18 1118 20 HOH HOH . E 5 HOH E 19 1119 21 HOH HOH . E 5 HOH E 20 1120 22 HOH HOH . E 5 HOH E 21 1121 24 HOH HOH . E 5 HOH E 22 1122 25 HOH HOH . E 5 HOH E 23 1123 26 HOH HOH . E 5 HOH E 24 1124 27 HOH HOH . E 5 HOH E 25 1125 29 HOH HOH . E 5 HOH E 26 1126 30 HOH HOH . E 5 HOH E 27 1127 31 HOH HOH . E 5 HOH E 28 1128 32 HOH HOH . E 5 HOH E 29 1129 34 HOH HOH . E 5 HOH E 30 1130 36 HOH HOH . E 5 HOH E 31 1131 38 HOH HOH . E 5 HOH E 32 1132 39 HOH HOH . E 5 HOH E 33 1133 40 HOH HOH . E 5 HOH E 34 1134 41 HOH HOH . E 5 HOH E 35 1135 42 HOH HOH . E 5 HOH E 36 1136 43 HOH HOH . E 5 HOH E 37 1137 44 HOH HOH . E 5 HOH E 38 1138 45 HOH HOH . E 5 HOH E 39 1139 46 HOH HOH . E 5 HOH E 40 1140 47 HOH HOH . E 5 HOH E 41 1141 48 HOH HOH . E 5 HOH E 42 1142 49 HOH HOH . E 5 HOH E 43 1143 51 HOH HOH . E 5 HOH E 44 1144 52 HOH HOH . E 5 HOH E 45 1145 53 HOH HOH . E 5 HOH E 46 1146 54 HOH HOH . E 5 HOH E 47 1147 55 HOH HOH . E 5 HOH E 48 1148 56 HOH HOH . E 5 HOH E 49 1149 57 HOH HOH . E 5 HOH E 50 1150 58 HOH HOH . E 5 HOH E 51 1151 60 HOH HOH . E 5 HOH E 52 1152 61 HOH HOH . E 5 HOH E 53 1153 62 HOH HOH . E 5 HOH E 54 1154 63 HOH HOH . E 5 HOH E 55 1155 64 HOH HOH . E 5 HOH E 56 1156 65 HOH HOH . E 5 HOH E 57 1157 66 HOH HOH . E 5 HOH E 58 1158 68 HOH HOH . E 5 HOH E 59 1159 69 HOH HOH . E 5 HOH E 60 1160 70 HOH HOH . E 5 HOH E 61 1161 71 HOH HOH . E 5 HOH E 62 1162 72 HOH HOH . E 5 HOH E 63 1163 73 HOH HOH . E 5 HOH E 64 1164 74 HOH HOH . E 5 HOH E 65 1165 75 HOH HOH . E 5 HOH E 66 1166 76 HOH HOH . E 5 HOH E 67 1167 78 HOH HOH . E 5 HOH E 68 1168 79 HOH HOH . E 5 HOH E 69 1169 80 HOH HOH . E 5 HOH E 70 1170 81 HOH HOH . E 5 HOH E 71 1171 82 HOH HOH . E 5 HOH E 72 1172 83 HOH HOH . E 5 HOH E 73 1173 84 HOH HOH . E 5 HOH E 74 1174 85 HOH HOH . E 5 HOH E 75 1175 86 HOH HOH . E 5 HOH E 76 1176 87 HOH HOH . E 5 HOH E 77 1177 88 HOH HOH . E 5 HOH E 78 1178 89 HOH HOH . E 5 HOH E 79 1179 90 HOH HOH . E 5 HOH E 80 1180 91 HOH HOH . E 5 HOH E 81 1181 92 HOH HOH . E 5 HOH E 82 1182 93 HOH HOH . E 5 HOH E 83 1183 94 HOH HOH . E 5 HOH E 84 1184 95 HOH HOH . E 5 HOH E 85 1185 96 HOH HOH . E 5 HOH E 86 1186 97 HOH HOH . E 5 HOH E 87 1187 98 HOH HOH . E 5 HOH E 88 1188 100 HOH HOH . E 5 HOH E 89 1189 101 HOH HOH . E 5 HOH E 90 1190 102 HOH HOH . E 5 HOH E 91 1191 103 HOH HOH . E 5 HOH E 92 1192 104 HOH HOH . E 5 HOH E 93 1193 105 HOH HOH . E 5 HOH E 94 1194 106 HOH HOH . E 5 HOH E 95 1195 107 HOH HOH . E 5 HOH E 96 1196 108 HOH HOH . E 5 HOH E 97 1197 109 HOH HOH . E 5 HOH E 98 1198 110 HOH HOH . E 5 HOH E 99 1199 111 HOH HOH . E 5 HOH E 100 1200 112 HOH HOH . E 5 HOH E 101 1201 113 HOH HOH . E 5 HOH E 102 1202 114 HOH HOH . E 5 HOH E 103 1203 116 HOH HOH . E 5 HOH E 104 1204 117 HOH HOH . E 5 HOH E 105 1205 118 HOH HOH . E 5 HOH E 106 1206 119 HOH HOH . E 5 HOH E 107 1207 121 HOH HOH . E 5 HOH E 108 1208 123 HOH HOH . E 5 HOH E 109 1209 124 HOH HOH . E 5 HOH E 110 1210 125 HOH HOH . E 5 HOH E 111 1211 126 HOH HOH . E 5 HOH E 112 1212 127 HOH HOH . E 5 HOH E 113 1213 128 HOH HOH . E 5 HOH E 114 1214 130 HOH HOH . E 5 HOH E 115 1215 131 HOH HOH . E 5 HOH E 116 1216 132 HOH HOH . E 5 HOH E 117 1217 133 HOH HOH . E 5 HOH E 118 1218 134 HOH HOH . E 5 HOH E 119 1219 135 HOH HOH . E 5 HOH E 120 1220 136 HOH HOH . E 5 HOH E 121 1221 137 HOH HOH . F 5 HOH R 1 301 8 HOH HOH . F 5 HOH R 2 302 17 HOH HOH . F 5 HOH R 3 303 23 HOH HOH . F 5 HOH R 4 304 28 HOH HOH . F 5 HOH R 5 305 33 HOH HOH . F 5 HOH R 6 306 35 HOH HOH . F 5 HOH R 7 307 37 HOH HOH . F 5 HOH R 8 308 50 HOH HOH . F 5 HOH R 9 309 59 HOH HOH . F 5 HOH R 10 310 67 HOH HOH . F 5 HOH R 11 311 77 HOH HOH . F 5 HOH R 12 312 99 HOH HOH . F 5 HOH R 13 313 115 HOH HOH . F 5 HOH R 14 314 120 HOH HOH . F 5 HOH R 15 315 122 HOH HOH . F 5 HOH R 16 316 129 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P CMP . . . C 3 7.813 -18.3 -63.679 1 32.29 ? P CMP 1001 E 1 HETATM 2 O O1P CMP . . . C 3 8.351 -19.38 -62.776 1 32.17 ? O1P CMP 1001 E 1 HETATM 3 O O2P CMP . . . C 3 8.704 -17.756 -64.764 1 32.41 ? O2P CMP 1001 E 1 HETATM 4 O O5' CMP . . . C 3 6.447 -18.855 -64.352 1 32.53 ? O5' CMP 1001 E 1 HETATM 5 C C5' CMP . . . C 3 5.209 -18.908 -63.631 1 32.18 ? C5' CMP 1001 E 1 HETATM 6 C C4' CMP . . . C 3 5.002 -17.54 -63.003 1 31.99 ? C4' CMP 1001 E 1 HETATM 7 O O4' CMP . . . C 3 3.822 -17.384 -62.216 1 32.38 ? O4' CMP 1001 E 1 HETATM 8 C C3' CMP . . . C 3 6.115 -17.272 -62.023 1 32.02 ? C3' CMP 1001 E 1 HETATM 9 O O3' CMP . . . C 3 7.3 -17.061 -62.778 1 32.27 ? O3' CMP 1001 E 1 HETATM 10 C C2' CMP . . . C 3 5.575 -16.114 -61.206 1 32.19 ? C2' CMP 1001 E 1 HETATM 11 O O2' CMP . . . C 3 5.927 -14.855 -61.787 1 32.5 ? O2' CMP 1001 E 1 HETATM 12 C C1' CMP . . . C 3 4.062 -16.332 -61.269 1 31.96 ? C1' CMP 1001 E 1 HETATM 13 N N9 CMP . . . C 3 3.496 -16.717 -59.947 1 31.5 ? N9 CMP 1001 E 1 HETATM 14 C C8 CMP . . . C 3 2.553 -16.025 -59.274 1 31.37 ? C8 CMP 1001 E 1 HETATM 15 N N7 CMP . . . C 3 2.236 -16.629 -58.098 1 30.95 ? N7 CMP 1001 E 1 HETATM 16 C C5 CMP . . . C 3 2.988 -17.741 -58.005 1 31.1 ? C5 CMP 1001 E 1 HETATM 17 C C6 CMP . . . C 3 3.158 -18.842 -57.025 1 31.04 ? C6 CMP 1001 E 1 HETATM 18 N N6 CMP . . . C 3 2.442 -18.873 -55.876 1 31.55 ? N6 CMP 1001 E 1 HETATM 19 N N1 CMP . . . C 3 4.049 -19.817 -57.312 1 30.92 ? N1 CMP 1001 E 1 HETATM 20 C C2 CMP . . . C 3 4.774 -19.808 -58.448 1 30.94 ? C2 CMP 1001 E 1 HETATM 21 N N3 CMP . . . C 3 4.673 -18.841 -59.38 1 31.01 ? N3 CMP 1001 E 1 HETATM 22 C C4 CMP . . . C 3 3.815 -17.799 -59.226 1 31.13 ? C4 CMP 1001 E 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 22 #