data_4ML8 # _model_server_result.job_id EYTUIuMIX_uKl6dVNlfFxA _model_server_result.datetime_utc '2024-11-08 01:37:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ml8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":601}' # _entry.id 4ML8 # _exptl.entry_id 4ML8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.08 _cell.angle_gamma 90 _cell.entry_id 4ML8 _cell.length_a 183.21 _cell.length_b 76.67 _cell.length_c 201.038 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ML8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,J 1 1 B,G,K 2 1 C,H,L 3 1 D,I,M 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 H N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A ND1 HIS 85 A HIS 100 1_555 E C8M FAD . A FAD 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale2 B ND1 HIS 85 B HIS 100 1_555 G C8M FAD . B FAD 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.387 ? covale ? covale3 C ND1 HIS 85 C HIS 100 1_555 H C8M FAD . C FAD 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.387 ? covale ? covale4 D ND1 HIS 85 D HIS 100 1_555 I C8M FAD . D FAD 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4ML8 _atom_sites.fract_transf_matrix[1][1] 0.005458 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000198 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013043 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004977 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FAD A 1 601 1 FAD FAD . F 3 PEG A 1 602 1 PEG PEG . G 2 FAD B 1 601 1 FAD FAD . H 2 FAD C 1 601 1 FAD FAD . I 2 FAD D 1 601 1 FAD FAD . J 4 HOH A 1 701 4 HOH HOH . J 4 HOH A 2 702 11 HOH HOH . J 4 HOH A 3 703 13 HOH HOH . J 4 HOH A 4 704 14 HOH HOH . J 4 HOH A 5 705 16 HOH HOH . J 4 HOH A 6 706 20 HOH HOH . J 4 HOH A 7 707 31 HOH HOH . J 4 HOH A 8 708 32 HOH HOH . J 4 HOH A 9 709 34 HOH HOH . J 4 HOH A 10 710 35 HOH HOH . J 4 HOH A 11 711 40 HOH HOH . J 4 HOH A 12 712 41 HOH HOH . J 4 HOH A 13 713 42 HOH HOH . J 4 HOH A 14 714 44 HOH HOH . J 4 HOH A 15 715 45 HOH HOH . J 4 HOH A 16 716 46 HOH HOH . J 4 HOH A 17 717 49 HOH HOH . J 4 HOH A 18 718 55 HOH HOH . J 4 HOH A 19 719 56 HOH HOH . J 4 HOH A 20 720 57 HOH HOH . J 4 HOH A 21 721 60 HOH HOH . J 4 HOH A 22 722 68 HOH HOH . J 4 HOH A 23 723 69 HOH HOH . J 4 HOH A 24 724 70 HOH HOH . J 4 HOH A 25 725 71 HOH HOH . J 4 HOH A 26 726 72 HOH HOH . J 4 HOH A 27 727 73 HOH HOH . J 4 HOH A 28 728 74 HOH HOH . K 4 HOH B 1 701 1 HOH HOH . K 4 HOH B 2 702 2 HOH HOH . K 4 HOH B 3 703 3 HOH HOH . K 4 HOH B 4 704 7 HOH HOH . K 4 HOH B 5 705 15 HOH HOH . K 4 HOH B 6 706 17 HOH HOH . K 4 HOH B 7 707 18 HOH HOH . K 4 HOH B 8 708 19 HOH HOH . K 4 HOH B 9 709 21 HOH HOH . K 4 HOH B 10 710 23 HOH HOH . K 4 HOH B 11 711 26 HOH HOH . K 4 HOH B 12 712 28 HOH HOH . K 4 HOH B 13 713 30 HOH HOH . K 4 HOH B 14 714 37 HOH HOH . K 4 HOH B 15 715 50 HOH HOH . K 4 HOH B 16 716 52 HOH HOH . K 4 HOH B 17 717 53 HOH HOH . K 4 HOH B 18 718 58 HOH HOH . K 4 HOH B 19 719 62 HOH HOH . K 4 HOH B 20 720 63 HOH HOH . K 4 HOH B 21 721 75 HOH HOH . K 4 HOH B 22 722 76 HOH HOH . L 4 HOH C 1 701 5 HOH HOH . L 4 HOH C 2 702 8 HOH HOH . L 4 HOH C 3 703 9 HOH HOH . L 4 HOH C 4 704 10 HOH HOH . L 4 HOH C 5 705 22 HOH HOH . L 4 HOH C 6 706 24 HOH HOH . L 4 HOH C 7 707 25 HOH HOH . L 4 HOH C 8 708 33 HOH HOH . L 4 HOH C 9 709 36 HOH HOH . L 4 HOH C 10 710 39 HOH HOH . L 4 HOH C 11 711 47 HOH HOH . L 4 HOH C 12 712 51 HOH HOH . L 4 HOH C 13 713 54 HOH HOH . L 4 HOH C 14 714 59 HOH HOH . L 4 HOH C 15 715 65 HOH HOH . L 4 HOH C 16 716 66 HOH HOH . L 4 HOH C 17 717 67 HOH HOH . L 4 HOH C 18 718 77 HOH HOH . L 4 HOH C 19 719 78 HOH HOH . M 4 HOH D 1 701 6 HOH HOH . M 4 HOH D 2 702 12 HOH HOH . M 4 HOH D 3 703 27 HOH HOH . M 4 HOH D 4 704 29 HOH HOH . M 4 HOH D 5 705 38 HOH HOH . M 4 HOH D 6 706 43 HOH HOH . M 4 HOH D 7 707 48 HOH HOH . M 4 HOH D 8 708 61 HOH HOH . M 4 HOH D 9 709 64 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . E 2 20.067 8.16 9.861 1 33.26 ? PA FAD 601 A 1 HETATM 2 O O1A FAD . . . E 2 19.33 7.769 11.087 1 37.1 ? O1A FAD 601 A 1 HETATM 3 O O2A FAD . . . E 2 19.558 7.583 8.558 1 31.35 ? O2A FAD 601 A 1 HETATM 4 O O5B FAD . . . E 2 19.986 9.698 9.608 1 30.04 ? O5B FAD 601 A 1 HETATM 5 C C5B FAD . . . E 2 20.485 10.552 10.66 1 26.08 ? C5B FAD 601 A 1 HETATM 6 C C4B FAD . . . E 2 20.516 11.995 10.209 1 26.51 ? C4B FAD 601 A 1 HETATM 7 O O4B FAD . . . E 2 21.764 12.264 9.537 1 28.97 ? O4B FAD 601 A 1 HETATM 8 C C3B FAD . . . E 2 19.43 12.425 9.227 1 25.79 ? C3B FAD 601 A 1 HETATM 9 O O3B FAD . . . E 2 19.139 13.808 9.363 1 29.91 ? O3B FAD 601 A 1 HETATM 10 C C2B FAD . . . E 2 20.081 12.145 7.875 1 22.51 ? C2B FAD 601 A 1 HETATM 11 O O2B FAD . . . E 2 19.481 12.81 6.772 1 19.59 ? O2B FAD 601 A 1 HETATM 12 C C1B FAD . . . E 2 21.547 12.51 8.156 1 25.4 ? C1B FAD 601 A 1 HETATM 13 N N9A FAD . . . E 2 22.528 11.719 7.418 1 28.5 ? N9A FAD 601 A 1 HETATM 14 C C8A FAD . . . E 2 22.55 10.355 7.258 1 29.55 ? C8A FAD 601 A 1 HETATM 15 N N7A FAD . . . E 2 23.608 9.906 6.632 1 34.56 ? N7A FAD 601 A 1 HETATM 16 C C5A FAD . . . E 2 24.341 11.052 6.357 1 37.73 ? C5A FAD 601 A 1 HETATM 17 C C6A FAD . . . E 2 25.572 11.265 5.69 1 34.47 ? C6A FAD 601 A 1 HETATM 18 N N6A FAD . . . E 2 26.285 10.295 5.108 1 32.83 ? N6A FAD 601 A 1 HETATM 19 N N1A FAD . . . E 2 26.008 12.539 5.574 1 32.1 ? N1A FAD 601 A 1 HETATM 20 C C2A FAD . . . E 2 