data_4MKH # _model_server_result.job_id wcuf2Gu0Nf0THOiZfxnRiw _model_server_result.datetime_utc '2024-10-18 23:30:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4mkh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":305}' # _entry.id 4MKH # _exptl.entry_id 4MKH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.61 _cell.angle_gamma 90 _cell.entry_id 4MKH _cell.length_a 44.194 _cell.length_b 55.194 _cell.length_c 46.375 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4MKH _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 132 A CYS 130 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc2 A SG CYS 135 A CYS 133 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc3 A SG CYS 152 A CYS 150 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc4 A OD2 ASP 155 A ASP 153 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc5 A OD1 ASP 155 A ASP 153 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 174 n n C1 C2 EDO sing 175 n n C1 H11 EDO sing 176 n n C1 H12 EDO sing 177 n n O1 HO1 EDO sing 178 n n C2 O2 EDO sing 179 n n C2 H21 EDO sing 180 n n C2 H22 EDO sing 181 n n O2 HO2 EDO sing 182 n n # _atom_sites.entry_id 4MKH _atom_sites.fract_transf_matrix[1][1] 0.022628 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00851 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018118 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023038 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 1 ZN ZN . C 3 AP5 A 1 302 218 AP5 AP5 . D 4 EDO A 1 303 3318 EDO EDO . E 4 EDO A 1 304 3318 EDO EDO . F 4 EDO A 1 305 3318 EDO EDO . G 5 HOH A 1 401 3 HOH HOH . G 5 HOH A 2 402 4 HOH HOH . G 5 HOH A 3 403 6 HOH HOH . G 5 HOH A 4 404 8 HOH HOH . G 5 HOH A 5 405 9 HOH HOH . G 5 HOH A 6 406 11 HOH HOH . G 5 HOH A 7 407 17 HOH HOH . G 5 HOH A 8 408 18 HOH HOH . G 5 HOH A 9 409 21 HOH HOH . G 5 HOH A 10 410 24 HOH HOH . G 5 HOH A 11 411 29 HOH HOH . G 5 HOH A 12 412 30 HOH HOH . G 5 HOH A 13 413 31 HOH HOH . G 5 HOH A 14 414 32 HOH HOH . G 5 HOH A 15 415 34 HOH HOH . G 5 HOH A 16 416 35 HOH HOH . G 5 HOH A 17 417 36 HOH HOH . G 5 HOH A 18 418 37 HOH HOH . G 5 HOH A 19 419 38 HOH HOH . G 5 HOH A 20 420 39 HOH HOH . G 5 HOH A 21 421 41 HOH HOH . G 5 HOH A 22 422 44 HOH HOH . G 5 HOH A 23 423 45 HOH HOH . G 5 HOH A 24 424 48 HOH HOH . G 5 HOH A 25 425 49 HOH HOH . G 5 HOH A 26 426 50 HOH HOH . G 5 HOH A 27 427 51 HOH HOH . G 5 HOH A 28 428 53 HOH HOH . G 5 HOH A 29 429 54 HOH HOH . G 5 HOH A 30 430 55 HOH HOH . G 5 HOH A 31 431 59 HOH HOH . G 5 HOH A 32 432 61 HOH HOH . G 5 HOH A 33 433 62 HOH HOH . G 5 HOH A 34 434 64 HOH HOH . G 5 HOH A 35 435 66 HOH HOH . G 5 HOH A 36 436 67 HOH HOH . G 5 HOH A 37 437 68 HOH HOH . G 5 HOH A 38 438 69 HOH HOH . G 5 HOH A 39 439 70 HOH HOH . G 5 HOH A 40 440 71 HOH HOH . G 5 HOH A 41 441 72 HOH HOH . G 5 HOH A 42 442 73 HOH HOH . G 5 HOH A 43 443 76 HOH HOH . G 5 HOH A 44 444 77 HOH HOH . G 5 HOH A 45 445 79 HOH HOH . G 5 HOH A 46 446 82 HOH HOH . G 5 HOH A 47 447 83 HOH HOH . G 5 HOH A 48 448 84 HOH HOH . G 5 HOH A 49 449 85 HOH HOH . G 5 HOH A 50 450 86 HOH HOH . G 5 HOH A 51 451 87 HOH HOH . G 5 HOH A 52 452 88 HOH HOH . G 5 HOH A 53 453 90 HOH HOH . G 5 HOH A 54 454 91 HOH HOH . G 5 HOH A 55 455 93 HOH HOH . G 5 HOH A 56 456 94 HOH HOH . G 5 HOH A 57 457 96 HOH HOH . G 5 HOH A 58 458 97 HOH HOH . G 5 HOH A 59 459 98 HOH HOH . G 5 HOH A 60 460 100 HOH HOH . G 5 HOH A 61 461 102 HOH HOH . G 5 HOH A 62 462 103 HOH HOH . G 5 HOH A 63 463 106 HOH HOH . G 5 HOH A 64 464 108 HOH HOH . G 5 HOH A 65 465 109 HOH HOH . G 5 HOH A 66 466 115 HOH HOH . G 5 HOH A 67 467 119 HOH HOH . G 5 HOH A 68 468 120 HOH HOH . G 5 HOH A 69 469 121 HOH HOH . G 5 HOH A 70 470 124 HOH HOH . G 5 HOH A 71 471 125 HOH HOH . G 5 HOH A 72 472 126 HOH HOH . G 5 HOH A 73 473 129 HOH HOH . G 5 HOH A 74 474 130 HOH HOH . G 5 HOH A 75 475 132 HOH HOH . G 5 HOH A 76 476 133 HOH HOH . G 5 HOH A 77 477 137 HOH HOH . G 5 HOH A 78 478 141 HOH HOH . G 5 HOH A 79 479 142 HOH HOH . G 5 HOH A 80 480 146 HOH HOH . G 5 HOH A 81 481 148 HOH HOH . G 5 HOH A 82 482 152 HOH HOH . G 5 HOH A 83 483 159 HOH HOH . G 5 HOH A 84 484 161 HOH HOH . G 5 HOH A 85 485 163 HOH HOH . G 5 HOH A 86 486 175 HOH HOH . G 5 HOH A 87 487 176 HOH HOH . G 5 HOH A 88 488 178 HOH HOH . G 5 HOH A 89 489 187 HOH HOH . G 5 HOH A 90 490 189 HOH HOH . G 5 HOH A 91 491 192 HOH HOH . G 5 HOH A 92 492 194 HOH HOH . G 5 HOH A 93 493 196 HOH HOH . G 5 HOH A 94 494 199 HOH HOH . G 5 HOH A 95 495 205 HOH HOH . G 5 HOH A 96 496 208 HOH HOH . G 5 HOH A 97 497 209 HOH HOH . G 5 HOH A 98 498 210 HOH HOH . G 5 HOH A 99 499 211 HOH HOH . G 5 HOH A 100 500 212 HOH HOH . G 5 HOH A 101 501 213 HOH HOH . G 5 HOH A 102 502 214 HOH HOH . G 5 HOH A 103 503 215 HOH HOH . G 5 HOH A 104 504 216 HOH HOH . G 5 HOH A 105 505 218 HOH HOH . G 5 HOH A 106 506 220 HOH HOH . G 5 HOH A 107 507 221 HOH HOH . G 5 HOH A 108 508 222 HOH HOH . G 5 HOH A 109 509 223 HOH HOH . G 5 HOH A 110 510 226 HOH HOH . G 5 HOH A 111 511 227 HOH HOH . G 5 HOH A 112 512 228 HOH HOH . G 5 HOH A 113 513 229 HOH HOH . G 5 HOH A 114 514 230 HOH HOH . G 5 HOH A 115 515 231 HOH HOH . G 5 HOH A 116 516 233 HOH HOH . G 5 HOH A 117 517 236 HOH HOH . G 5 HOH A 118 518 237 HOH HOH . G 5 HOH A 119 519 239 HOH HOH . G 5 HOH A 120 520 241 HOH HOH . G 5 HOH A 121 521 242 HOH HOH . G 5 HOH A 122 522 243 HOH HOH . G 5 HOH A 123 523 244 HOH HOH . G 5 HOH A 124 524 245 HOH HOH . G 5 HOH A 125 525 246 HOH HOH . G 5 HOH A 126 526 247 HOH HOH . G 5 HOH A 127 527 248 HOH HOH . G 5 HOH A 128 528 249 HOH HOH . G 5 HOH A 129 529 250 HOH HOH . G 5 HOH A 130 530 251 HOH HOH . G 5 HOH A 131 531 252 HOH HOH . G 5 HOH A 132 532 253 HOH HOH . G 5 HOH A 133 533 254 HOH HOH . G 5 HOH A 134 534 255 HOH HOH . G 5 HOH A 135 535 256 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 4 17.496 -17.205 -7.753 1 29.29 ? C1 EDO 305 A 1 HETATM 2 O O1 EDO . . . F 4 17.591 -17.19 -9.18 1 27.69 ? O1 EDO 305 A 1 HETATM 3 C C2 EDO . . . F 4 17.506 -15.746 -7.284 1 27.27 ? C2 EDO 305 A 1 HETATM 4 O O2 EDO . . . F 4 16.214 -15.229 -7.795 1 28.07 ? O2 EDO 305 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #