data_4MM4 # _model_server_result.job_id CV1wrR0OK5vzKarVjRMNBA _model_server_result.datetime_utc '2024-11-23 23:42:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4mm4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":603}' # _entry.id 4MM4 # _exptl.entry_id 4MM4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 329.365 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Paroxetine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.78 _cell.angle_gamma 90 _cell.entry_id 4MM4 _cell.length_a 88.424 _cell.length_b 92.085 _cell.length_c 84.772 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4MM4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,J 1 1 B,F,G,H,I,K 2 1 A,B,C,D,E,F,G,H,I,J,K 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 20 A GLY 20 1_555 C NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc2 A O ALA 22 A ALA 22 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? metalc ? metalc3 A O VAL 23 A VAL 23 1_555 C NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.655 ? metalc ? metalc4 A OD1 ASN 27 A ASN 27 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc5 A O SER 254 A SER 254 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.6 ? metalc ? metalc6 A O ALA 351 A ALA 351 1_555 C NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc7 A OG1 THR 354 A THR 354 1_555 C NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc8 A OG SER 355 A SER 355 1_555 C NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc9 D NA NA . A NA 602 1_555 J O HOH . A HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc10 B O GLY 20 B GLY 20 1_555 F NA NA . B NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc11 B O ALA 22 B ALA 22 1_555 G NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? metalc ? metalc12 B O VAL 23 B VAL 23 1_555 F NA NA . B NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.649 ? metalc ? metalc13 B OD1 ASN 27 B ASN 27 1_555 G NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? metalc ? metalc14 B O SER 254 B SER 254 1_555 G NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? metalc ? metalc15 B OD1 ASN 286 B ASN 286 1_555 G NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.187 ? metalc ? metalc16 B O ALA 351 B ALA 351 1_555 F NA NA . B NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? metalc ? metalc17 B OG1 THR 354 B THR 354 1_555 F NA NA . B NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc18 B OG SER 355 B SER 355 1_555 F NA NA . B NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? # _chem_comp.formula 'C19 H20 F N O3' _chem_comp.formula_weight 329.365 _chem_comp.id 8PR _chem_comp.mon_nstd_flag . _chem_comp.name Paroxetine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (3S,4R)-3-[(1,3-benzodioxol-5-yloxy)methyl]-4-(4-fluorophenyl)piperidine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FAA CAR 8PR sing 1 n n CAR CAB 8PR doub 2 n y CAB CAE 8PR sing 3 n y CAB HAB 8PR sing 4 n n CAR CAC 8PR sing 5 n y CAC CAF 8PR doub 6 n y CAC HAC 8PR sing 7 n n CAS CAD 8PR doub 8 n y CAD CAG 8PR sing 9 n y CAD HAD 8PR sing 10 n n CAE CAT 8PR doub 11 n y CAE HAE 8PR sing 12 n n CAF CAT 8PR sing 13 n y CAF HAF 8PR sing 14 n n CAU CAG 8PR doub 15 n y CAG HAG 8PR sing 16 n n CAH CAS 8PR sing 17 n y CAH CAV 8PR doub 18 n y CAH HAH 8PR sing 19 n n CAJ CAI 8PR sing 20 n n CAI NAN 8PR sing 21 n n CAI HAI 8PR sing 22 n n CAI HAIA 8PR sing 23 n n CAJ CAX 8PR sing 24 n n CAJ HAJ 8PR sing 25 n n CAJ HAJA 8PR sing 26 n n CAW CAK 8PR sing 27 n n NAN CAK 8PR sing 28 n n CAK HAK 8PR sing 29 n n CAK HAKA 8PR sing 30 n n OAQ CAL 8PR sing 31 n n OAP CAL 8PR sing 32 n n CAL HAL 8PR sing 33 n n CAL HALA 8PR sing 34 n n CAW CAM 8PR sing 35 n n CAM OAO 8PR sing 36 n n CAM HAM 8PR sing 37 n n CAM HAMA 8PR sing 38 n n NAN HNAN 8PR sing 39 n n OAO CAS 8PR sing 40 n n CAU OAP 8PR sing 41 n n CAV OAQ 8PR sing 42 n n CAT CAX 8PR sing 43 n n CAV CAU 8PR sing 44 n y CAX CAW 8PR sing 45 n n CAW HAW 8PR sing 46 n n CAX HAX 8PR sing 47 n n # _atom_sites.entry_id 4MM4 _atom_sites.fract_transf_matrix[1][1] 0.011309 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000946 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01086 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011838 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA A 1 601 751 NA NA . D 2 NA A 1 602 752 NA NA . E 3 8PR A 1 603 1 8PR 8PR . F 2 NA B 1 601 751 NA NA . G 2 NA B 1 602 752 NA NA . H 3 8PR B 1 603 2 8PR 8PR . I 4 CL B 1 604 1 CL CL . J 5 HOH A 1 701 1 HOH HOH . J 5 HOH A 2 702 2 HOH HOH . K 5 HOH B 1 701 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 F FAA 8PR . . . E 3 116.614 -21.766 101.95 1 49.97 ? FAA 8PR 603 A 1 HETATM 2 C CAB 8PR . . . E 3 115.799 -20.528 103.872 1 47 ? CAB 8PR 603 A 1 HETATM 3 C CAC 8PR . . . E 3 117.953 -19.899 102.758 1 53.37 ? CAC 8PR 603 A 1 HETATM 4 C CAD 8PR . . . E 3 113.846 -14.533 103.132 1 32.61 ? CAD 8PR 603 A 1 HETATM 5 C CAE 8PR . . . E 3 115.978 -19.476 104.804 1 44.4 ? CAE 8PR 603 A 1 HETATM 6 C CAF 8PR . . . E 3 118.125 -18.881 103.669 1 56.7 ? CAF 8PR 603 A 1 HETATM 7 C CAG 8PR . . . E 3 112.929 -14.039 102.178 1 34.12 ? CAG 8PR 603 A 1 HETATM 8 C CAH 8PR . . . E 3 112.036 -15.238 104.558 1 31.75 ? CAH 8PR 603 A 1 HETATM 9 C CAI 8PR . . . E 3 118.343 -16.72 107.976 1 40.62 ? CAI 8PR 603 A 1 HETATM 10 C CAJ 8PR . . . E 3 118.203 -17.808 106.944 1 41.97 ? CAJ 8PR 603 A 1 HETATM 11 C CAK 8PR . . . E 3 116.439 -15.543 107.025 1 39.35 ? CAK 8PR 603 A 1 HETATM 12 C CAL 8PR . . . E 3 109.317 -14.108 102.43 1 30.59 ? CAL 8PR 603 A 1 HETATM 13 C CAM 8PR . . . E 3 115.436 -16.252 104.856 1 37.65 ? CAM 8PR 603 A 1 HETATM 14 N NAN 8PR . . . E 3 117.05 -16.042 108.26 1 43.19 ? NAN 8PR 603 A 1 HETATM 15 O OAO 8PR . . . E 3 114.228 -15.642 105.307 1 33.72 ? OAO 8PR 603 A 1 HETATM 16 O OAP 8PR . . . E 3 110.454 -13.76 101.699 1 36.47 ? OAP 8PR 603 A 1 HETATM 17 O OAQ 8PR . . . E 3 109.665 -14.694 103.553 1 28.21 ? OAQ 8PR 603 A 1 HETATM 18 C CAR 8PR . . . E 3 116.774 -20.759 102.844 1 56.22 ? CAR 8PR 603 A 1 HETATM 19 C CAS 8PR . . . E 3 113.355 -15.145 104.333 1 31.91 ? CAS 8PR 603 A 1 HETATM 20 C CAT 8PR . . . E 3 117.147 -18.63 104.724 1 45.75 ? CAT 8PR 603 A 1 HETATM 21 C CAU 8PR . . . E 3 111.586 -14.142 102.411 1 30.71 ? CAU 8PR 603 A 1 HETATM 22 C CAV 8PR . . . E 3 111.109 -14.739 103.602 1 30.13 ? CAV 8PR 603 A 1 HETATM 23 C CAW 8PR . . . E 3 116.156 -16.712 106.11 1 40.47 ? CAW 8PR 603 A 1 HETATM 24 C CAX 8PR . . . E 3 117.417 -17.4 105.75 1 40.44 ? CAX 8PR 603 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 24 #