25.261 13.528 6.079 1 34.32 ? C2A FAD 601 A 1 HETATM 21 N N3A FAD . . . E 2 24.086 13.455 6.717 1 34.45 ? N3A FAD 601 A 1 HETATM 22 C C4A FAD . . . E 2 23.681 12.18 6.829 1 34.53 ? C4A FAD 601 A 1 HETATM 23 N N1 FAD . . . E 2 23.441 7.422 19.214 1 35.1 ? N1 FAD 601 A 1 HETATM 24 C C2 FAD . . . E 2 24.545 7.628 20.012 1 34.81 ? C2 FAD 601 A 1 HETATM 25 O O2 FAD . . . E 2 25.266 8.619 19.872 1 35.16 ? O2 FAD 601 A 1 HETATM 26 N N3 FAD . . . E 2 24.942 6.645 20.921 1 33.97 ? N3 FAD 601 A 1 HETATM 27 C C4 FAD . . . E 2 24.37 5.395 21.065 1 32.55 ? C4 FAD 601 A 1 HETATM 28 O O4 FAD . . . E 2 24.887 4.556 21.801 1 28.47 ? O4 FAD 601 A 1 HETATM 29 C C4X FAD . . . E 2 23.209 5.172 20.211 1 36.1 ? C4X FAD 601 A 1 HETATM 30 N N5 FAD . . . E 2 22.591 4.025 20.303 1 38.36 ? N5 FAD 601 A 1 HETATM 31 C C5X FAD . . . E 2 21.484 3.814 19.496 1 39.95 ? C5X FAD 601 A 1 HETATM 32 C C6 FAD . . . E 2 20.905 2.544 19.506 1 39.81 ? C6 FAD 601 A 1 HETATM 33 C C7 FAD . . . E 2 19.883 2.211 18.628 1 40.49 ? C7 FAD 601 A 1 HETATM 34 C C7M FAD . . . E 2 19.263 0.837 18.723 1 41.35 ? C7M FAD 601 A 1 HETATM 35 C C8 FAD . . . E 2 19.415 3.187 17.705 1 37.56 ? C8 FAD 601 A 1 HETATM 36 C C8M FAD . . . E 2 18.349 2.866 16.689 1 34.93 ? C8M FAD 601 A 1 HETATM 37 C C9 FAD . . . E 2 19.964 4.467 17.723 1 35.86 ? C9 FAD 601 A 1 HETATM 38 C C9A FAD . . . E 2 20.998 4.8 18.597 1 38.79 ? C9A FAD 601 A 1 HETATM 39 N N10 FAD . . . E 2 21.682 6.058 18.544 1 38.01 ? N10 FAD 601 A 1 HETATM 40 C C10 FAD . . . E 2 22.797 6.268 19.315 1 36.3 ? C10 FAD 601 A 1 HETATM 41 C C1' FAD . . . E 2 21.188 7.118 17.634 1 34.13 ? C1' FAD 601 A 1 HETATM 42 C C2' FAD . . . E 2 21.927 7.128 16.294 1 32.19 ? C2' FAD 601 A 1 HETATM 43 O O2' FAD . . . E 2 23.294 7.47 16.511 1 29.75 ? O2' FAD 601 A 1 HETATM 44 C C3' FAD . . . E 2 21.343 8.079 15.248 1 30.8 ? C3' FAD 601 A 1 HETATM 45 O O3' FAD . . . E 2 19.999 7.735 14.944 1 32.41 ? O3' FAD 601 A 1 HETATM 46 C C4' FAD . . . E 2 22.102 8.448 13.971 1 32.44 ? C4' FAD 601 A 1 HETATM 47 O O4' FAD . . . E 2 21.249 9.158 13.08 1 35.45 ? O4' FAD 601 A 1 HETATM 48 C C5' FAD . . . E 2 22.828 7.331 13.249 1 33.53 ? C5' FAD 601 A 1 HETATM 49 O O5' FAD . . . E 2 21.961 6.423 12.56 1 32.28 ? O5' FAD 601 A 1 HETATM 50 P P FAD . . . E 2 21.962 6.268 10.973 1 28.5 ? P FAD 601 A 1 HETATM 51 O O1P FAD . . . E 2 23.208 5.875 10.308 1 30.94 ? O1P FAD 601 A 1 HETATM 52 O O2P FAD . . . E 2 20.848 5.239 10.9 1 24.62 ? O2P FAD 601 A 1 HETATM 53 O O3P FAD . . . E 2 21.595 7.581 10.13 1 32.32 ? O3P FAD 601 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 67 _model_server_stats.query_time_ms 362 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 53 #