data_4MM6 # _model_server_result.job_id uirkAsAelnNjoKQwjAsDIg _model_server_result.datetime_utc '2024-11-23 06:56:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4mm6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":603}' # _entry.id 4MM6 # _exptl.entry_id 4MM6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 297.415 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3S)-N-methyl-3-(naphthalen-1-yloxy)-3-(thiophen-2-yl)propan-1-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.84 _cell.angle_gamma 90 _cell.entry_id 4MM6 _cell.length_a 87.897 _cell.length_b 88.383 _cell.length_c 81.311 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4MM6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 20 A GLY 20 1_555 B NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc2 A O ALA 22 A ALA 22 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc3 A O VAL 23 A VAL 23 1_555 B NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? metalc ? metalc4 A OD1 ASN 27 A ASN 27 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc5 A O SER 254 A SER 254 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc6 A OG SER 254 A SER 254 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc7 A OD1 ASN 286 A ASN 286 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc8 A O ALA 351 A ALA 351 1_555 B NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.941 ? metalc ? metalc9 A OG1 THR 354 A THR 354 1_555 B NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc10 A OG SER 355 A SER 355 1_555 B NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? metalc ? metalc11 C NA NA . A NA 602 1_555 E O HOH . A HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.017 ? # _chem_comp.formula 'C18 H19 N O S' _chem_comp.formula_weight 297.415 _chem_comp.id 29E _chem_comp.mon_nstd_flag . _chem_comp.name (3S)-N-methyl-3-(naphthalen-1-yloxy)-3-(thiophen-2-yl)propan-1-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Duloxetine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7 C6 29E doub 1 n y C7 C8 29E sing 2 n y C6 C5 29E sing 3 n y S C17 29E sing 4 n y S C14 29E sing 5 n y C9 C8 29E doub 6 n y C9 C10 29E sing 7 n y C17 C16 29E doub 8 n y C8 C13 29E sing 9 n y C5 C4 29E doub 10 n y C10 C11 29E doub 11 n y C13 C4 29E sing 12 n y C13 C12 29E doub 13 n y C4 O 29E sing 14 n n C16 C15 29E sing 15 n y C14 C3 29E sing 16 n n C14 C15 29E doub 17 n y C11 C12 29E sing 18 n y C3 O 29E sing 19 n n C3 C2 29E sing 20 n n C2 C1 29E sing 21 n n C1 N 29E sing 22 n n C N 29E sing 23 n n C H1 29E sing 24 n n C H2 29E sing 25 n n C H3 29E sing 26 n n N H4 29E sing 27 n n C1 H6 29E sing 28 n n C1 H7 29E sing 29 n n C2 H8 29E sing 30 n n C2 H9 29E sing 31 n n C3 H10 29E sing 32 n n C17 H11 29E sing 33 n n C16 H12 29E sing 34 n n C15 H13 29E sing 35 n n C12 H14 29E sing 36 n n C11 H15 29E sing 37 n n C10 H16 29E sing 38 n n C9 H17 29E sing 39 n n C7 H18 29E sing 40 n n C6 H19 29E sing 41 n n C5 H20 29E sing 42 n n # _atom_sites.entry_id 4MM6 _atom_sites.fract_transf_matrix[1][1] 0.011377 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000963 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011314 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012342 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 601 751 NA NA . C 2 NA A 1 602 752 NA NA . D 3 29E A 1 603 1 29E DUM . E 4 HOH A 1 701 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C 29E . . . D 3 179.031 -12.173 183.091 1 46.72 ? C 29E 603 A 1 HETATM 2 N N 29E . . . D 3 177.927 -11.286 183.405 1 50.01 ? N 29E 603 A 1 HETATM 3 C C1 29E . . . D 3 176.732 -11.296 182.572 1 45.54 ? C1 29E 603 A 1 HETATM 4 C C2 29E . . . D 3 176.694 -12.574 181.742 1 42.33 ? C2 29E 603 A 1 HETATM 5 C C3 29E . . . D 3 176.065 -12.323 180.392 1 41.57 ? C3 29E 603 A 1 HETATM 6 C C14 29E . . . D 3 175.712 -13.644 179.834 1 42.24 ? C14 29E 603 A 1 HETATM 7 S S 29E . . . D 3 176.028 -14.137 178.216 1 50.34 ? S 29E 603 A 1 HETATM 8 C C17 29E . . . D 3 175.336 -15.716 178.441 1 46.14 ? C17 29E 603 A 1 HETATM 9 C C16 29E . . . D 3 174.892 -15.786 179.768 1 44.66 ? C16 29E 603 A 1 HETATM 10 C C15 29E . . . D 3 175.095 -14.642 180.562 1 38.36 ? C15 29E 603 A 1 HETATM 11 O O 29E . . . D 3 174.888 -11.579 180.663 1 38.06 ? O 29E 603 A 1 HETATM 12 C C4 29E . . . D 3 174.289 -10.878 179.663 1 32.88 ? C4 29E 603 A 1 HETATM 13 C C13 29E . . . D 3 172.807 -10.799 179.582 1 30.33 ? C13 29E 603 A 1 HETATM 14 C C12 29E . . . D 3 171.97 -11.425 180.495 1 26.77 ? C12 29E 603 A 1 HETATM 15 C C11 29E . . . D 3 170.593 -11.29 180.319 1 28.7 ? C11 29E 603 A 1 HETATM 16 C C10 29E . . . D 3 170.034 -10.552 179.271 1 25.3 ? C10 29E 603 A 1 HETATM 17 C C9 29E . . . D 3 170.839 -9.914 178.335 1 27.33 ? C9 29E 603 A 1 HETATM 18 C C8 29E . . . D 3 172.217 -10.018 178.465 1 32.23 ? C8 29E 603 A 1 HETATM 19 C C7 29E . . . D 3 173.067 -9.402 177.556 1 34.62 ? C7 29E 603 A 1 HETATM 20 C C6 29E . . . D 3 174.455 -9.506 177.678 1 35.73 ? C6 29E 603 A 1 HETATM 21 C C5 29E . . . D 3 175.063 -10.227 178.709 1 34.43 ? C5 29E 603 A 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 21 #