data_4MGV # _model_server_result.job_id c23vKNeppdLAT82xqvTrlA _model_server_result.datetime_utc '2024-12-06 02:27:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4mgv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 4MGV # _exptl.entry_id 4MGV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 299.368 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N'-(1-adamantylcarbonyl)pyridine-4-carbohydrazide" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 117.37 _cell.angle_gamma 90 _cell.entry_id 4MGV _cell.length_a 51.45 _cell.length_b 46.01 _cell.length_c 55.1 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4MGV _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -25.331391 0 48.931898 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 105 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 105 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 105 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 105 _struct_conn.ptnr2_symmetry 2_556 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.006 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C17 H21 N3 O2' _chem_comp.formula_weight 299.368 _chem_comp.id D5I _chem_comp.mon_nstd_flag . _chem_comp.name "N'-(1-adamantylcarbonyl)pyridine-4-carbohydrazide" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 D5I doub 83 n n C11 C10 D5I sing 84 n n C11 C3 D5I sing 85 n n C2 C3 D5I sing 86 n n C2 N13 D5I sing 87 n n C9 C10 D5I sing 88 n n C9 C7 D5I sing 89 n n C10 C12 D5I sing 90 n n C8 C3 D5I sing 91 n n C8 C7 D5I sing 92 n n C3 C4 D5I sing 93 n n C22 C21 D5I doub 94 n y C22 C17 D5I sing 95 n y C7 C6 D5I sing 96 n n N13 N14 D5I sing 97 n n N14 C15 D5I sing 98 n n C21 N20 D5I sing 99 n y C15 C17 D5I sing 100 n n C15 O16 D5I doub 101 n n C12 C5 D5I sing 102 n n C17 C18 D5I doub 103 n y C4 C5 D5I sing 104 n n N20 C19 D5I doub 105 n y C6 C5 D5I sing 106 n n C18 C19 D5I sing 107 n y C4 H1 D5I sing 108 n n C4 H2 D5I sing 109 n n C5 H3 D5I sing 110 n n C12 H4 D5I sing 111 n n C12 H5 D5I sing 112 n n C10 H6 D5I sing 113 n n C11 H7 D5I sing 114 n n C11 H8 D5I sing 115 n n C6 H9 D5I sing 116 n n C6 H10 D5I sing 117 n n C7 H11 D5I sing 118 n n C9 H12 D5I sing 119 n n C9 H13 D5I sing 120 n n C8 H14 D5I sing 121 n n C8 H15 D5I sing 122 n n N13 H16 D5I sing 123 n n N14 H17 D5I sing 124 n n C18 H18 D5I sing 125 n n C19 H19 D5I sing 126 n n C21 H20 D5I sing 127 n n C22 H21 D5I sing 128 n n # _atom_sites.entry_id 4MGV _atom_sites.fract_transf_matrix[1][1] 0.019436 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.01006 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021734 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020436 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 D5I A 1 201 1 D5I D5 . C 3 HOH A 1 301 1 HOH HOH . C 3 HOH A 2 302 2 HOH HOH . C 3 HOH A 3 303 3 HOH HOH . C 3 HOH A 4 304 5 HOH HOH . C 3 HOH A 5 305 6 HOH HOH . C 3 HOH A 6 306 7 HOH HOH . C 3 HOH A 7 307 8 HOH HOH . C 3 HOH A 8 308 9 HOH HOH . C 3 HOH A 9 309 10 HOH HOH . C 3 HOH A 10 310 11 HOH HOH . C 3 HOH A 11 311 12 HOH HOH . C 3 HOH A 12 312 13 HOH HOH . C 3 HOH A 13 313 14 HOH HOH . C 3 HOH A 14 314 15 HOH HOH . C 3 HOH A 15 315 16 HOH HOH . C 3 HOH A 16 316 17 HOH HOH . C 3 HOH A 17 317 19 HOH HOH . C 3 HOH A 18 318 22 HOH HOH . C 3 HOH A 19 319 23 HOH HOH . C 3 HOH A 20 320 24 HOH HOH . C 3 HOH A 21 321 25 HOH HOH . C 3 HOH A 22 322 26 HOH HOH . C 3 HOH A 23 323 27 HOH HOH . C 3 HOH A 24 324 28 HOH HOH . C 3 HOH A 25 325 31 HOH HOH . C 3 HOH A 26 326 32 HOH HOH . C 3 HOH A 27 327 34 HOH HOH . C 3 HOH A 28 328 35 HOH HOH . C 3 HOH A 29 329 36 HOH HOH . C 3 HOH A 30 330 37 HOH HOH . C 3 HOH A 31 331 38 HOH HOH . C 3 HOH A 32 332 39 HOH HOH . C 3 HOH A 33 333 40 HOH HOH . C 3 HOH A 34 334 42 HOH HOH . C 3 HOH A 35 335 43 HOH HOH . C 3 HOH A 36 336 44 HOH HOH . C 3 HOH A 37 337 45 HOH HOH . C 3 HOH A 38 338 49 HOH HOH . C 3 HOH A 39 339 53 HOH HOH . C 3 HOH A 40 340 55 HOH HOH . C 3 HOH A 41 341 56 HOH HOH . C 3 HOH A 42 342 57 HOH HOH . C 3 HOH A 43 343 60 HOH HOH . C 3 HOH A 44 344 61 HOH HOH . C 3 HOH A 45 345 62 HOH HOH . C 3 HOH A 46 346 63 HOH HOH . C 3 HOH A 47 347 64 HOH HOH . C 3 HOH A 48 348 65 HOH HOH . C 3 HOH A 49 349 66 HOH HOH . C 3 HOH A 50 350 67 HOH HOH . C 3 HOH A 51 351 68 HOH HOH . C 3 HOH A 52 352 69 HOH HOH . C 3 HOH A 53 353 73 HOH HOH . C 3 HOH A 54 354 74 HOH HOH . C 3 HOH A 55 355 76 HOH HOH . C 3 HOH A 56 356 78 HOH HOH . C 3 HOH A 57 357 79 HOH HOH . C 3 HOH A 58 358 82 HOH HOH . C 3 HOH A 59 359 83 HOH HOH . C 3 HOH A 60 360 85 HOH HOH . C 3 HOH A 61 361 87 HOH HOH . C 3 HOH A 62 362 90 HOH HOH . C 3 HOH A 63 363 92 HOH HOH . C 3 HOH A 64 364 95 HOH HOH . C 3 HOH A 65 365 100 HOH HOH . C 3 HOH A 66 366 106 HOH HOH . C 3 HOH A 67 367 109 HOH HOH . C 3 HOH A 68 368 114 HOH HOH . C 3 HOH A 69 369 117 HOH HOH . C 3 HOH A 70 370 119 HOH HOH . C 3 HOH A 71 371 122 HOH HOH . C 3 HOH A 72 372 140 HOH HOH . C 3 HOH A 73 373 141 HOH HOH . C 3 HOH A 74 374 142 HOH HOH . C 3 HOH A 75 375 143 HOH HOH . C 3 HOH A 76 376 144 HOH HOH . C 3 HOH A 77 377 145 HOH HOH . C 3 HOH A 78 378 147 HOH HOH . C 3 HOH A 79 379 148 HOH HOH . C 3 HOH A 80 380 149 HOH HOH . C 3 HOH A 81 381 150 HOH HOH . C 3 HOH A 82 382 151 HOH HOH . C 3 HOH A 83 383 152 HOH HOH . C 3 HOH A 84 384 153 HOH HOH . C 3 HOH A 85 385 154 HOH HOH . C 3 HOH A 86 386 155 HOH HOH . C 3 HOH A 87 387 157 HOH HOH . C 3 HOH A 88 388 158 HOH HOH . C 3 HOH A 89 389 159 HOH HOH . C 3 HOH A 90 390 160 HOH HOH . C 3 HOH A 91 391 161 HOH HOH . C 3 HOH A 92 392 162 HOH HOH . C 3 HOH A 93 393 163 HOH HOH . C 3 HOH A 