data_4MJ4 # _model_server_result.job_id 7G9Xmmn8tQi7IzAbs5Ad7g _model_server_result.datetime_utc '2024-11-01 09:40:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4mj4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":704}' # _entry.id 4MJ4 # _exptl.entry_id 4MJ4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.1 _cell.angle_gamma 90 _cell.entry_id 4MJ4 _cell.length_a 63.335 _cell.length_b 70.507 _cell.length_c 67.303 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4MJ4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 2 5 3 MAN BMA C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG C 991 NAG 2 n B NAG 2 B 2 NAG C 992 NAG 2 n B BMA 3 B 3 BMA C 993 BMA 2 n B MAN 4 B 4 MAN C 995 MAN 2 n B MAN 5 B 5 MAN C 994 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A ND2 ASN 110 A ASN 110 1_555 F C1 NAG . A NAG 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale2 A ND2 ASN 372 A ASN 372 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale3 A ND2 ASN 415 A ASN 415 1_555 G C1 NAG . A NAG 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale4 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale5 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.426 ? covale ? covale6 B O3 BMA . B BMA 3 1_555 B C1 MAN . B MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale7 B O6 BMA . B BMA 3 1_555 B C1 MAN . B MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 298 n n C1 O1 NAG sing 299 n n C1 O5 NAG sing 300 n n C1 H1 NAG sing 301 n n C2 C3 NAG sing 302 n n C2 N2 NAG sing 303 n n C2 H2 NAG sing 304 n n C3 C4 NAG sing 305 n n C3 O3 NAG sing 306 n n C3 H3 NAG sing 307 n n C4 C5 NAG sing 308 n n C4 O4 NAG sing 309 n n C4 H4 NAG sing 310 n n C5 C6 NAG sing 311 n n C5 O5 NAG sing 312 n n C5 H5 NAG sing 313 n n C6 O6 NAG sing 314 n n C6 H61 NAG sing 315 n n C6 H62 NAG sing 316 n n C7 C8 NAG sing 317 n n C7 N2 NAG sing 318 n n C7 O7 NAG doub 319 n n C8 H81 NAG sing 320 n n C8 H82 NAG sing 321 n n C8 H83 NAG sing 322 n n N2 HN2 NAG sing 323 n n O1 HO1 NAG sing 324 n n O3 HO3 NAG sing 325 n n O4 HO4 NAG sing 326 n n O6 HO6 NAG sing 327 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4MJ4 _atom_sites.fract_transf_matrix[1][1] 0.015789 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000578 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014183 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014868 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 701 1 GOL GOL . D 3 GOL A 1 702 3 GOL GOL . E 3 GOL A 1 703 4 GOL GOL . F 4 NAG A 1 704 901 NAG NAG . G 4 NAG A 1 705 951 NAG NAG . H 5 CL A 1 711 1 CL CL . I 6 HOH A 1 801 1 HOH HOH . I 6 HOH A 2 802 2 HOH HOH . I 6 HOH A 3 803 3 HOH HOH . I 6 HOH A 4 804 4 HOH HOH . I 6 HOH A 5 805 5 HOH HOH . I 6 HOH A 6 806 6 HOH HOH . I 6 HOH A 7 807 7 HOH HOH . I 6 HOH A 8 808 8 HOH HOH . I 6 HOH A 9 809 9 HOH HOH . I 6 HOH A 10 810 10 HOH HOH . I 6 HOH A 11 811 11 HOH HOH . I 6 HOH A 12 812 12 HOH HOH . I 6 HOH A 13 813 13 HOH HOH . I 6 HOH A 14 814 14 HOH HOH . I 6 HOH A 15 815 15 HOH HOH . I 6 HOH A 16 816 16 HOH HOH . I 6 HOH A 17 817 17 HOH HOH . I 6 HOH A 18 818 18 HOH HOH . I 6 HOH A 19 819 19 HOH HOH . I 6 HOH A 20 820 20 HOH HOH . I 6 HOH A 21 821 21 HOH HOH . I 6 HOH A 22 822 22 HOH HOH . I 6 HOH A 23 823 23 HOH HOH . I 6 HOH A 24 824 24 HOH HOH . I 6 HOH A 25 825 25 HOH HOH . I 6 HOH A 26 826 26 HOH HOH . I 6 HOH A 27 827 27 HOH HOH . I 6 HOH A 28 828 28 HOH HOH . I 6 HOH A 29 829 29 HOH HOH . I 6 HOH A 30 830 30 HOH HOH . I 6 HOH A 31 831 31 HOH HOH . I 6 HOH A 32 832 32 HOH HOH . I 6 HOH A 33 833 33 HOH HOH . I 6 HOH A 34 834 34 HOH HOH . I 6 HOH A 35 835 35 HOH HOH . I 6 HOH A 36 836 36 HOH HOH . I 6 HOH A 37 837 37 HOH HOH . I 6 HOH A 38 838 38 HOH HOH . I 6 HOH A 39 839 39 HOH HOH . I 6 HOH A 40 840 40 HOH HOH . I 6 HOH A 41 841 41 HOH HOH . I 6 HOH A 42 842 42 HOH HOH . I 6 HOH A 43 843 43 HOH HOH . I 6 HOH A 44 844 44 HOH HOH . I 6 HOH A 45 845 45 HOH HOH . I 6 HOH A 46 846 46 HOH HOH . I 6 HOH A 47 847 47 HOH HOH . I 6 HOH A 48 848 48 HOH HOH . I 6 HOH A 49 849 49 HOH HOH . I 6 HOH A 50 850 50 HOH HOH . I 6 HOH A 51 851 51 HOH HOH . I 6 HOH A 52 852 52 HOH HOH . I 6 HOH A 53 853 53 HOH HOH . I 6 HOH A 54 854 54 HOH HOH . I 6 HOH A 55 855 55 HOH HOH . I 6 HOH A 56 856 56 HOH HOH . I 6 HOH A 57 857 57 HOH HOH . I 6 HOH A 58 858 58 HOH HOH . I 6 HOH A 59 859 59 HOH HOH . I 6 HOH A 60 860 60 HOH HOH . I 6 HOH A 61 861 61 HOH HOH . I 6 HOH A 62 862 62 HOH HOH . I 6 HOH A 63 863 63 HOH HOH . I 6 HOH A 64 864 64 HOH HOH . I 6 HOH A 65 865 65 HOH HOH . I 6 HOH A 66 866 66 HOH HOH . I 6 HOH A 67 867 67 HOH HOH . I 6 HOH A 68 868 68 HOH HOH . I 6 HOH A 69 869 69 HOH HOH . I 6 HOH A 70 870 70 HOH HOH . I 6 HOH A 71 871 71 HOH HOH . I 6 HOH A 72 872 72 HOH HOH . I 6 HOH A 73 873 73 HOH HOH . I 6 HOH A 74 874 74 HOH HOH . I 6 HOH A 75 875 75 HOH HOH . I 6 HOH A 76 876 76 HOH HOH . I 6 HOH A 77 877 77 HOH HOH . I 6 HOH A 78 878 78 HOH HOH . I 6 HOH A 79 879 79 HOH HOH . I 6 HOH A 80 880 80 HOH HOH . I 6 HOH A 81 881 81 HOH HOH . I 6 HOH A 82 882 82 HOH HOH . I 6 HOH A 83 883 83 HOH HOH . I 6 HOH A 84 884 84 HOH HOH . I 6 HOH A 85 885 85 HOH HOH . I 6 HOH A 86 886 86 HOH HOH . I 6 HOH A 87 887 87 HOH HOH . I 6 HOH A 88 888 88 HOH HOH . I 6 HOH A 89 889 89 HOH HOH . I 6 HOH A 90 890 90 HOH HOH . I 6 HOH A 91 891 91 HOH HOH . I 6 HOH A 92 892 92 HOH HOH . I 6 HOH A 93 893 93 HOH HOH . I 6 HOH A 94 894 94 HOH HOH . I 6 HOH A 95 895 95 HOH HOH . I 6 HOH A 96 896 96 HOH HOH . I 6 HOH A 97 897 97 HOH HOH . I 6 HOH A 98 898 98 HOH HOH . I 6 HOH A 99 899 99 HOH HOH . I 6 HOH A 100 900 100 HOH HOH . I 6 HOH A 101 901 101 HOH HOH . I 6 HOH A 102 902 102 HOH HOH . I 6 HOH A 103 903 103 HOH HOH . I 6 HOH A 104 904 104 HOH HOH . I 6 HOH A 105 905 105 HOH HOH . I 6 HOH A 106 906 106 HOH HOH . I 6 HOH A 107 907 107 HOH HOH . I 6 HOH A 108 908 108 HOH HOH . I 6 HOH A 109 909 109 HOH HOH . I 6 HOH A 110 910 110 HOH HOH . I 6 HOH A 111 911 111 HOH HOH . I 6 HOH A 112 912 112 HOH HOH . I 6 HOH A 113 913 113 HOH HOH . I 6 HOH A 114 914 115 HOH HOH . I 6 HOH A 115 915 116 HOH HOH . I 6 HOH A 116 916 117 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . F 4 85.784 3.098 64.981 1 51.44 ? C1 NAG 704 A 1 HETATM 2 C C2 NAG . . . F 4 85.672 3.962 63.722 1 56.67 ? C2 NAG 704 A 1 HETATM 3 C C3 NAG . . . F 4 84.912 3.219 62.623 1 57.65 ? C3 NAG 704 A 1 HETATM 4 C C4 NAG . . . F 4 85.494 1.826 62.39 1 56.72 ? C4 NAG 704 A 1 HETATM 5 C C5 NAG . . . F 4 85.587 1.07 63.716 1 55.74 ? C5 NAG 704 A 1 HETATM 6 C C6 NAG . . . F 4 86.267 -0.284 63.543 1 56.09 ? C6 NAG 704 A 1 HETATM 7 C C7 NAG . . . F 4 85.559 6.407 63.885 1 60.68 ? C7 NAG 704 A 1 HETATM 8 C C8 NAG . . . F 4 84.706 7.584 64.262 1 59.79 ? C8 NAG 704 A 1 HETATM 9 N N2 NAG . . . F 4 84.995 5.209 64.035 1 59.97 ? N2 NAG 704 A 1 HETATM 10 O O3 NAG . . . F 4 84.946 3.96 61.423 1 59.71 ? O3 NAG 704 A 1 HETATM 11 O O4 NAG . . . F 4 84.667 1.124 61.492 1 57.32 ? O4 NAG 704 A 1 HETATM 12 O O5 NAG . . . F 4 86.325 1.83 64.656 1 53.79 ? O5 NAG 704 A 1 HETATM 13 O O6 NAG . . . F 4 85.953 -1.101 64.648 1 56.74 ? O6 NAG 704 A 1 HETATM 14 O O7 NAG . . . F 4 86.705 6.575 63.465 1 61.63 ? O7 NAG 704 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #