data_4MM5 # _model_server_result.job_id 9aLlSnAA7p4y9j2dsL1o8w _model_server_result.datetime_utc '2024-11-21 13:56:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4mm5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":603}' # _entry.id 4MM5 # _exptl.entry_id 4MM5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 306.23 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1S,4S)-4-(3,4-dichlorophenyl)-N-methyl-1,2,3,4-tetrahydronaphthalen-1-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.53 _cell.angle_gamma 90 _cell.entry_id 4MM5 _cell.length_a 89.076 _cell.length_b 87.927 _cell.length_c 81.96 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4MM5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 20 A GLY 20 1_555 B NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc2 A O ALA 22 A ALA 22 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? metalc ? metalc3 A O VAL 23 A VAL 23 1_555 B NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc4 A OD1 ASN 27 A ASN 27 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc5 A O SER 254 A SER 254 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc6 A OG SER 254 A SER 254 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? metalc ? metalc7 A OD1 ASN 286 A ASN 286 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc8 A O ALA 351 A ALA 351 1_555 B NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc9 A OG1 THR 354 A THR 354 1_555 B NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc10 A OG SER 355 A SER 355 1_555 B NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? # _chem_comp.formula 'C17 H17 Cl2 N' _chem_comp.formula_weight 306.23 _chem_comp.id SRE _chem_comp.mon_nstd_flag . _chem_comp.name (1S,4S)-4-(3,4-dichlorophenyl)-N-methyl-1,2,3,4-tetrahydronaphthalen-1-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Sertraline # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL19 C16 SRE sing 277 n n C16 C17 SRE sing 278 n y C15 C16 SRE doub 279 n y C15 C14 SRE sing 280 n y CL20 C15 SRE sing 281 n n C17 C18 SRE doub 282 n y C17 H17 SRE sing 283 n n C18 H18 SRE sing 284 n n C13 C18 SRE sing 285 n y C13 C4 SRE sing 286 n n C14 C13 SRE doub 287 n y C14 H14 SRE sing 288 n n C4 C3 SRE sing 289 n n C4 C5 SRE sing 290 n n C4 H4 SRE sing 291 n n C5 C10 SRE sing 292 n y C6 C5 SRE doub 293 n y C6 C7 SRE sing 294 n y C6 H6 SRE sing 295 n n C7 C8 SRE doub 296 n y C7 H7 SRE sing 297 n n C8 C9 SRE sing 298 n y C8 H8 SRE sing 299 n n C9 H9 SRE sing 300 n n C10 C9 SRE doub 301 n y C10 C1 SRE sing 302 n n C1 N11 SRE sing 303 n n C1 H1 SRE sing 304 n n N11 C12 SRE sing 305 n n C12 H12 SRE sing 306 n n C12 H12A SRE sing 307 n n C2 C1 SRE sing 308 n n C2 H2 SRE sing 309 n n C2 H2A SRE sing 310 n n C3 C2 SRE sing 311 n n C3 H3 SRE sing 312 n n C3 H3A SRE sing 313 n n N11 H16 SRE sing 314 n n C12 H171 SRE sing 315 n n # _atom_sites.entry_id 4MM5 _atom_sites.fract_transf_matrix[1][1] 0.011226 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001086 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011373 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012258 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 601 751 NA NA . C 2 NA A 1 602 752 NA NA . D 3 SRE A 1 603 1 SRE SRE . E 4 HOH A 1 701 1 HOH HOH . E 4 HOH A 2 702 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CL CL19 SRE . . . D 3 180.461 -14.379 96.877 1 48.35 ? CL19 SRE 603 A 1 HETATM 2 C C16 SRE . . . D 3 181.112 -15.292 98.184 1 32.67 ? C16 SRE 603 A 1 HETATM 3 C C15 SRE . . . D 3 180.282 -15.87 99.006 1 32.67 ? C15 SRE 603 A 1 HETATM 4 CL CL20 SRE . . . D 3 178.56 -15.709 98.771 1 40.86 ? CL20 SRE 603 A 1 HETATM 5 C C17 SRE . . . D 3 182.43 -15.369 98.293 1 31.19 ? C17 SRE 603 A 1 HETATM 6 C C18 SRE . . . D 3 182.969 -16.115 99.364 1 33.94 ? C18 SRE 603 A 1 HETATM 7 C C13 SRE . . . D 3 182.084 -16.789 100.334 1 27.45 ? C13 SRE 603 A 1 HETATM 8 C C14 SRE . . . D 3 180.716 -16.599 100.035 1 25.24 ? C14 SRE 603 A 1 HETATM 9 C C4 SRE . . . D 3 182.6 -17.655 101.527 1 37.33 ? C4 SRE 603 A 1 HETATM 10 C C5 SRE . . . D 3 183.569 -18.54 100.999 1 42.21 ? C5 SRE 603 A 1 HETATM 11 C C6 SRE . . . D 3 183.323 -19.28 99.673 1 33.32 ? C6 SRE 603 A 1 HETATM 12 C C7 SRE . . . D 3 184.206 -20.139 99.139 1 32.69 ? C7 SRE 603 A 1 HETATM 13 C C8 SRE . . . D 3 185.257 -20.403 99.637 1 32.79 ? C8 SRE 603 A 1 HETATM 14 C C9 SRE . . . D 3 185.641 -19.925 100.695 1 38.05 ? C9 SRE 603 A 1 HETATM 15 C C10 SRE . . . D 3 184.901 -19.011 101.434 1 48.57 ? C10 SRE 603 A 1 HETATM 16 C C1 SRE . . . D 3 185.385 -18.378 102.758 1 46.62 ? C1 SRE 603 A 1 HETATM 17 N N11 SRE . . . D 3 186.703 -18.13 102.601 1 44.15 ? N11 SRE 603 A 1 HETATM 18 C C12 SRE . . . D 3 186.902 -16.828 102.004 1 36.52 ? C12 SRE 603 A 1 HETATM 19 C C2 SRE . . . D 3 184.72 -16.939 103.051 1 38.4 ? C2 SRE 603 A 1 HETATM 20 C C3 SRE . . . D 3 183.219 -16.819 102.585 1 36.4 ? C3 SRE 603 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 20 #