94 394 164 HOH HOH . C 3 HOH A 95 395 165 HOH HOH . C 3 HOH A 96 396 166 HOH HOH . C 3 HOH A 97 397 167 HOH HOH . C 3 HOH A 98 398 168 HOH HOH . C 3 HOH A 99 399 169 HOH HOH . C 3 HOH A 100 400 170 HOH HOH . C 3 HOH A 101 401 171 HOH HOH . C 3 HOH A 102 402 172 HOH HOH . C 3 HOH A 103 403 174 HOH HOH . C 3 HOH A 104 404 176 HOH HOH . C 3 HOH A 105 405 177 HOH HOH . C 3 HOH A 106 406 178 HOH HOH . C 3 HOH A 107 407 179 HOH HOH . C 3 HOH A 108 408 180 HOH HOH . C 3 HOH A 109 409 181 HOH HOH . C 3 HOH A 110 410 182 HOH HOH . C 3 HOH A 111 411 183 HOH HOH . C 3 HOH A 112 412 184 HOH HOH . C 3 HOH A 113 413 185 HOH HOH . C 3 HOH A 114 414 186 HOH HOH . C 3 HOH A 115 415 187 HOH HOH . C 3 HOH A 116 416 188 HOH HOH . C 3 HOH A 117 417 189 HOH HOH . C 3 HOH A 118 418 190 HOH HOH . C 3 HOH A 119 419 191 HOH HOH . C 3 HOH A 120 420 192 HOH HOH . C 3 HOH A 121 421 193 HOH HOH . C 3 HOH A 122 422 194 HOH HOH . C 3 HOH A 123 423 195 HOH HOH . C 3 HOH A 124 424 196 HOH HOH . C 3 HOH A 125 425 197 HOH HOH . C 3 HOH A 126 426 198 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 D5I . . . B 2 -11.4 3.678 20.11 1 43 ? O1 D5I 201 A 1 HETATM 2 C C2 D5I . . . B 2 -11.206 3.518 21.308 1 49.02 ? C2 D5I 201 A 1 HETATM 3 C C3 D5I . . . B 2 -9.849 3.041 21.743 1 51.1 ? C3 D5I 201 A 1 HETATM 4 C C4 D5I . . . B 2 -9.997 2.606 23.224 1 52.51 ? C4 D5I 201 A 1 HETATM 5 C C5 D5I . . . B 2 -8.644 2.2 23.781 1 53.15 ? C5 D5I 201 A 1 HETATM 6 C C12 D5I . . . B 2 -8.162 1.039 22.909 1 52.84 ? C12 D5I 201 A 1 HETATM 7 C C10 D5I . . . B 2 -7.971 1.467 21.443 1 53.34 ? C10 D5I 201 A 1 HETATM 8 C C11 D5I . . . B 2 -9.337 1.879 20.888 1 52.01 ? C11 D5I 201 A 1 HETATM 9 C C6 D5I . . . B 2 -7.705 3.414 23.627 1 53.74 ? C6 D5I 201 A 1 HETATM 10 C C7 D5I . . . B 2 -7.484 3.842 22.164 1 51.63 ? C7 D5I 201 A 1 HETATM 11 C C9 D5I . . . B 2 -6.979 2.65 21.362 1 52.59 ? C9 D5I 201 A 1 HETATM 12 C C8 D5I . . . B 2 -8.844 4.201 21.564 1 52.45 ? C8 D5I 201 A 1 HETATM 13 N N13 D5I . . . B 2 -12.074 3.708 22.339 1 47.73 ? N13 D5I 201 A 1 HETATM 14 N N14 D5I . . . B 2 -13.421 4.197 22.358 1 48.02 ? N14 D5I 201 A 1 HETATM 15 C C15 D5I . . . B 2 -13.446 5.448 22.817 1 46.51 ? C15 D5I 201 A 1 HETATM 16 O O16 D5I . . . B 2 -12.383 5.942 23.115 1 44.77 ? O16 D5I 201 A 1 HETATM 17 C C17 D5I . . . B 2 -14.625 6.359 23.028 1 47.95 ? C17 D5I 201 A 1 HETATM 18 C C18 D5I . . . B 2 -15.451 6.216 24.143 1 49.67 ? C18 D5I 201 A 1 HETATM 19 C C19 D5I . . . B 2 -16.512 7.101 24.347 1 49.36 ? C19 D5I 201 A 1 HETATM 20 N N20 D5I . . . B 2 -16.721 8.104 23.478 1 49.36 ? N20 D5I 201 A 1 HETATM 21 C C21 D5I . . . B 2 -15.934 8.28 22.399 1 48.06 ? C21 D5I 201 A 1 HETATM 22 C C22 D5I . . . B 2 -14.865 7.422 22.156 1 48.34 ? C22 D5I 201 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 22 #