data_4MK0 # _model_server_result.job_id VpV8CM3byb-AEJoXd6hlMQ _model_server_result.datetime_utc '2024-11-14 09:53:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4mk0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":702}' # _entry.id 4MK0 # _exptl.entry_id 4MK0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 338.375 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-{[(3S,4R)-4-(4-fluorophenyl)piperidin-3-yl]methoxy}-1H-isoindol-1-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4MK0 _cell.length_a 61.222 _cell.length_b 240.973 _cell.length_c 212.083 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4MK0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H19 F N2 O2' _chem_comp.formula_weight 338.375 _chem_comp.id 29X _chem_comp.mon_nstd_flag . _chem_comp.name 5-{[(3S,4R)-4-(4-fluorophenyl)piperidin-3-yl]methoxy}-1H-isoindol-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C3 C2 29X doub 1 n y C3 C4 29X sing 2 n y F21 C4 29X sing 3 n n C2 C1 29X sing 4 n y C19 C20 29X doub 5 n y C19 C18 29X sing 6 n y C4 C5 29X doub 7 n y O25 C22 29X doub 8 n n C20 C15 29X sing 9 n y C18 C22 29X sing 10 n n C18 C17 29X doub 11 n y C22 N23 29X sing 12 n n C1 C7 29X sing 13 n n C1 C6 29X doub 14 n y C15 O14 29X sing 15 n n C15 C16 29X doub 16 n y C5 C6 29X sing 17 n y O14 C13 29X sing 18 n n C7 C8 29X sing 19 n n C7 C12 29X sing 20 n n C8 C9 29X sing 21 n n C17 C16 29X sing 22 n y C17 C24 29X sing 23 n n N23 C24 29X doub 24 n n C9 N10 29X sing 25 n n C13 C12 29X sing 26 n n C12 C11 29X sing 27 n n C11 N10 29X sing 28 n n C5 H1 29X sing 29 n n C6 H2 29X sing 30 n n C3 H3 29X sing 31 n n C2 H4 29X sing 32 n n C7 H5 29X sing 33 n n C8 H6 29X sing 34 n n C8 H7 29X sing 35 n n C9 H8 29X sing 36 n n C9 H9 29X sing 37 n n N10 H10 29X sing 38 n n C11 H12 29X sing 39 n n C11 H13 29X sing 40 n n C12 H14 29X sing 41 n n C13 H15 29X sing 42 n n C13 H16 29X sing 43 n n C16 H17 29X sing 44 n n C20 H18 29X sing 45 n n C19 H19 29X sing 46 n n C24 H20 29X sing 47 n n # _atom_sites.entry_id 4MK0 _atom_sites.fract_transf_matrix[1][1] 0.016334 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00415 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004715 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 GOL A 1 701 23 GOL GOL . E 5 29X A 1 702 1 29X XXP . F 6 HOH A 1 801 1 HOH HOH . F 6 HOH A 2 802 2 HOH HOH . F 6 HOH A 3 803 3 HOH HOH . F 6 HOH A 4 804 4 HOH HOH . F 6 HOH A 5 805 5 HOH HOH . F 6 HOH A 6 806 6 HOH HOH . F 6 HOH A 7 807 7 HOH HOH . F 6 HOH A 8 808 8 HOH HOH . F 6 HOH A 9 809 9 HOH HOH . F 6 HOH A 10 810 10 HOH HOH . F 6 HOH A 11 811 11 HOH HOH . F 6 HOH A 12 812 12 HOH HOH . F 6 HOH A 13 813 15 HOH HOH . F 6 HOH A 14 814 22 HOH HOH . F 6 HOH A 15 815 25 HOH HOH . F 6 HOH A 16 816 26 HOH HOH . F 6 HOH A 17 817 27 HOH HOH . F 6 HOH A 18 818 1 HOH HOH . F 6 HOH A 19 819 2 HOH HOH . F 6 HOH A 20 820 3 HOH HOH . F 6 HOH A 21 821 4 HOH HOH . F 6 HOH A 22 822 5 HOH HOH . F 6 HOH A 23 823 6 HOH HOH . F 6 HOH A 24 824 7 HOH HOH . F 6 HOH A 25 825 8 HOH HOH . F 6 HOH A 26 826 9 HOH HOH . F 6 HOH A 27 827 10 HOH HOH . F 6 HOH A 28 828 13 HOH HOH . F 6 HOH A 29 829 14 HOH HOH . F 6 HOH A 30 830 15 HOH HOH . F 6 HOH A 31 831 17 HOH HOH . F 6 HOH A 32 832 18 HOH HOH . F 6 HOH A 33 833 19 HOH HOH . F 6 HOH A 34 834 20 HOH HOH . F 6 HOH A 35 835 1 HOH HOH . F 6 HOH A 36 836 3 HOH HOH . F 6 HOH A 37 837 4 HOH HOH . F 6 HOH A 38 838 5 HOH HOH . F 6 HOH A 39 839 6 HOH HOH . F 6 HOH A 40 840 7 HOH HOH . F 6 HOH A 41 841 8 HOH HOH . F 6 HOH A 42 842 12 HOH HOH . F 6 HOH A 43 843 13 HOH HOH . F 6 HOH A 44 844 16 HOH HOH . F 6 HOH A 45 845 18 HOH HOH . F 6 HOH A 46 846 20 HOH HOH . F 6 HOH A 47 847 2 HOH HOH . F 6 HOH A 48 848 4 HOH HOH . F 6 HOH A 49 849 5 HOH HOH . F 6 HOH A 50 850 6 HOH HOH . F 6 HOH A 51 851 11 HOH HOH . F 6 HOH A 52 852 12 HOH HOH . F 6 HOH A 53 853 15 HOH HOH . F 6 HOH A 54 854 18 HOH HOH . F 6 HOH A 55 855 19 HOH HOH . F 6 HOH A 56 856 20 HOH HOH . F 6 HOH A 57 857 21 HOH HOH . F 6 HOH A 58 858 29 HOH HOH . F 6 HOH A 59 859 62 HOH HOH . G 6 HOH B 1 401 1 HOH HOH . G 6 HOH B 2 402 7 HOH HOH . G 6 HOH B 3 403 8 HOH HOH . G 6 HOH B 4 404 9 HOH HOH . G 6 HOH B 5 405 10 HOH HOH . G 6 HOH B 6 406 13 HOH HOH . G 6 HOH B 7 407 1 HOH HOH . G 6 HOH B 8 408 3 HOH HOH . G 6 HOH B 9 409 4 HOH HOH . G 6 HOH B 10 410 5 HOH HOH . G 6 HOH B 11 411 6 HOH HOH . G 6 HOH B 12 412 7 HOH HOH . G 6 HOH B 13 413 8 HOH HOH . G 6 HOH B 14 414 9 HOH HOH . G 6 HOH B 15 415 10 HOH HOH . G 6 HOH B 16 416 11 HOH HOH . G 6 HOH B 17 417 12 HOH HOH . G 6 HOH B 18 418 13 HOH HOH . G 6 HOH B 19 419 14 HOH HOH . G 6 HOH B 20 420 15 HOH HOH . G 6 HOH B 21 421 16 HOH HOH . G 6 HOH B 22 422 17 HOH HOH . G 6 HOH B 23 423 18 HOH HOH . G 6 HOH B 24 424 19 HOH HOH . G 6 HOH B 25 425 20 HOH HOH . G 6 HOH B 26 426 21 HOH HOH . G 6 HOH B 27 427 22 HOH HOH . G 6 HOH B 28 428 23 HOH HOH . G 6 HOH B 29 429 24 HOH HOH . G 6 HOH B 30 430 26 HOH HOH . G 6 HOH B 31 431 27 HOH HOH . G 6 HOH B 32 432 28 HOH HOH . G 6 HOH B 33 433 30 HOH HOH . G 6 HOH B 34 434 31 HOH HOH . G 6 HOH B 35 435 32 HOH HOH . G 6 HOH B 36 436 33 HOH HOH . G 6 HOH B 37 437 34 HOH HOH . G 6 HOH B 38 438 35 HOH HOH . G 6 HOH B 39 439 36 HOH HOH . G 6 HOH B 40 440 37 HOH HOH . G 6 HOH B 41 441 38 HOH HOH . G 6 HOH B 42 442 39 HOH HOH . G 6 HOH B 43 443 40 HOH HOH . G 6 HOH B 44 444 41 HOH HOH . G 6 HOH B 45 445 42 HOH HOH . G 6 HOH B 46 446 43 HOH HOH . G 6 HOH B 47 447 44 HOH HOH . G 6 HOH B 48 448 45 HOH HOH . G 6 HOH B 49 449 46 