data_4MMA # _model_server_result.job_id M5aWBX-M0xH8DIcFW5YGIg _model_server_result.datetime_utc '2024-10-13 19:19:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4mma # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":603}' # _entry.id 4MMA # _exptl.entry_id 4MMA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 314.852 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-(3-CHLORO-5H-DIBENZO[B,F]AZEPIN-5-YL)-N,N-DIMETHYLPROPAN-1-AMINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.41 _cell.angle_gamma 90 _cell.entry_id 4MMA _cell.length_a 88.52 _cell.length_b 88.811 _cell.length_c 81.225 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4MMA _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 20 A GLY 20 1_555 B NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc2 A O ALA 22 A ALA 22 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.653 ? metalc ? metalc3 A O VAL 23 A VAL 23 1_555 B NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc4 A OD1 ASP 24 A ASP 24 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc5 A OD2 ASP 24 A ASP 24 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.049 ? metalc ? metalc6 A OD1 ASN 27 A ASN 27 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc7 A O SER 254 A SER 254 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc8 A OG SER 254 A SER 254 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? metalc ? metalc9 A OD1 ASN 286 A ASN 286 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc10 A O ALA 351 A ALA 351 1_555 B NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc11 A OG1 THR 354 A THR 354 1_555 B NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc12 A OG SER 355 A SER 355 1_555 B NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? # _chem_comp.formula 'C19 H23 Cl N2' _chem_comp.formula_weight 314.852 _chem_comp.id CXX _chem_comp.mon_nstd_flag . _chem_comp.name 3-(3-CHLORO-5H-DIBENZO[B,F]AZEPIN-5-YL)-N,N-DIMETHYLPROPAN-1-AMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3-chloro-5-(3-(dimethylamino)propyl)-10,11-dihydro-5H-dibenz[b,f]azepine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C14 CXX doub 70 n y C1 C2 CXX sing 71 n y C1 H1 CXX sing 72 n n C2 CL2 CXX sing 73 n n C2 C3 CXX doub 74 n y C3 C4 CXX sing 75 n y C3 H3 CXX sing 76 n n C4 C13 CXX doub 77 n y C4 H4 CXX sing 78 n n C5 C13 CXX sing 79 n n C5 C6 CXX sing 80 n n C5 H51 CXX sing 81 n n C6 C12 CXX sing 82 n n C6 H61 CXX sing 83 n n C8 C9 CXX doub 84 n y C8 C7 CXX sing 85 n y C8 H8 CXX sing 86 n n C9 C10 CXX sing 87 n y C9 H9 CXX sing 88 n n C10 C11 CXX doub 89 n y C10 H10 CXX sing 90 n n C11 N1 CXX sing 91 n n C11 C12 CXX sing 92 n y C13 C14 CXX sing 93 n y C14 N1 CXX sing 94 n n C17 N2 CXX sing 95 n n C17 C16 CXX sing 96 n n C17 H171 CXX sing 97 n n C17 H172 CXX sing 98 n n C18 N2 CXX sing 99 n n C18 H181 CXX sing 100 n n C18 H182 CXX sing 101 n n C18 H183 CXX sing 102 n n C7 C12 CXX doub 103 n y C7 H7 CXX sing 104 n n C15 C16 CXX sing 105 n n C15 N1 CXX sing 106 n n C15 H151 CXX sing 107 n n C15 H152 CXX sing 108 n n C16 H161 CXX sing 109 n n C16 H162 CXX sing 110 n n C19 N2 CXX sing 111 n n C19 H191 CXX sing 112 n n C19 H192 CXX sing 113 n n C19 H193 CXX sing 114 n n C5 H52 CXX sing 115 n n C6 H62 CXX sing 116 n n # _atom_sites.entry_id 4MMA _atom_sites.fract_transf_matrix[1][1] 0.011297 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000871 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01126 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012348 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 601 751 NA NA . C 2 NA A 1 602 752 NA NA . D 3 CXX A 1 603 1 CXX CXX . E 4 HOH A 1 701 1 HOH HOH . E 4 HOH A 2 702 2 HOH HOH . E 4 HOH A 3 703 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CXX . . . D 3 162.283 -3.417 341.526 1 103.02 ? C1 CXX 603 A 1 HETATM 2 C C2 CXX . . . D 3 161.442 -2.497 340.858 1 113.09 ? C2 CXX 603 A 1 HETATM 3 C C3 CXX . . . D 3 161.917 -1.641 339.835 1 108.4 ? C3 CXX 603 A 1 HETATM 4 C C4 CXX . . . D 3 163.262 -1.713 339.461 1 106.5 ? C4 CXX 603 A 1 HETATM 5 C C5 CXX . . . D 3 165.562 -2.729 339.714 1 96.14 ? C5 CXX 603 A 1 HETATM 6 C C6 CXX . . . D 3 165.763 -4.042 338.982 1 107.73 ? C6 CXX 603 A 1 HETATM 7 C C8 CXX . . . D 3 166.611 -7.569 339.996 1 99.56 ? C8 CXX 603 A 1 HETATM 8 C C9 CXX . . . D 3 166.024 -7.738 341.254 1 95.31 ? C9 CXX 603 A 1 HETATM 9 C C10 CXX . . . D 3 165.317 -6.68 341.85 1 98.22 ? C10 CXX 603 A 1 HETATM 10 C C11 CXX . . . D 3 165.161 -5.462 341.177 1 100.93 ? C11 CXX 603 A 1 HETATM 11 C C13 CXX . . . D 3 164.118 -2.63 340.094 1 92.69 ? C13 CXX 603 A 1 HETATM 12 C C14 CXX . . . D 3 163.613 -3.531 341.151 1 101.44 ? C14 CXX 603 A 1 HETATM 13 C C17 CXX . . . D 3 166.307 -2.728 344.305 1 103.15 ? C17 CXX 603 A 1 HETATM 14 C C18 CXX . . . D 3 165.993 -4.272 346.28 1 115.66 ? C18 CXX 603 A 1 HETATM 15 C C7 CXX . . . D 3 166.5 -6.36 339.304 1 104.03 ? C7 CXX 603 A 1 HETATM 16 C C12 CXX . . . D 3 165.813 -5.282 339.854 1 106.16 ? C12 CXX 603 A 1 HETATM 17 C C15 CXX . . . D 3 164.695 -4.29 343.206 1 100.85 ? C15 CXX 603 A 1 HETATM 18 C C16 CXX . . . D 3 165.895 -3.386 343.003 1 108.46 ? C16 CXX 603 A 1 HETATM 19 C C19 CXX . . . D 3 167.915 -4.662 344.622 1 100.59 ? C19 CXX 603 A 1 HETATM 20 N N1 CXX . . . D 3 164.458 -4.438 341.799 1 97.11 ? N1 CXX 603 A 1 HETATM 21 N N2 CXX . . . D 3 166.738 -3.889 345.078 1 107.07 ? N2 CXX 603 A 1 HETATM 22 CL CL2 CXX . . . D 3 159.713 -2.46 341.443 1 201.11 ? CL2 CXX 603 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 45 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #