data_4MLR # _model_server_result.job_id q40sTXiWVIOpdfGxlZ-iMw _model_server_result.datetime_utc '2024-11-17 04:57:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4mlr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Y","auth_seq_id":303}' # _entry.id 4MLR # _exptl.entry_id 4MLR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.06 _cell.angle_gamma 90 _cell.entry_id 4MLR _cell.length_a 90.983 _cell.length_b 97.61 _cell.length_c 131.398 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4MLR _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,JA,KA,LA,MA 1 1 E,F,G,H,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,NA,OA,PA,QA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 K N N ? 3 M N N ? 3 N N N ? 3 V N N ? 3 Y N N ? 3 Z N N ? 3 EA N N ? 3 FA N N ? 3 GA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C VAL 173 A VAL 165 1_555 A N KPI 174 A KPI 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C KPI 174 A KPI 166 1_555 A N GLU 175 A GLU 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 B C VAL 173 B VAL 165 1_555 B N KPI 174 B KPI 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 B C KPI 174 B KPI 166 1_555 B N GLU 175 B GLU 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 C C VAL 173 C VAL 165 1_555 C N KPI 174 C KPI 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 C C KPI 174 C KPI 166 1_555 C N GLU 175 C GLU 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale7 D C VAL 173 D VAL 165 1_555 D N KPI 174 D KPI 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale8 D C KPI 174 D KPI 166 1_555 D N GLU 175 D GLU 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale9 E C VAL 173 E VAL 165 1_555 E N KPI 174 E KPI 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale10 E C KPI 174 E KPI 166 1_555 E N GLU 175 E GLU 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale11 F C VAL 173 F VAL 165 1_555 F N KPI 174 F KPI 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale12 F C KPI 174 F KPI 166 1_555 F N GLU 175 F GLU 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale13 G C VAL 173 G VAL 165 1_555 G N KPI 174 G KPI 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale14 G C KPI 174 G KPI 166 1_555 G N GLU 175 G GLU 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale15 H C VAL 173 H VAL 165 1_555 H N KPI 174 H KPI 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale16 H C KPI 174 H KPI 166 1_555 H N GLU 175 H GLU 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 89 n n C1 C2 EDO sing 90 n n C1 H11 EDO sing 91 n n C1 H12 EDO sing 92 n n O1 HO1 EDO sing 93 n n C2 O2 EDO sing 94 n n C2 H21 EDO sing 95 n n