data_4MKC # _model_server_result.job_id 0Wq8B_N-MVsDhg5QFQ5GXw _model_server_result.datetime_utc '2025-02-05 13:00:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4mkc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1503}' # _entry.id 4MKC # _exptl.entry_id 4MKC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 558.135 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-chloro-N~2~-[5-methyl-4-(piperidin-4-yl)-2-(propan-2-yloxy)phenyl]-N~4~-[2-(propan-2-ylsulfonyl)phenyl]pyrimidine-2,4-diamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4MKC _cell.length_a 51.64 _cell.length_b 57.65 _cell.length_c 105.99 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4MKC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C28 H36 Cl N5 O3 S' _chem_comp.formula_weight 558.135 _chem_comp.id 4MK _chem_comp.mon_nstd_flag . _chem_comp.name 5-chloro-N~2~-[5-methyl-4-(piperidin-4-yl)-2-(propan-2-yloxy)phenyl]-N~4~-[2-(propan-2-ylsulfonyl)phenyl]pyrimidine-2,4-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Ceritinib;LDK378 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 4MK sing 1 n n C2 C3 4MK sing 2 n n C2 O4 4MK sing 3 n n O4 C5 4MK sing 4 n n C5 C6 4MK doub 5 n y C5 C17 4MK sing 6 n y C6 C7 4MK sing 7 n y C7 C8 4MK sing 8 n n C7 C14 4MK doub 9 n y C8 C9 4MK sing 10 n n C8 C13 4MK sing 11 n n C9 C10 4MK sing 12 n n C10 N11 4MK sing 13 n n N11 C12 4MK sing 14 n n C12 C13 4MK sing 15 n n C14 C15 4MK sing 16 n n C14 C16 4MK sing 17 n y C16 C17 4MK doub 18 n y C17 N18 4MK sing 19 n n N18 C19 4MK sing 20 n n C19 N20 4MK doub 21 n y C19 N38 4MK sing 22 n y N20 C21 4MK sing 23 n y C21 C22 4MK doub 24 n y C22 CL1 4MK sing 25 n n C22 C24 4MK sing 26 n y C24 N25 4MK sing 27 n n C24 N38 4MK doub 28 n y N25 C26 4MK sing 29 n n C26 C27 4MK doub 30 n y C26 C31 4MK sing 31 n y C27 C28 4MK sing 32 n y C28 C29 4MK doub 33 n y C29 C30 4MK sing 34 n y C30 C31 4MK doub 35 n y C31 S32 4MK sing 36 n n S32 O33 4MK doub 37 n n S32 O34 4MK doub 38 n n S32 C35 4MK sing 39 n n C35 C36 4MK sing 40 n n C35 C37 4MK sing 41 n n C1 H1 4MK sing 42 n n C1 H1A 4MK sing 43 n n C1 H1B 4MK sing 44 n n C2 H2 4MK sing 45 n n C3 H3 4MK sing 46 n n C3 H3A 4MK sing 47 n n C3 H3B 4MK sing 48 n n C6 H6 4MK sing 49 n n C8 H8 4MK sing 50 n n C9 H9 4MK sing 51 n n C9 H9A 4MK sing 52 n n C10 H10 4MK sing 53 n n C10 H10A 4MK sing 54 n n N11 HN11 4MK sing 55 n n C12 H12 4MK sing 56 n n C12 H12A 4MK sing 57 n n C13 H13 4MK sing 58 n n C13 H13A 4MK sing 59 n n C15 H15 4MK sing 60 n n C15 H15A 4MK sing 61 n n C15 H15B 4MK sing 62 n n C16 H16 4MK sing 63 n n N18 HN18 4MK sing 64 n n C21 H21 4MK sing 65 n n N25 HN25 4MK sing 66 n n C27 H27 4MK sing 67 n n C28 H28 4MK sing 68 n n C29 H29 4MK sing 69 n n C30 H30 4MK sing 70 n n C35 H35 4MK sing 71 n n C36 H36 4MK sing 72 n n C36 H36A 4MK sing 73 n n C36 H36B 4MK sing 74 n n C37 H37 4MK sing 75 n n C37 H37A 4MK sing 76 n n C37 H37B 4MK sing 77 n n # _atom_sites.entry_id 4MKC _atom_sites.fract_transf_matrix[1][1] 0.019365 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017346 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009435 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 1501 1 GOL GOL . C 2 GOL A 1 1502 1 GOL GOL . D 3 4MK A 1 1503 1 4MK LI1 . E 4 HOH A 1 1601 1 HOH HOH . E 4 HOH A 2 1602 2 HOH HOH . E 4 HOH A 3 1603 3 HOH HOH . E 4 HOH A 4 1604 4 HOH HOH . E 4 HOH A 5 1605 5 HOH HOH . E 4 HOH A 6 1606 6 HOH HOH . E 4 HOH A 7 1607 7 HOH HOH . E 4 HOH A 8 1608 8 HOH HOH . E 4 HOH A 9 1609 9 HOH HOH . E 4 HOH A 10 1610 10 HOH HOH . E 4 HOH A 11 1611 11 HOH HOH . E 4 HOH A 12 1612 12 HOH HOH . E 4 HOH A 13 1613 13 HOH HOH . E 4 HOH A 14 1614 14 HOH HOH . E 4 HOH A 15 1615 15 HOH HOH . E 4 HOH A 16 1616 16 HOH HOH . E 4 HOH A 17 1617 17 HOH HOH . E 4 HOH A 18 1618 18 HOH HOH . E 4 HOH A 19 1619 19 HOH HOH . E 4 HOH A 20 1620 20 HOH HOH . E 4 HOH A 21 1621 21 HOH HOH . E 4 HOH A 22 1622 22 HOH HOH . E 4 HOH A 23 1623 23 HOH HOH . E 4 HOH A 24 1624 24 HOH HOH . E 4 HOH A 25 1625 25 HOH HOH . E 4 HOH A 26 1626 26 HOH HOH . E 4 HOH A 27 1627 27 HOH HOH . E 4 HOH A 28 1628 28 HOH HOH . E 4 HOH A 29 1629 29 HOH HOH . E 4 HOH A 30 1630 30 HOH HOH . E 4 HOH A 31 1631 31 HOH HOH . E 4 HOH A 32 1632 32 HOH HOH . E 4 HOH A 33 1633 33 HOH HOH . E 4 HOH A 34 1634 34 HOH HOH . E 4 HOH A 35 1635 35 HOH HOH . E 4 HOH A 36 1636 36 HOH HOH . E 4 HOH A 37 1637 37 HOH HOH . E 4 HOH A 38 1638 38 HOH HOH . E 4 HOH A 39 1639 39 HOH HOH . E 4 HOH A 40 1640 40 HOH HOH . E 4 HOH A 41 1641 41 HOH HOH . E 4 HOH A 42 1642 42 HOH HOH . E 4 HOH A 43 1643 43 HOH HOH . E 4 HOH A 44 1644 44 HOH HOH . E 4 HOH A 45 1645 45 HOH HOH . E 4 HOH A 46 1646 46 HOH HOH . E 4 HOH A 47 1647 47 HOH HOH . E 4 HOH A 48 1648 48 HOH HOH . E 4 HOH A 49 1649 49 HOH HOH . E 4 HOH A 50 1650 50 HOH HOH . E 4 HOH A 51 1651 51 HOH HOH . E 4 HOH A 52 1652 52 HOH HOH . E 4 HOH A 53 1653 53 HOH HOH . E 4 HOH A 54 1654 54 HOH HOH . E 4 HOH A 55 1655 55 HOH HOH . E 4 HOH A 56 1656 56 HOH HOH . E 4 HOH A 57 1657 57 HOH HOH . E 4 HOH A 58 1658 58 HOH HOH . E 4 HOH A 59 1659 59 HOH HOH . E 4 HOH A 60 1660 60 HOH HOH . E 4 HOH A 61 1661 61 HOH HOH . E 4 HOH A 62 1662 62 HOH HOH . E 4 HOH A 63 1663 63 HOH HOH . E 4 HOH A 64 1664 64 HOH HOH . E 4 HOH A 65 1665 65 HOH HOH . E 4 HOH A 66 1666 66 HOH HOH . E 4 HOH A 67 1667 67 HOH HOH . E 4 HOH A 68 1668 68 HOH HOH . E 4 HOH A 69 1669 69 HOH HOH . E 4 HOH A 70 1670 70 HOH HOH . E 4 HOH A 71 1671 71 HOH HOH . E 4 HOH A 72 1672 72 HOH HOH . E 4 HOH A 73 1673 73 HOH HOH . E 4 HOH A 74 1674 74 HOH HOH . E 4 HOH A 75 1675 75 HOH HOH . E 4 HOH A 76 1676 76 HOH HOH . E 4 HOH A 77 1677 77 HOH HOH . E 4 HOH A 78 1678 78 HOH HOH . E 4 HOH A 79 1679 79 HOH HOH . E 4 HOH A 80 1680 80 HOH HOH . E 4 HOH A 81 1681 81 HOH HOH . E 4 HOH A 82 1682 82 HOH HOH . E 4 HOH A 83 1683 83 HOH HOH . E 4 HOH A 84 1684 84 HOH HOH . E 4 HOH A 85 1685 85 HOH HOH . E 4 HOH A 86 1686 86 HOH HOH . E 4 HOH A 87 1687 87 HOH HOH . E 4 HOH A 88 1688 88 HOH HOH . E 4 HOH A 89 1689 89 HOH HOH . E 4 HOH A 90 1690 90 HOH HOH . E 4 HOH A 91 1691 91 HOH HOH . E 4 HOH A 92 1692 92 HOH HOH . E 4 HOH A 93 1693 93 HOH HOH . E 4 HOH A 94 1694 94 HOH HOH . E 4 HOH A 95 1695 95 HOH HOH . E 4 HOH A 96 1696 96 HOH HOH . E 4 HOH A 97 1697 97 HOH HOH . E 4 HOH A 98 1698 98 HOH HOH . E 4 HOH A 99 1699 99 HOH HOH . E 4 HOH A 100 1700 100 HOH HOH . E 4 HOH A 101 1701 101 HOH HOH . E 4 HOH A 102 1702 102 HOH HOH . E 4 HOH A 103 1703 103 HOH HOH . E 4 HOH A 104 1704 104 HOH HOH . E 4 HOH A 105 1705 105 HOH HOH . E 4 HOH A 106 1706 106 HOH HOH . E 4 HOH A 107 1707 107 HOH HOH . E 4 HOH A 108 1708 108 HOH HOH . E 4 HOH A 109 1709 109 HOH HOH . E 4 HOH A 110 1710 110 HOH HOH . E 4 HOH A 111 1711 111 HOH HOH . E 4 HOH A 112 1712 112 HOH HOH . E 4 HOH A 113 1713 113 HOH HOH . E 4 HOH A 114 1714 114 HOH HOH . E 4 HOH A 115 1715 115 HOH HOH . E 4 HOH A 116 1716 116 HOH HOH . E 4 HOH A 117 1717 117 HOH HOH . E 4 HOH A 118 1718 118 HOH HOH . E 4 HOH A 119 1719 119 HOH HOH . E 4 HOH A 120 1720 120 HOH HOH . E 4 HOH A 121 1721 121 HOH HOH . E 4 HOH A 122 1722 122 HOH HOH . E 4 HOH A 123 1723 123 HOH HOH . E 4 HOH A 124 1724 124 