data_4MM1
#
_model_server_result.job_id            '_F6-fstweQcBzRyelxxWDQ' 
_model_server_result.datetime_utc      '2024-11-14 04:45:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4mm1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":301}' 
#
_entry.id    4MM1 
#
_exptl.entry_id    4MM1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              172.074 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            SN-GLYCEROL-1-PHOSPHATE 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          109.5 
_cell.angle_gamma         90 
_cell.entry_id            4MM1 
_cell.length_a            143.675 
_cell.length_b            148.756 
_cell.length_c            91.503 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4MM1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA hexameric 6 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
PISA dimeric 2 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 1 1 
A,B,G,H,I,J,S,T 2 1 
C,E,K,L,O,P,U,W 3 1 
D,F,M,N,Q,R,V,X 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 I N N 
? 2 K N N 
? 2 M N N 
? 2 O N N 
? 2 Q N N 
#
_chem_comp.formula           'C3 H9 O6 P' 
_chem_comp.formula_weight    172.074 
_chem_comp.id                1GP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              SN-GLYCEROL-1-PHOSPHATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C3 C2 1GP sing 1 n n 
C3 O2 1GP sing 2 n n 
C3 H31 1GP sing 3 n n 
C3 H32 1GP sing 4 n n 
O3 C2 1GP sing 5 n n 
O3 HO3 1GP sing 6 n n 
C2 C1 1GP sing 7 n n 
C2 H2 1GP sing 8 n n 
O2 HO2 1GP sing 9 n n 
C1 O1P 1GP sing 10 n n 
C1 H11 1GP sing 11 n n 
C1 H12 1GP sing 12 n n 
O1P P 1GP sing 13 n n 
O2P P 1GP doub 14 n n 
O3P P 1GP sing 15 n n 
O3P HO3P 1GP sing 16 n n 
O4P P 1GP sing 17 n n 
O4P HO4P 1GP sing 18 n n 
#
_atom_sites.entry_id                     4MM1 
_atom_sites.fract_transf_matrix[1][1]    0.00696 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002465 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006722 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011594 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 1GP A 1 301 1 1GP 1GP . 
H 3 PGE A 1 302 1 PGE PGE . 
I 2 1GP B 1 301 2 1GP 1GP . 
J 3 PGE B 1 302 2 PGE PGE . 
K 2 1GP C 1 301 3 1GP 1GP . 
L 3 PGE C 1 302 3 PGE PGE . 
M 2 1GP D 1 301 4 1GP 1GP . 
N 3 PGE D 1 302 4 PGE PGE . 
O 2 1GP E 1 301 5 1GP 1GP . 
P 3 PGE E 1 302 5 PGE PGE . 
Q 2 1GP F 1 301 6 1GP 1GP . 
R 3 PGE F 1 302 6 PGE PGE . 
S 4 HOH A 1 401 2 HOH HOH . 
S 4 HOH A 2 402 4 HOH HOH . 
S 4 HOH A 3 403 11 HOH HOH . 
S 4 HOH A 4 404 12 HOH HOH . 
S 4 HOH A 5 405 13 HOH HOH . 
S 4 HOH A 6 406 19 HOH HOH . 
S 4 HOH A 7 407 28 HOH HOH . 
S 4 HOH A 8 408 32 HOH HOH . 
S 4 HOH A 9 409 41 HOH HOH . 
S 4 HOH A 10 410 45 HOH HOH . 
S 4 HOH A 11 411 46 HOH HOH . 
S 4 HOH A 12 412 50 HOH HOH . 
S 4 HOH A 13 413 51 HOH HOH . 
S 4 HOH A 14 414 56 HOH HOH . 
S 4 HOH A 15 415 59 HOH HOH . 
S 4 HOH A 16 416 60 HOH HOH . 
S 4 HOH A 17 417 63 HOH HOH . 
S 4 HOH A 18 418 65 HOH HOH . 
S 4 HOH A 19 419 67 HOH HOH . 
T 4 HOH B 1 401 26 HOH HOH . 
T 4 HOH B 2 402 30 HOH HOH . 
T 4 HOH B 3 403 34 HOH HOH . 
T 4 HOH B 4 404 36 HOH HOH . 
T 4 HOH B 5 405 37 HOH HOH . 
T 4 HOH B 6 406 39 HOH HOH . 
T 4 HOH B 7 407 44 HOH HOH . 
T 4 HOH B 8 408 47 HOH HOH . 
T 4 HOH B 9 409 64 HOH HOH . 
T 4 HOH B 10 410 66 HOH HOH . 
U 4 HOH C 1 401 1 HOH HOH . 
U 4 HOH C 2 402 6 HOH HOH . 
