data_4ML4 # _model_server_result.job_id ZD5yNbvlAo-h9yP9L18LRA _model_server_result.datetime_utc '2024-11-24 07:41:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ml4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4ML4 # _exptl.entry_id 4ML4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4ML4 _cell.length_a 61.174 _cell.length_b 67.088 _cell.length_c 106.569 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ML4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 5 A CYS 5 1_555 A SG CYS 30 A CYS 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? disulf ? disulf2 A SG CYS 278 A CYS 279 1_555 A SG CYS 342 A CYS 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? covale ? covale1 A ND2 ASN 39 A ASN 39 1_555 B C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4ML4 _atom_sites.fract_transf_matrix[1][1] 0.016347 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014906 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009384 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 401 363 NAG NAG . C 3 PYE A 1 402 1 PYE PYE . D 4 HOH A 1 501 1 HOH HOH . D 4 HOH A 2 502 2 HOH HOH . D 4 HOH A 3 503 3 HOH HOH . D 4 HOH A 4 504 4 HOH HOH . D 4 HOH A 5 505 5 HOH HOH . D 4 HOH A 6 506 6 HOH HOH . D 4 HOH A 7 507 7 HOH HOH . D 4 HOH A 8 508 8 HOH HOH . D 4 HOH A 9 509 10 HOH HOH . D 4 HOH A 10 510 11 HOH HOH . D 4 HOH A 11 511 13 HOH HOH . D 4 HOH A 12 512 16 HOH HOH . D 4 HOH A 13 513 17 HOH HOH . D 4 HOH A 14 514 18 HOH HOH . D 4 HOH A 15 515 19 HOH HOH . D 4 HOH A 16 516 20 HOH HOH . D 4 HOH A 17 517 21 HOH HOH . D 4 HOH A 18 518 22 HOH HOH . D 4 HOH A 19 519 23 HOH HOH . D 4 HOH A 20 520 24 HOH HOH . D 4 HOH A 21 521 25 HOH HOH . D 4 HOH A 22 522 26 HOH HOH . D 4 HOH A 23 523 27 HOH HOH . D 4 HOH A 24 524 29 HOH HOH . D 4 HOH A 25 525 31 HOH HOH . D 4 HOH A 26 526 32 HOH HOH . D 4 HOH A 27 527 34 HOH HOH . D 4 HOH A 28 528 35 HOH HOH . D 4 HOH A 29 529 36 HOH HOH . D 4 HOH A 30 530 39 HOH HOH . D 4 HOH A 31 531 40 HOH HOH . D 4 HOH A 32 532 41 HOH HOH . D 4 HOH A 33 533 42 HOH HOH . D 4 HOH A 34 534 43 HOH HOH . D 4 HOH A 35 535 46 HOH HOH . D 4 HOH A 36 536 47 HOH HOH . D 4 HOH A 37 537 49 HOH HOH . D 4 HOH A 38 538 50 HOH HOH . D 4 HOH A 39 539 51 HOH HOH . D 4 HOH A 40 540 54 HOH HOH . D 4 HOH A 41 541 56 HOH HOH . D 4 HOH A 42 542 57 HOH HOH . D 4 HOH A 43 543 58 HOH HOH . D 4 HOH A 44 544 59 HOH HOH . D 4 HOH A 45 545 61 HOH HOH . D 4 HOH A 46 546 63 HOH HOH . D 4 HOH A 47 547 65 HOH HOH . D 4 HOH A 48 548 66 HOH HOH . D 4 HOH A 49 549 67 HOH HOH . D 4 HOH A 50 550 69 HOH HOH . D 4 HOH A 51 551 73 HOH HOH . D 4 HOH A 52 552 74 HOH HOH . D 4 HOH A 53 553 76 HOH HOH . D 4 HOH A 54 554 78 HOH HOH . D 4 HOH A 55 555 79 HOH HOH . D 4 HOH A 56 556 80 HOH HOH . D 4 HOH A 57 557 83 HOH HOH . D 4 HOH A 58 558 84 HOH HOH . D 4 HOH A 59 559 89 HOH HOH . D 4 HOH A 60 560 90 HOH HOH . D 4 HOH A 61 561 91 HOH HOH . D 4 HOH A 62 562 93 HOH HOH . D 4 HOH A 63 563 95 HOH HOH . D 4 HOH A 64 564 99 HOH HOH . D 4 HOH A 65 