HOH HOH . E 4 HOH A 125 1725 125 HOH HOH . E 4 HOH A 126 1726 126 HOH HOH . E 4 HOH A 127 1727 127 HOH HOH . E 4 HOH A 128 1728 128 HOH HOH . E 4 HOH A 129 1729 129 HOH HOH . E 4 HOH A 130 1730 130 HOH HOH . E 4 HOH A 131 1731 131 HOH HOH . E 4 HOH A 132 1732 132 HOH HOH . E 4 HOH A 133 1733 133 HOH HOH . E 4 HOH A 134 1734 134 HOH HOH . E 4 HOH A 135 1735 135 HOH HOH . E 4 HOH A 136 1736 136 HOH HOH . E 4 HOH A 137 1737 137 HOH HOH . E 4 HOH A 138 1738 138 HOH HOH . E 4 HOH A 139 1739 139 HOH HOH . E 4 HOH A 140 1740 140 HOH HOH . E 4 HOH A 141 1741 141 HOH HOH . E 4 HOH A 142 1742 142 HOH HOH . E 4 HOH A 143 1743 143 HOH HOH . E 4 HOH A 144 1744 144 HOH HOH . E 4 HOH A 145 1745 145 HOH HOH . E 4 HOH A 146 1746 146 HOH HOH . E 4 HOH A 147 1747 147 HOH HOH . E 4 HOH A 148 1748 148 HOH HOH . E 4 HOH A 149 1749 149 HOH HOH . E 4 HOH A 150 1750 150 HOH HOH . E 4 HOH A 151 1751 151 HOH HOH . E 4 HOH A 152 1752 152 HOH HOH . E 4 HOH A 153 1753 153 HOH HOH . E 4 HOH A 154 1754 154 HOH HOH . E 4 HOH A 155 1755 155 HOH HOH . E 4 HOH A 156 1756 156 HOH HOH . E 4 HOH A 157 1757 157 HOH HOH . E 4 HOH A 158 1758 158 HOH HOH . E 4 HOH A 159 1759 159 HOH HOH . E 4 HOH A 160 1760 160 HOH HOH . E 4 HOH A 161 1761 161 HOH HOH . E 4 HOH A 162 1762 162 HOH HOH . E 4 HOH A 163 1763 163 HOH HOH . E 4 HOH A 164 1764 164 HOH HOH . E 4 HOH A 165 1765 165 HOH HOH . E 4 HOH A 166 1766 166 HOH HOH . E 4 HOH A 167 1767 167 HOH HOH . E 4 HOH A 168 1768 168 HOH HOH . E 4 HOH A 169 1769 169 HOH HOH . E 4 HOH A 170 1770 170 HOH HOH . E 4 HOH A 171 1771 171 HOH HOH . E 4 HOH A 172 1772 172 HOH HOH . E 4 HOH A 173 1773 173 HOH HOH . E 4 HOH A 174 1774 174 HOH HOH . E 4 HOH A 175 1775 175 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 4MK . . . D 3 -27.826 8.785 -7.156 1 24.31 ? C1 4MK 1503 A 1 HETATM 2 C C2 4MK . . . D 3 -26.601 7.828 -7.132 1 29.49 ? C2 4MK 1503 A 1 HETATM 3 C C3 4MK . . . D 3 -26.865 6.55 -7.983 1 28.88 ? C3 4MK 1503 A 1 HETATM 4 O O4 4MK . . . D 3 -25.487 8.592 -7.65 1 27.79 ? O4 4MK 1503 A 1 HETATM 5 C C5 4MK . . . D 3 -24.123 8.273 -7.508 1 28.83 ? C5 4MK 1503 A 1 HETATM 6 C C6 4MK . . . D 3 -23.627 7.228 -6.704 1 29.16 ? C6 4MK 1503 A 1 HETATM 7 C C7 4MK . . . D 3 -22.245 6.971 -6.566 1 32.08 ? C7 4MK 1503 A 1 HETATM 8 C C8 4MK . . . D 3 -21.78 5.788 -5.667 1 35.04 ? C8 4MK 1503 A 1 HETATM 9 C C9 4MK . . . D 3 -21.721 4.457 -6.49 