C2 H22 EDO sing 96 n n O2 HO2 EDO sing 97 n n # _atom_sites.entry_id 4MLR _atom_sites.fract_transf_matrix[1][1] 0.010991 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000395 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010245 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007615 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 LYS A 1 301 1 LYS LYS . J 2 LYS A 1 302 1 LYS LYS . K 3 EDO A 1 303 1 EDO EDO . L 4 ACT A 1 304 1 ACT ACT . M 3 EDO A 1 305 1 EDO EDO . N 3 EDO A 1 306 1 EDO EDO . O 2 LYS B 1 301 1 LYS LYS . P 5 PG4 B 1 302 1 PG4 PG4 . Q 6 PGE B 1 303 1 PGE PGE . R 2 LYS C 1 301 1 LYS LYS . S 5 PG4 C 1 302 1 PG4 PG4 . T 6 PGE C 1 303 1 PGE PGE . U 7 GOL C 1 304 1 GOL GOL . V 3 EDO D 1 301 1 EDO EDO . W 2 LYS E 1 301 1 LYS LYS . X 6 PGE E 1 302 1 PGE PGE . Y 3 EDO E 1 303 1 EDO EDO . Z 3 EDO E 1 304 1 EDO EDO . AA 2 LYS F 1 301 1 LYS LYS . BA 6 PGE F 1 302 1 PGE PGE . CA 4 ACT F 1 303 1 ACT ACT . DA 2 LYS G 1 301 1 LYS LYS . EA 3 EDO G 1 302 1 EDO EDO . FA 3 EDO G 1 303 1 EDO EDO . GA 3 EDO G 1 304 1 EDO EDO . HA 2 LYS H 1 301 1 LYS LYS . IA 6 PGE H 1 302 1 PGE PGE . JA 8 HOH A 1 401 4 HOH HOH . JA 8 HOH A 2 402 6 HOH HOH . JA 8 HOH A 3 403 20 HOH HOH . JA 8 HOH A 4 404 34 HOH HOH . JA 8 HOH A 5 405 40 HOH HOH . JA 8 HOH A 6 406 43 HOH HOH . JA 8 HOH A 7 407 53 HOH HOH . JA 8 HOH A 8 408 62 HOH HOH . JA 8 HOH A 9 409 88 HOH HOH . JA 8 HOH A 10 410 93 HOH HOH . JA 8 HOH A 11 411 104 HOH HOH . JA 8 HOH A 12 412 106 HOH HOH . JA 8 HOH A 13 413 107 HOH HOH . JA 8 HOH A 14 414 110 HOH HOH . JA 8 HOH A 15 415 112 HOH HOH . JA 8 HOH A 16 416 118 HOH HOH . JA 8 HOH A 17 417 119 HOH HOH . JA 8 HOH A 18 418 121 HOH HOH . JA 8 HOH A 19 419 126 HOH HOH . JA 8 HOH A 20 420 133 HOH HOH . JA 8 HOH A 21 421 136 HOH HOH . JA 8 HOH A 22 422 137 HOH HOH . JA 8 HOH A 23 423 155 HOH HOH . JA 8 HOH A 24 424 160 HOH HOH . JA 8 HOH A 25 425 161 HOH HOH . JA 8 HOH A 26 426 172 HOH HOH . JA 8 HOH A 27 427 190 HOH HOH . JA 8 HOH A 28 428 194 HOH HOH . JA 8 HOH A 29 429 207 HOH HOH . JA 8 HOH A 30 430 238 HOH HOH . JA 8 HOH A 31 431 249 HOH HOH . JA 8 HOH A 32 432 250 HOH HOH . JA 8 HOH A 33 433 251 HOH HOH . JA 8 HOH A 34 434 270 HOH HOH . JA 8 HOH A 35 435 288 HOH HOH . JA 8 HOH A 36 436 301 HOH HOH . JA 8 HOH A 37 437 305 HOH HOH . JA 8 HOH A 38 438 318 HOH HOH . JA 8 HOH A 39 439 320 HOH HOH . JA 8 HOH A 40 440 321 HOH HOH . JA 8 HOH A 41 441 324 HOH HOH . JA 8 HOH A 42 442 330 HOH HOH . KA 8 HOH B 1 401 1 HOH HOH . KA 8 HOH B 2 402 11 HOH HOH . KA 8 HOH B 3 403 13 HOH HOH . KA 8 HOH B 4 404 14 HOH HOH . KA 8 HOH B 5 405 16 HOH HOH . KA 8 HOH B 6 406 21 HOH HOH . KA 8 HOH B 7 407 54 HOH HOH . KA 8 HOH B 8 408 55 HOH HOH . KA 8 HOH B 9 409 74 HOH HOH . KA 8 HOH B 10 410 81 HOH HOH . KA 8 HOH B 11 411 92 HOH HOH . KA 8 HOH B 12 412 96 HOH HOH . KA 8 HOH B 13 413 101 HOH HOH . KA 8 HOH B 14 414 103 HOH HOH . KA 8 HOH B 15 415 108 HOH HOH . KA 8 HOH B 16 416 117 HOH HOH . KA 8 HOH B 17 417 123 HOH HOH . KA 8 HOH B 18 418 124 HOH HOH . KA 8 HOH B 19 419 127 HOH HOH . KA 8 HOH B 20 420 132 HOH HOH . KA 8 HOH B 21 421 176 HOH HOH . KA 8 HOH B 22 422 177 HOH HOH . KA 8 HOH B 23 423 201 HOH HOH . KA 8 HOH B 24 424 204 HOH HOH . KA 8 HOH B 25 425 248 HOH HOH . KA 8 HOH B 26 426 307 HOH HOH . KA 8 HOH B 27 427 308 HOH HOH . KA 8 HOH B 28 428 317 HOH HOH . KA 8 HOH B 29 429 322 HOH HOH . LA 8 HOH C 1 401 18 HOH HOH . LA 8 HOH C 2 402 25 HOH HOH . LA 8 HOH C 3 403 51 HOH HOH . LA 8 HOH C 4 404 61 HOH HOH . LA 8 HOH C 5 405 68 HOH HOH . LA 8 HOH C 6 406 69 HOH HOH . LA 8 HOH C 7 407 91 HOH HOH . LA 8 HOH C 8 408 98 HOH HOH . LA 8 HOH C 9 409 99 HOH HOH . LA 8 HOH C 10 410 100 HOH HOH . LA 8 HOH C 11 411 116 HOH HOH . LA 8 HOH C 12 412 125 HOH HOH . LA 8 HOH C 13 413 131 HOH HOH . LA 8 HOH C 14 414 152 HOH HOH . LA 8 HOH C 15 415 173 HOH HOH . LA 8 HOH C 16 416 174 HOH HOH . LA 8 HOH C 17 417 175 HOH HOH . LA 8 HOH C 18 418 214 HOH HOH . LA 8 HOH C 19 419 266 HOH HOH . LA 8 HOH C 20 420 273 HOH HOH . LA 8 HOH C 21 421 284 HOH HOH . LA 8 HOH C 22 422 304 HOH HOH . LA 8 HOH C 23 423 325 HOH HOH . MA 8 HOH D 1 401 5 HOH HOH . MA 8 HOH D 2 402 42 HOH HOH . MA 8 HOH D 3 403 63 HOH HOH . MA 8 HOH D 4 404 72 HOH HOH . MA 8 HOH D 5 405 89 HOH HOH . MA 8 HOH D 6 406 90 HOH HOH . MA 8 HOH D 7 407 94 HOH HOH . MA 8 HOH D 8 408 114 HOH HOH . MA 8 HOH D 9 409 120 HOH HOH . MA 8 HOH D 10 410 141 HOH HOH . MA 8 HOH D 11 411 144 HOH HOH . MA 8 HOH D 12 412 146 HOH HOH . MA 8 HOH D 13 413 149 HOH HOH . MA 8 HOH D 14 414 150 HOH HOH . MA 8 HOH D 15 415 154 HOH HOH . MA 8 HOH D 16 416 162 HOH HOH . MA 8 HOH D 17 417 188 HOH HOH . MA 8 HOH D 18 418 203 HOH HOH . MA 8 HOH D 19 419 227 HOH HOH . MA 8 HOH D 20 420 283 HOH HOH . MA 8 HOH D 21 421 287 HOH HOH . MA 8 HOH D 22 422 310 HOH HOH . MA 8 HOH D 23 423 334 HOH HOH . NA 8 HOH E 1 401 8 HOH HOH . NA 8 HOH E 2 402 9 HOH HOH . NA 8 HOH E 3 403 26 HOH HOH . NA 8 HOH E 4 404 29 HOH HOH . NA 8 HOH E 5 405 37 HOH HOH . NA 8 HOH E 6 406 46 HOH HOH . NA 8 HOH E 7 407 48 HOH HOH . NA 8 HOH E 8 408 56 HOH HOH . NA 8 HOH E 9 409 57 HOH HOH . NA 8 HOH E 10 410 58 HOH HOH . NA 8 HOH E 11 411 60 HOH HOH . NA 8 HOH E 12 412 70 HOH HOH . NA 8 HOH E 13 413 76 HOH HOH . NA 8 HOH E 14 414 77 HOH HOH . NA 8 HOH E 15 415 97 HOH HOH . NA 8 HOH E 16 416 111 HOH HOH . NA 8 HOH E 17 417 130 HOH HOH . NA 8 HOH E 18 418 134 HOH HOH . NA 8 HOH E 19 419 142 HOH HOH . NA 8 HOH E 20 420 181 HOH HOH . NA 8 HOH E 21 421 182 HOH HOH . NA 8 HOH E 22 422 189 HOH HOH . NA 8 HOH E 23 423 195 HOH HOH . NA 8 HOH E 24 424 236 HOH HOH . NA 8 HOH E 25 425 245 HOH HOH . NA 8 HOH E 26 426 256 HOH HOH . NA 8 HOH E 27 427 280 HOH HOH . NA 8 HOH E 28 428 285 HOH HOH . NA 8 HOH E 29 429 290 HOH HOH . NA 8 HOH E 30 430 291 HOH HOH . NA 8 HOH E 31 431 303 HOH HOH . NA 8 HOH E 32 432 331 HOH HOH . OA 8 HOH F 1 401 10 HOH HOH . OA 8 HOH F 2 402 15 HOH HOH . OA 8 HOH F 3 403 17 HOH HOH . OA 8 HOH F 4 404 19 HOH HOH . OA 8 HOH F 5 405 32 HOH HOH . OA 8 HOH F 6 406 36 HOH HOH . OA 8 HOH F 7 407 38 HOH HOH . OA 8 HOH F 8 408 49 HOH HOH . OA 8 HOH F 9 409 52 HOH HOH . OA 8 HOH F 10 410 67 HOH HOH . OA 8 HOH F 11 411 78 HOH HOH . OA 8 HOH F 12 412 87 HOH HOH . OA 8 HOH F 13 413 95 HOH HOH . OA 8 HOH F 14 414 105 HOH HOH . OA 8 HOH F 15 415 115 HOH HOH . OA 8 HOH F 16 416 140 HOH HOH . OA 8 HOH F 17 417 191 HOH HOH . OA 8 HOH F 18 418 205 HOH HOH . OA 8 HOH F 19 419 244 HOH HOH . OA 8 HOH F 20 420 276 HOH HOH . OA 8 HOH F 21 421 281 HOH HOH . OA 8 HOH F 22 422 323 HOH HOH . OA 8 HOH F 23 423 333 HOH HOH . PA 8 HOH G 1 401 7 HOH HOH . PA 8 HOH G 2 402 12 HOH HOH . PA 8 HOH G 3 403 22 HOH HOH . PA 8 HOH G 4 404 28 HOH HOH . PA 8 HOH G 5 405 30 HOH HOH . PA 8 HOH G 6 406 50 HOH HOH . PA 8 HOH G 7 407 73 HOH HOH . PA 8 HOH G 8 408 109 HOH HOH . PA 8 HOH G 9 409 129 HOH HOH . PA 8 HOH G 10 410 147 HOH HOH . PA 8 HOH G 11 411 168 HOH HOH . PA 8 HOH G 12 412 170 HOH HOH . PA 8 HOH G 13 413 193 HOH HOH . PA 8 HOH G 14 414 226 HOH HOH . PA 8 HOH G 15 415 286 HOH HOH . PA 8 HOH G 16 416 289 HOH HOH . PA 8 HOH G 17 417 329 HOH HOH . QA 8 HOH H 1 401 2 HOH HOH . QA 8 HOH H 2 402 24 HOH HOH . QA 8 HOH H 3 403 27 HOH HOH . QA 8 HOH H 4 404 33 HOH HOH . QA 8 HOH H 5 405 47 HOH HOH . QA 8 HOH H 6 406 59 HOH HOH . QA 8 HOH H 7 407 80 HOH HOH . QA 8 HOH H 8 408 86 HOH HOH . QA 8 HOH H 9 409 122 HOH HOH . QA 8 HOH H 10 410 139 HOH HOH . QA 8 HOH H 11 411 169 HOH HOH . QA 8 HOH H 12 412 179 HOH HOH . QA 8 HOH H 13 413 180 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . Y 3 49.604 -33.15 95.921 1 72.04 ? C1 EDO 303 E 1 HETATM 2 O O1 EDO . . . Y 3 50.093 -33.554 94.695 1 74.47 ? O1 EDO 303 E 1 HETATM 3 C C2 EDO . . . Y 3 48.123 -33.321 95.954 1 68.45 ? C2 EDO 303 E 1 HETATM 4 O O2 EDO . . . Y 3 47.677 -33.249 97.259 1 64.33 ? O2 EDO 303 E 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 55 _model_server_stats.query_time_ms 363 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #