data_4ML4
#
_model_server_result.job_id            6vJyiHIvNNFhoJpirP052g 
_model_server_result.datetime_utc      '2024-11-08 10:03:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ml4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":402}' 
#
_entry.id    4ML4 
#
_exptl.entry_id    4ML4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              86.132 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            TETRAHYDROPYRAN 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4ML4 
_cell.length_a            61.174 
_cell.length_b            67.088 
_cell.length_c            106.569 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4ML4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 5 A CYS 5 1_555 A SG CYS 30 A CYS 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? 
disulf ? disulf2 A SG CYS 278 A CYS 279 1_555 A SG CYS 342 A CYS 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? 
covale ? covale1 A ND2 ASN 39 A ASN 39 1_555 B C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? 
#
_chem_comp.formula           'C5 H10 O' 
_chem_comp.formula_weight    86.132 
_chem_comp.id                PYE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              TETRAHYDROPYRAN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 PYE sing 307 n n 
C1 O5 PYE sing 308 n n 
C1 H11 PYE sing 309 n n 
C1 H12 PYE sing 310 n n 
C2 C3 PYE sing 311 n n 
C2 H21 PYE sing 312 n n 
C2 H22 PYE sing 313 n n 
C3 C4 PYE sing 314 n n 
C3 H31 PYE sing 315 n n 
C3 H32 PYE sing 316 n n 
C4 C5 PYE sing 317 n n 
C4 H41 PYE sing 318 n n 
C4 H42 PYE sing 319 n n 
C5 O5 PYE sing 320 n n 
C5 H51 PYE sing 321 n n 
C5 H52 PYE sing 322 n n 
#
_atom_sites.entry_id                     4ML4 
_atom_sites.fract_transf_matrix[1][1]    0.016347 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014906 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009384 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAG A 1 401 363 NAG NAG . 
C 3 PYE A 1 402 1 PYE PYE . 
D 4 HOH A 1 501 1 HOH HOH . 
D 4 HOH A 2 502 2 HOH HOH . 
D 4 HOH A 3 503 3 HOH HOH . 
D 4 HOH A 4 504 4 HOH HOH . 
D 4 HOH A 5 505 5 HOH HOH . 
D 4 HOH A 6 506 6 HOH HOH . 
D 4 HOH A 7 507 7 HOH HOH . 
D 4 HOH A 8 508 8 HOH HOH . 
D 4 HOH A 9 509 10 HOH HOH . 
D 4 HOH A 10 510 11 HOH HOH . 
D 4 HOH A 11 511 13 HOH HOH . 
D 4 HOH A 12 512 16 HOH HOH . 
D 4 HOH A 13 513 17 HOH HOH . 
D 4 HOH A 14 514 18 HOH HOH . 
D 4 HOH A 15 515 19 HOH HOH . 
D 4 HOH A 16 516 20 HOH HOH . 
D 4 HOH A 17 517 21 HOH HOH . 
D 4 HOH A 18 518 22 HOH HOH . 
D 4 HOH A 19 519 23 HOH HOH . 
D 4 HOH A 20 520 24 HOH HOH . 
D 4 HOH A 21 521 25 HOH HOH . 
D 4 HOH A 22 522 26 HOH HOH . 
D 4 HOH A 23 523 27 HOH HOH . 
D 4 HOH A 24 524 29 HOH HOH . 
D 4 HOH A 25 525 31 HOH HOH . 
D 4 HOH A 26 526 32 HOH HOH . 
D 4 HOH A 27 527 34 HOH HOH . 
D 4 HOH A 28 528 35 HOH HOH . 
D 4 HOH A 29 529 36 HOH HOH . 
D 4 HOH A 30 530 39 HOH HOH . 
D 4 HOH A 31 531 40 HOH HOH . 
D 4 HOH A 32 532 41 HOH HOH . 
D 4 HOH A 33 533 42 HOH HOH . 
D 4 HOH A 34 534 43 HOH HOH . 
D 4 HOH A 35 535 46 HOH HOH . 
D 4 HOH A 36 536 47 HOH HOH . 
D 4 HOH A 37 537 49 HOH HOH . 
D 4 HOH A 38 538 50 HOH HOH . 
D 4 HOH A 39 539 51 HOH HOH . 
D 4 HOH A 40 540 54 HOH HOH . 
D 4 HOH A 41 541 56 HOH HOH . 
D 4 HOH A 42 542 57 HOH HOH . 
D 4 HOH A 43 543 58 HOH HOH . 
D 4 HOH A 44 544 59 HOH HOH . 
D 4 HOH A 45 545 61 HOH HOH . 
D 4 HOH A 46 546 63 HOH HOH . 
D 4 HOH A 47 547 65 HOH HOH . 
D 4 HOH A 48 548 66 HOH HOH . 
D 4 HOH A 49 549 67 HOH HOH . 
D 4 HOH A 50 550 69 HOH HOH . 
D 4 HOH A 51 551 73 HOH HOH . 
D 4 HOH A 52 552 74 HOH HOH . 
D 4 HOH A 53 553 76 HOH HOH . 
D 4 HOH A 54 554 78 HOH HOH . 
D 4 HOH A 55 555 79 HOH HOH . 
D 4 HOH A 56 556 80 HOH HOH . 
D 4 HOH A 57 557 83 HOH HOH . 
D 4 HOH A 58 558 84 HOH HOH . 
D 4 HOH A 59 559 89 HOH HOH . 
D 4 HOH A 60 560 90 HOH HOH . 
D 4 HOH A 61 561 91 HOH HOH . 
D 4 HOH A 62 562 93 HOH HOH . 
D 4 HOH A 63 563 95 HOH HOH . 
D 4 HOH A 64 564 99 HOH HOH . 
D 4 HOH A 65 565 101 HOH HOH . 
D 4 HOH A 66 566 103 HOH HOH . 
D 4 HOH A 67 567 105 HOH HOH . 
D 4 HOH A 68 568 106 HOH HOH . 
D 4 HOH A 69 569 109 HOH HOH . 
D 4 HOH A 70 570 110 HOH HOH . 
D 4 HOH A 71 571 113 HOH HOH . 
D 4 HOH A 72 572 114 HOH HOH . 
D 4 HOH A 73 573 115 HOH HOH . 
D 4 HOH A 74 574 116 HOH HOH . 
D 4 HOH A 75 575 119 HOH HOH . 
D 4 HOH A 76 576 120 HOH HOH . 
D 4 HOH A 77 577 121 HOH HOH . 
D 4 HOH A 78 578 122 HOH HOH . 
D 4 HOH A 79 579 123 HOH HOH . 
D 4 HOH A 80 580 124 HOH HOH . 
D 4 HOH A 81 581 125 HOH HOH . 
D 4 HOH A 82 582 126 HOH HOH . 
D 4 HOH A 83 583 127 HOH HOH . 
D 4 HOH A 84 584 128 HOH HOH . 
D 4 HOH A 85 585 129 HOH HOH . 
D 4 HOH A 86 586 130 HOH HOH . 
D 4 HOH A 87 587 133 HOH HOH . 
D 4 HOH A 88 588 134 HOH HOH . 
D 4 HOH A 89 589 135 HOH HOH . 
D 4 HOH A 90 590 136 HOH HOH . 
D 4 HOH A 91 591 137 HOH HOH . 
D 4 HOH A 92 592 138 HOH HOH . 
D 4 HOH A 93 593 139 HOH HOH . 
D 4 HOH A 94 594 140 HOH HOH . 
D 4 HOH A 95 595 141 HOH HOH . 
D 4 HOH A 96 596 142 HOH HOH . 
D 4 HOH A 97 597 143 HOH HOH . 
D 4 HOH A 98 598 144 HOH HOH . 
D 4 HOH A 99 599 145 HOH HOH . 
D 4 HOH A 100 600 146 HOH HOH . 
D 4 HOH A 101 601 147 HOH HOH . 
D 4 HOH A 102 602 148 HOH HOH . 
D 4 HOH A 103 603 149 HOH HOH . 
D 4 HOH A 104 604 150 HOH HOH . 
D 4 HOH A 105 605 151 HOH HOH . 
D 4 HOH A 106 606 152 HOH HOH . 
D 4 HOH A 107 607 153 HOH HOH . 
D 4 HOH A 108 608 154 HOH HOH . 
D 4 HOH A 109 609 155 HOH HOH . 
D 4 HOH A 110 610 156 HOH HOH . 
D 4 HOH A 111 611 157 HOH HOH . 
D 4 HOH A 112 612 158 HOH HOH . 
D 4 HOH A 113 613 159 HOH HOH . 
D 4 HOH A 114 614 160 HOH HOH . 
D 4 HOH A 115 615 161 HOH HOH . 
D 4 HOH A 116 616 162 HOH HOH . 
D 4 HOH A 117 617 163 HOH HOH . 
D 4 HOH A 118 618 164 HOH HOH . 
D 4 HOH A 119 619 165 HOH HOH . 
D 4 HOH A 120 620 166 HOH HOH . 
D 4 HOH A 121 621 167 HOH HOH . 
D 4 HOH A 122 622 168 HOH HOH . 
D 4 HOH A 123 623 169 HOH HOH . 
D 4 HOH A 124 624 171 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PYE . . . C 3 25.322 -0.955 -9.365 1 38.72 ? C1 PYE 402 A 1 
HETATM 2 C C2 PYE . . . C 3 25.832 0.301 -10.06 1 37.6 ? C2 PYE 402 A 1 
HETATM 3 C C3 PYE . . . C 3 25.132 1.544 -9.524 1 37.51 ? C3 PYE 402 A 1 
HETATM 4 C C4 PYE . . . C 3 23.62 1.355 -9.506 1 36.4 ? C4 PYE 402 A 1 
HETATM 5 C C5 PYE . . . C 3 23.242 0.035 -8.845 1 36.29 ? C5 PYE 402 A 1 
HETATM 6 O O5 PYE . . . C 3 23.906 -1.038 -9.51 1 38.2 ? O5 PYE 402 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           324 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           6 
#