1 37.98 ? C9 4MK 1503 A 1 HETATM 10 C C10 4MK . . . D 3 -21.175 3.274 -5.631 1 38.57 ? C10 4MK 1503 A 1 HETATM 11 N N11 4MK . . . D 3 -21.933 3.198 -4.349 1 38.52 ? N11 4MK 1503 A 1 HETATM 12 C C12 4MK . . . D 3 -21.958 4.425 -3.502 1 36.68 ? C12 4MK 1503 A 1 HETATM 13 C C13 4MK . . . D 3 -22.547 5.627 -4.312 1 35.53 ? C13 4MK 1503 A 1 HETATM 14 C C14 4MK . . . D 3 -21.335 7.761 -7.313 1 31.22 ? C14 4MK 1503 A 1 HETATM 15 C C15 4MK . . . D 3 -19.802 7.594 -7.248 1 29.28 ? C15 4MK 1503 A 1 HETATM 16 C C16 4MK . . . D 3 -21.843 8.78 -8.145 1 30.58 ? C16 4MK 1503 A 1 HETATM 17 C C17 4MK . . . D 3 -23.225 9.064 -8.232 1 28.41 ? C17 4MK 1503 A 1 HETATM 18 N N18 4MK . . . D 3 -23.773 10.052 -9.015 1 27.69 ? N18 4MK 1503 A 1 HETATM 19 C C19 4MK . . . D 3 -23.195 11.212 -9.402 1 24.91 ? C19 4MK 1503 A 1 HETATM 20 N N20 4MK . . . D 3 -23.733 12.006 -10.361 1 29.91 ? N20 4MK 1503 A 1 HETATM 21 C C21 4MK . . . D 3 -23.075 13.107 -10.783 1 28.83 ? C21 4MK 1503 A 1 HETATM 22 C C22 4MK . . . D 3 -21.861 13.465 -10.176 1 27.94 ? C22 4MK 1503 A 1 HETATM 23 CL CL1 4MK . . . D 3 -21.031 14.909 -10.664 1 28.12 ? CL1 4MK 1503 A 1 HETATM 24 C C24 4MK . . . D 3 -21.347 12.681 -9.141 1 25.14 ? C24 4MK 1503 A 1 HETATM 25 N N25 4MK . . . D 3 -20.165 12.982 -8.522 1 24.42 ? N25 4MK 1503 A 1 HETATM 26 C C26 4MK . . . D 3 -19.507 12.268 -7.537 1 29.09 ? C26 4MK 1503 A 1 HETATM 27 C C27 4MK . . . D 3 -20.202 11.435 -6.622 1 27.65 ? C27 4MK 1503 A 1 HETATM 28 C C28 4MK . . . D 3 -19.538 10.745 -5.592 1 29.4 ? C28 4MK 1503 A 1 HETATM 29 C C29 4MK . . . D 3 -18.157 10.899 -5.421 1 28.63 ? C29 4MK 1503 A 1 HETATM 30 C C30 4MK . . . D 3 -17.458 11.764 -6.275 1 30.77 ? C30 4MK 1503 A 1 HETATM 31 C C31 4MK . . . D 3 -18.101 12.428 -7.347 1 32.2 ? C31 4MK 1503 A 1 HETATM 32 S S32 4MK . . . D 3 -17.111 13.547 -8.339 1 36.28 ? S32 4MK 1503 A 1 HETATM 33 O O33 4MK . . . D 3 -17.942 14.597 -8.915 1 35.12 ? O33 4MK 1503 A 1 HETATM 34 O O34 4MK . . . D 3 -16.035 14.054 -7.494 1 37.74 ? O34 4MK 1503 A 1 HETATM 35 C C35 4MK . . . D 3 -16.433 12.551 -9.697 1 37.83 ? C35 4MK 1503 A 1 HETATM 36 C C36 4MK . . . D 3 -15.3 11.634 -9.16 1 36.42 ? C36 4MK 1503 A 1 HETATM 37 C C37 4MK . . . D 3 -17.505 11.799 -10.528 1 38.81 ? C37 4MK 1503 A 1 HETATM 38 N N38 4MK . . . D 3 -22.052 11.587 -8.815 1 24.32 ? N38 4MK 1503 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 38 #