HOH HOH . G 6 HOH B 50 450 47 HOH HOH . G 6 HOH B 51 451 49 HOH HOH . G 6 HOH B 52 452 50 HOH HOH . G 6 HOH B 53 453 53 HOH HOH . G 6 HOH B 54 454 54 HOH HOH . G 6 HOH B 55 455 56 HOH HOH . G 6 HOH B 56 456 57 HOH HOH . G 6 HOH B 57 457 58 HOH HOH . G 6 HOH B 58 458 59 HOH HOH . G 6 HOH B 59 459 60 HOH HOH . G 6 HOH B 60 460 61 HOH HOH . G 6 HOH B 61 461 63 HOH HOH . G 6 HOH B 62 462 64 HOH HOH . G 6 HOH B 63 463 65 HOH HOH . G 6 HOH B 64 464 66 HOH HOH . G 6 HOH B 65 465 67 HOH HOH . G 6 HOH B 66 466 71 HOH HOH . G 6 HOH B 67 467 73 HOH HOH . G 6 HOH B 68 468 76 HOH HOH . G 6 HOH B 69 469 77 HOH HOH . H 6 HOH G 1 101 2 HOH HOH . H 6 HOH G 2 102 52 HOH HOH . H 6 HOH G 3 103 75 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 F F21 29X . . . E 5 -15.21 24.668 15.839 1 84.54 ? F21 29X 702 A 1 HETATM 2 C C4 29X . . . E 5 -15.771 25.803 16.289 1 84.58 ? C4 29X 702 A 1 HETATM 3 C C5 29X . . . E 5 -15.443 26.264 17.556 1 86.38 ? C5 29X 702 A 1 HETATM 4 C C6 29X . . . E 5 -16.018 27.439 18.035 1 88.63 ? C6 29X 702 A 1 HETATM 5 C C3 29X . . . E 5 -16.676 26.515 15.506 1 84.69 ? C3 29X 702 A 1 HETATM 6 C C2 29X . . . E 5 -17.251 27.695 15.984 1 87.34 ? C2 29X 702 A 1 HETATM 7 C C1 29X . . . E 5 -16.924 28.167 17.259 1 88.84 ? C1 29X 702 A 1 HETATM 8 C C7 29X . . . E 5 -17.53 29.428 17.781 1 91.86 ? C7 29X 702 A 1 HETATM 9 C C8 29X . . . E 5 -16.448 30.5 17.958 1 99.21 ? C8 29X 702 A 1 HETATM 10 C C9 29X . . . E 5 -16.972 31.787 18.59 1 102.13 ? C9 29X 702 A 1 HETATM 11 N N10 29X . . . E 5 -17.792 31.5 19.745 1 98.14 ? N10 29X 702 A 1 HETATM 12 C C11 29X . . . E 5 -18.829 30.485 19.658 1 92.41 ? C11 29X 702 A 1 HETATM 13 C C12 29X . . . E 5 -18.276 29.181 19.092 1 87.52 ? C12 29X 702 A 1 HETATM 14 C C13 29X . . . E 5 -19.41 28.179 18.919 1 80.59 ? C13 29X 702 A 1 HETATM 15 O O14 29X . . . E 5 -20.071 28.3 17.649 1 78.72 ? O14 29X 702 A 1 HETATM 16 C C15 29X . . . E 5 -21.276 27.671 17.437 1 72.68 ? C15 29X 702 A 1 HETATM 17 C C16 29X . . . E 5 -21.649 26.563 18.207 1 66.62 ? C16 29X 702 A 1 HETATM 18 C C20 29X . . . E 5 -22.137 28.151 16.445 1 73.78 ? C20 29X 702 A 1 HETATM 19 C C19 29X . . . E 5 -23.371 27.534 16.212 1 70.2 ? C19 29X 702 A 1 HETATM 20 C C18 29X . . . E 5 -23.717 26.445 16.994 1 65.15 ? C18 29X 702 A 1 HETATM 21 C C22 29X . . . E 5 -24.884 25.52 17.101 1 62.41 ? C22 29X 702 A 1 HETATM 22 O O25 29X . . . E 5 -25.942 25.568 16.378 1 63.22 ? O25 29X 702 A 1 HETATM 23 C C17 29X . . . E 5 -22.876 25.966 17.97 1 63.78 ? C17 29X 702 A 1 HETATM 24 C C24 29X . . . E 5 -23.41 24.818 18.691 1 60.11 ? C24 29X 702 A 1 HETATM 25 N N23 29X . . . E 5 -24.717 24.6 18.057 1 58.94 ? N23 29X 702 A 1 # _model_server_stats.io_time_ms 119 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 25 #