U 4 HOH C 3 403 7 HOH HOH . 
U 4 HOH C 4 404 9 HOH HOH . 
U 4 HOH C 5 405 24 HOH HOH . 
U 4 HOH C 6 406 27 HOH HOH . 
U 4 HOH C 7 407 33 HOH HOH . 
U 4 HOH C 8 408 43 HOH HOH . 
U 4 HOH C 9 409 48 HOH HOH . 
U 4 HOH C 10 410 52 HOH HOH . 
U 4 HOH C 11 411 54 HOH HOH . 
U 4 HOH C 12 412 58 HOH HOH . 
U 4 HOH C 13 413 61 HOH HOH . 
U 4 HOH C 14 414 62 HOH HOH . 
U 4 HOH C 15 415 71 HOH HOH . 
V 4 HOH D 1 401 3 HOH HOH . 
V 4 HOH D 2 402 10 HOH HOH . 
V 4 HOH D 3 403 18 HOH HOH . 
V 4 HOH D 4 404 38 HOH HOH . 
V 4 HOH D 5 405 53 HOH HOH . 
V 4 HOH D 6 406 55 HOH HOH . 
V 4 HOH D 7 407 70 HOH HOH . 
V 4 HOH D 8 408 72 HOH HOH . 
V 4 HOH D 9 409 73 HOH HOH . 
W 4 HOH E 1 401 8 HOH HOH . 
W 4 HOH E 2 402 14 HOH HOH . 
W 4 HOH E 3 403 15 HOH HOH . 
W 4 HOH E 4 404 22 HOH HOH . 
W 4 HOH E 5 405 23 HOH HOH . 
W 4 HOH E 6 406 29 HOH HOH . 
W 4 HOH E 7 407 35 HOH HOH . 
W 4 HOH E 8 408 40 HOH HOH . 
W 4 HOH E 9 409 49 HOH HOH . 
W 4 HOH E 10 410 68 HOH HOH . 
W 4 HOH E 11 411 69 HOH HOH . 
X 4 HOH F 1 401 5 HOH HOH . 
X 4 HOH F 2 402 20 HOH HOH . 
X 4 HOH F 3 403 31 HOH HOH . 
X 4 HOH F 4 404 57 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C3 1GP . . . K 2 55.85 42.38 18.457 1 27.98 ? C3 1GP 301 C 1 
HETATM 2 O O3 1GP . . . K 2 54.526 44.263 18.118 1 28.47 ? O3 1GP 301 C 1 
HETATM 3 C C2 1GP . . . K 2 55.545 43.765 18.899 1 24.36 ? C2 1GP 301 C 1 
HETATM 4 O O2 1GP . . . K 2 54.698 41.628 18.524 1 33.45 ? O2 1GP 301 C 1 
HETATM 5 C C1 1GP . . . K 2 56.775 44.591 18.747 1 19.74 ? C1 1GP 301 C 1 
HETATM 6 O O1P 1GP . . . K 2 57.751 44.123 19.6 1 16.09 ? O1P 1GP 301 C 1 
HETATM 7 O O2P 1GP . . . K 2 58.263 45.354 21.737 1 19.32 ? O2P 1GP 301 C 1 
HETATM 8 O O3P 1GP . . . K 2 60.101 44.516 20.328 1 29.97 ? O3P 1GP 301 C 1 
HETATM 9 O O4P 1GP . . . K 2 58.75 46.429 19.568 1 32.09 ? O4P 1GP 301 C 1 
HETATM 10 P P 1GP . . . K 2 58.715 45.115 20.315 1 28.09 ? P 1GP 301 C 1 
HETATM 11 H H31 1GP . . . K 2 56.527 41.993 19.039 1 33.57 ? H31 1GP 301 C 1 
HETATM 12 H H32 1GP . . . K 2 56.178 42.395 17.541 1 33.57 ? H32 1GP 301 C 1 
HETATM 13 H HO3 1GP . . . K 2 53.748 43.971 18.427 1 34.17 ? HO3 1GP 301 C 1 
HETATM 14 H H2 1GP . . . K 2 55.272 43.756 19.831 1 29.23 ? H2 1GP 301 C 1 
HETATM 15 H HO2 1GP . . . K 2 54.695 41.159 19.276 1 40.14 ? HO2 1GP 301 C 1 
HETATM 16 H H11 1GP . . . K 2 57.094 44.526 17.83 1 23.69 ? H11 1GP 301 C 1 
HETATM 17 H H12 1GP . . . K 2 56.58 45.521 18.953 1 23.69 ? H12 1GP 301 C 1 
#
_model_server_stats.io_time_ms              28 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    65 
_model_server_stats.query_time_ms           369 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           17 
#