data_4MK0
#
_model_server_result.job_id            5XBsF-OE5Wo6qZ9k6rWf_g 
_model_server_result.datetime_utc      '2024-11-30 07:15:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4mk0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":701}' 
#
_entry.id    4MK0 
#
_exptl.entry_id    4MK0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4MK0 
_cell.length_a            61.222 
_cell.length_b            240.973 
_cell.length_c            212.083 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4MK0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 176 n n 
C1 C2 GOL sing 177 n n 
C1 H11 GOL sing 178 n n 
C1 H12 GOL sing 179 n n 
O1 HO1 GOL sing 180 n n 
C2 O2 GOL sing 181 n n 
C2 C3 GOL sing 182 n n 
C2 H2 GOL sing 183 n n 
O2 HO2 GOL sing 184 n n 
C3 O3 GOL sing 185 n n 
C3 H31 GOL sing 186 n n 
C3 H32 GOL sing 187 n n 
O3 HO3 GOL sing 188 n n 
#
_atom_sites.entry_id                     4MK0 
_atom_sites.fract_transf_matrix[1][1]    0.016334 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00415 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004715 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 GOL A 1 701 23 GOL GOL . 
E 5 29X A 1 702 1 29X XXP . 
F 6 HOH A 1 801 1 HOH HOH . 
F 6 HOH A 2 802 2 HOH HOH . 
F 6 HOH A 3 803 3 HOH HOH . 
F 6 HOH A 4 804 4 HOH HOH . 
F 6 HOH A 5 805 5 HOH HOH . 
F 6 HOH A 6 806 6 HOH HOH . 
F 6 HOH A 7 807 7 HOH HOH . 
F 6 HOH A 8 808 8 HOH HOH . 
F 6 HOH A 9 809 9 HOH HOH . 
F 6 HOH A 10 810 10 HOH HOH . 
F 6 HOH A 11 811 11 HOH HOH . 
F 6 HOH A 12 812 12 HOH HOH . 
F 6 HOH A 13 813 15 HOH HOH . 
F 6 HOH A 14 814 22 HOH HOH . 
F 6 HOH A 15 815 25 HOH HOH . 
F 6 HOH A 16 816 26 HOH HOH . 
F 6 HOH A 17 817 27 HOH HOH . 
F 6 HOH A 18 818 1 HOH HOH . 
F 6 HOH A 19 819 2 HOH HOH . 
F 6 HOH A 20 820 3 HOH HOH . 
F 6 HOH A 21 821 4 HOH HOH . 
F 6 HOH A 22 822 5 HOH HOH . 
F 6 HOH A 23 823 6 HOH HOH . 
F 6 HOH A 24 824 7 HOH HOH . 
F 6 HOH A 25 825 8 HOH HOH . 
F 6 HOH A 26 826 9 HOH HOH . 
F 6 HOH A 27 827 10 HOH HOH . 
F 6 HOH A 28 828 13 HOH HOH . 
F 6 HOH A 29 829 14 HOH HOH . 
F 6 HOH A 30 830 15 HOH HOH . 
F 6 HOH A 31 831 17 HOH HOH . 
F 6 HOH A 32 832 18 HOH HOH . 
F 6 HOH A 33 833 19 HOH HOH . 
F 6 HOH A 34 834 20 HOH HOH . 
F 6 HOH A 35 835 1 HOH HOH . 
F 6 HOH A 36 836 3 HOH HOH . 
F 6 HOH A 37 837 4 HOH HOH . 
F 6 HOH A 38 838 5 HOH HOH . 
F 6 HOH A 39 839 6 HOH HOH . 
F 6 HOH A 40 840 7 HOH HOH . 
F 6 HOH A 41 841 8 HOH HOH . 
F 6 HOH A 42 842 12 HOH HOH . 
F 6 HOH A 43 843 13 HOH HOH . 
F 6 HOH A 44 844 16 HOH HOH . 
F 6 HOH A 45 845 18 HOH HOH . 
F 6 HOH A 46 846 20 HOH HOH . 
F 6 HOH A 47 847 2 HOH HOH . 
F 6 HOH A 48 848 4 HOH HOH . 
F 6 HOH A 49 849 5 HOH HOH . 
F 6 HOH A 50 850 6 HOH HOH . 
F 6 HOH A 51 851 11 HOH HOH . 
F 6 HOH A 52 852 12 HOH HOH . 
F 6 HOH A 53 853 15 HOH HOH . 
F 6 HOH A 54 854 18 HOH HOH . 
F 6 HOH A 55 855 19 HOH HOH . 
F 6 HOH A 56 856 20 HOH HOH . 
F 6 HOH A 57 857 21 HOH HOH . 
F 6 HOH A 58 858 29 HOH HOH . 
F 6 HOH A 59 859 62 HOH HOH . 
G 6 HOH B 1 401 1 HOH HOH . 
G 6 HOH B 2 402 7 HOH HOH . 
G 6 HOH B 3 403 8 HOH HOH . 
G 6 HOH B 4 404 9 HOH HOH . 
G 6 HOH B 5 405 10 HOH HOH . 
G 6 HOH B 6 406 13 HOH HOH . 
G 6 HOH B 7 407 1 HOH HOH . 
G 6 HOH B 8 408 3 HOH HOH . 
G 6 HOH B 9 409 4 HOH HOH . 
G 6 HOH B 10 410 5 HOH HOH . 
G 6 HOH B 11 411 6 HOH HOH . 
G 6 HOH B 12 412 7 HOH HOH . 
G 6 HOH B 13 413 8 HOH HOH . 
G 6 HOH B 14 414 9 HOH HOH . 
G 6 HOH B 15 415 10 HOH HOH . 
G 6 HOH B 16 416 11 HOH HOH . 
G 6 HOH B 17 417 12 HOH HOH . 
G 6 HOH B 18 418 13 HOH HOH . 
G 6 HOH B 19 419 14 HOH HOH . 
G 6 HOH B 20 420 15 HOH HOH . 
G 6 HOH B 21 421 16 HOH HOH . 
G 6 HOH B 22 422 17 HOH HOH . 
G 6 HOH B 23 423 18 HOH HOH . 
G 6 HOH B 24 424 19 HOH HOH . 
G 6 HOH B 25 425 20 HOH HOH . 
G 6 HOH B 26 426 21 HOH HOH . 
G 6 HOH B 27 427 22 HOH HOH . 
G 6 HOH B 28 428 23 HOH HOH . 
G 6 HOH B 29 429 24 HOH HOH . 
G 6 HOH B 30 430 26 HOH HOH . 
G 6 HOH B 31 431 27 HOH HOH . 
G 6 HOH B 32 432 28 HOH HOH . 
G 6 HOH B 33 433 30 HOH HOH . 
G 6 HOH B 34 434 31 HOH HOH . 
G 6 HOH B 35 435 32 HOH HOH . 
G 6 HOH B 36 436 33 HOH HOH . 
G 6 HOH B 37 437 34 HOH HOH . 
G 6 HOH B 38 438 35 HOH HOH . 
G 6 HOH B 39 439 36 HOH HOH . 
G 6 HOH B 40 440 37 HOH HOH . 
G 6 HOH B 41 441 38 HOH HOH . 
G 6 HOH B 42 442 39 HOH HOH . 
G 6 HOH B 43 443 40 HOH HOH . 
G 6 HOH B 44 444 41 HOH HOH . 
G 6 HOH B 45 445 42 HOH HOH . 
G 6 HOH B 46 446 43 HOH HOH . 
G 6 HOH B 47 447 44 HOH HOH . 
G 6 HOH B 48 448 45 HOH HOH . 
G 6 HOH B 49 449 46 HOH HOH . 
G 6 HOH B 50 450 47 HOH HOH . 
G 6 HOH B 51 451 49 HOH HOH . 
G 6 HOH B 52 452 50 HOH HOH . 
G 6 HOH B 53 453 53 HOH HOH . 
G 6 HOH B 54 454 54 HOH HOH . 
G 6 HOH B 55 455 56 HOH HOH . 
G 6 HOH B 56 456 57 HOH HOH . 
G 6 HOH B 57 457 58 HOH HOH . 
G 6 HOH B 58 458 59 HOH HOH . 
G 6 HOH B 59 459 60 HOH HOH . 
G 6 HOH B 60 460 61 HOH HOH . 
G 6 HOH B 61 461 63 HOH HOH . 
G 6 HOH B 62 462 64 HOH HOH . 
G 6 HOH B 63 463 65 HOH HOH . 
G 6 HOH B 64 464 66 HOH HOH . 
G 6 HOH B 65 465 67 HOH HOH . 
G 6 HOH B 66 466 71 HOH HOH . 
G 6 HOH B 67 467 73 HOH HOH . 
G 6 HOH B 68 468 76 HOH HOH . 
G 6 HOH B 69 469 77 HOH HOH . 
H 6 HOH G 1 101 2 HOH HOH . 
H 6 HOH G 2 102 52 HOH HOH . 
H 6 HOH G 3 103 75 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 4 -25.621 -21.537 31.314 1 52.78 ? C1 GOL 701 A 1 
HETATM 2 O O1 GOL . . . D 4 -25.705 -21.442 29.862 1 47.31 ? O1 GOL 701 A 1 
HETATM 3 C C2 GOL . . . D 4 -24.15 -21.37 31.792 1 51.33 ? C2 GOL 701 A 1 
HETATM 4 O O2 GOL . . . D 4 -23.893 -19.987 32.202 1 39.57 ? O2 GOL 701 A 1 
HETATM 5 C C3 GOL . . . D 4 -23.795 -22.372 32.928 1 52.13 ? C3 GOL 701 A 1 
HETATM 6 O O3 GOL . . . D 4 -22.363 -22.339 33.226 1 50.21 ? O3 GOL 701 A 1 
#
_model_server_stats.io_time_ms              83 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#