565 101 HOH HOH . D 4 HOH A 66 566 103 HOH HOH . D 4 HOH A 67 567 105 HOH HOH . D 4 HOH A 68 568 106 HOH HOH . D 4 HOH A 69 569 109 HOH HOH . D 4 HOH A 70 570 110 HOH HOH . D 4 HOH A 71 571 113 HOH HOH . D 4 HOH A 72 572 114 HOH HOH . D 4 HOH A 73 573 115 HOH HOH . D 4 HOH A 74 574 116 HOH HOH . D 4 HOH A 75 575 119 HOH HOH . D 4 HOH A 76 576 120 HOH HOH . D 4 HOH A 77 577 121 HOH HOH . D 4 HOH A 78 578 122 HOH HOH . D 4 HOH A 79 579 123 HOH HOH . D 4 HOH A 80 580 124 HOH HOH . D 4 HOH A 81 581 125 HOH HOH . D 4 HOH A 82 582 126 HOH HOH . D 4 HOH A 83 583 127 HOH HOH . D 4 HOH A 84 584 128 HOH HOH . D 4 HOH A 85 585 129 HOH HOH . D 4 HOH A 86 586 130 HOH HOH . D 4 HOH A 87 587 133 HOH HOH . D 4 HOH A 88 588 134 HOH HOH . D 4 HOH A 89 589 135 HOH HOH . D 4 HOH A 90 590 136 HOH HOH . D 4 HOH A 91 591 137 HOH HOH . D 4 HOH A 92 592 138 HOH HOH . D 4 HOH A 93 593 139 HOH HOH . D 4 HOH A 94 594 140 HOH HOH . D 4 HOH A 95 595 141 HOH HOH . D 4 HOH A 96 596 142 HOH HOH . D 4 HOH A 97 597 143 HOH HOH . D 4 HOH A 98 598 144 HOH HOH . D 4 HOH A 99 599 145 HOH HOH . D 4 HOH A 100 600 146 HOH HOH . D 4 HOH A 101 601 147 HOH HOH . D 4 HOH A 102 602 148 HOH HOH . D 4 HOH A 103 603 149 HOH HOH . D 4 HOH A 104 604 150 HOH HOH . D 4 HOH A 105 605 151 HOH HOH . D 4 HOH A 106 606 152 HOH HOH . D 4 HOH A 107 607 153 HOH HOH . D 4 HOH A 108 608 154 HOH HOH . D 4 HOH A 109 609 155 HOH HOH . D 4 HOH A 110 610 156 HOH HOH . D 4 HOH A 111 611 157 HOH HOH . D 4 HOH A 112 612 158 HOH HOH . D 4 HOH A 113 613 159 HOH HOH . D 4 HOH A 114 614 160 HOH HOH . D 4 HOH A 115 615 161 HOH HOH . D 4 HOH A 116 616 162 HOH HOH . D 4 HOH A 117 617 163 HOH HOH . D 4 HOH A 118 618 164 HOH HOH . D 4 HOH A 119 619 165 HOH HOH . D 4 HOH A 120 620 166 HOH HOH . D 4 HOH A 121 621 167 HOH HOH . D 4 HOH A 122 622 168 HOH HOH . D 4 HOH A 123 623 169 HOH HOH . D 4 HOH A 124 624 171 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . B 2 17.868 17.927 -7.324 1 42.7 ? C1 NAG 401 A 1 HETATM 2 C C2 NAG . . . B 2 17.246 18.449 -8.619 1 45.34 ? C2 NAG 401 A 1 HETATM 3 C C3 NAG . . . B 2 18.164 19.54 -9.189 1 44.24 ? C3 NAG 401 A 1 HETATM 4 C C4 NAG . . . B 2 18.275 20.641 -8.146 1 49.67 ? C4 NAG 401 A 1 HETATM 5 C C5 NAG . . . B 2 19.046 19.938 -7.009 1 50.46 ? C5 NAG 401 A 1 HETATM 6 C C6 NAG . . . B 2 19.631 20.894 -5.974 1 45.95 ? C6 NAG 401 A 1 HETATM 7 C C7 NAG . . . B 2 15.863 16.962 -10.053 1 49.69 ? C7 NAG 401 A 1 HETATM 8 C C8 NAG . . . B 2 15.823 15.992 -11.206 1 50.38 ? C8 NAG 401 A 1 HETATM 9 N N2 NAG . . . B 2 17.057 17.447 -9.677 1 46.8 ? N2 NAG 401 A 1 HETATM 10 O O3 NAG . . . B 2 17.698 20.019 -10.415 1 41.1 ? O3 NAG 401 A 1 HETATM 11 O O4 NAG . . . B 2 18.854 21.84 -8.661 1 53.56 ? O4 NAG 401 A 1 HETATM 12 O O5 NAG . . . B 2 18.175 18.963 -6.409 1 47.67 ? O5 NAG 401 A 1 HETATM 13 O O6 NAG . . . B 2 18.583 21.446 -5.214 1 40.39 ? O6 NAG 401 A 1 HETATM 14 O O7 NAG . . . B 2 14.799 17.252 -9.511 1 51.41 ? O7 NAG 401 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #