data_4MMB # _model_server_result.job_id EzMi4jaojBe76UfG72uYOw _model_server_result.datetime_utc '2024-10-13 19:22:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4mmb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":603}' # _entry.id 4MMB # _exptl.entry_id 4MMB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 306.23 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1S,4S)-4-(3,4-dichlorophenyl)-N-methyl-1,2,3,4-tetrahydronaphthalen-1-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.51 _cell.angle_gamma 90 _cell.entry_id 4MMB _cell.length_a 86.189 _cell.length_b 87.303 _cell.length_c 81.014 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4MMB _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 20 A GLY 20 1_555 B NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc2 A O ALA 22 A ALA 22 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc3 A O VAL 23 A VAL 23 1_555 B NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc4 A OD1 ASN 27 A ASN 27 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? metalc ? metalc5 A O SER 254 A SER 254 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc6 A OG SER 254 A SER 254 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? metalc ? metalc7 A OD1 ASN 286 A ASN 286 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc8 A O ALA 351 A ALA 351 1_555 B NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc9 A OG1 THR 354 A THR 354 1_555 B NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc10 A OG SER 355 A SER 355 1_555 B NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc11 C NA NA . A NA 602 1_555 G O HOH . A HOH 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? # _chem_comp.formula 'C17 H17 Cl2 N' _chem_comp.formula_weight 306.23 _chem_comp.id SRE _chem_comp.mon_nstd_flag . _chem_comp.name (1S,4S)-4-(3,4-dichlorophenyl)-N-methyl-1,2,3,4-tetrahydronaphthalen-1-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Sertraline # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL19 C16 SRE sing 325 n n C16 C17 SRE sing 326 n y C15 C16 SRE doub 327 n y C15 C14 SRE sing 328 n y CL20 C15 SRE sing 329 n n C17 C18 SRE doub 330 n y C17 H17 SRE sing 331 n n C18 H18 SRE sing 332 n n C13 C18 SRE sing 333 n y C13 C4 SRE sing 334 n n C14 C13 SRE doub 335 n y C14 H14 SRE sing 336 n n C4 C3 SRE sing 337 n n C4 C5 SRE sing 338 n n C4 H4 SRE sing 339 n n C5 C10 SRE sing 340 n y C6 C5 SRE doub 341 n y C6 C7 SRE sing 342 n y C6 H6 SRE sing 343 n n C7 C8 SRE doub 344 n y C7 H7 SRE sing 345 n n C8 C9 SRE sing 346 n y C8 H8 SRE sing 347 n n C9 H9 SRE sing 348 n n C10 C9 SRE doub 349 n y C10 C1 SRE sing 350 n n C1 N11 SRE sing 351 n n C1 H1 SRE sing 352 n n N11 C12 SRE sing 353 n n C12 H12 SRE sing 354 n n C12 H12A SRE sing 355 n n C2 C1 SRE sing 356 n n C2 H2 SRE sing 357 n n C2 H2A SRE sing 358 n n C3 C2 SRE sing 359 n n C3 H3 SRE sing 360 n n C3 H3A SRE sing 361 n n N11 H16 SRE sing 362 n n C12 H171 SRE sing 363 n n # _atom_sites.entry_id 4MMB _atom_sites.fract_transf_matrix[1][1] 0.011602 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000915 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011454 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012382 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 601 751 NA NA . C 2 NA A 1 602 752 NA NA . D 3 SRE A 1 603 1 SRE SRE . E 4 BOG A 1 604 1 BOG BOG . F 4 BOG A 1 605 2 BOG BOG . G 5 HOH A 1 701 1 HOH HOH . G 5 HOH A 2 702 2 HOH HOH . G 5 HOH A 3 703 3 HOH HOH . G 5 HOH A 4 704 4 HOH HOH . G 5 HOH A 5 705 5 HOH HOH . G 5 HOH A 6 706 6 HOH HOH . G 5 HOH A 7 707 8 HOH HOH . G 5 HOH A 8 708 9 HOH HOH . G 5 HOH A 9 709 10 HOH HOH . G 5 HOH A 10 710 11 HOH HOH . G 5 HOH A 11 711 12 HOH HOH . G 5 HOH A 12 712 13 HOH HOH . G 5 HOH A 13 713 14 HOH HOH . G 5 HOH A 14 714 15 HOH HOH . G 5 HOH A 15 715 16 HOH HOH . G 5 HOH A 16 716 17 HOH HOH . G 5 HOH A 17 717 18 HOH HOH . G 5 HOH A 18 718 19 HOH HOH . G 5 HOH A 19 719 20 HOH HOH . G 5 HOH A 20 720 21 HOH HOH . G 5 HOH A 21 721 22 HOH HOH . G 5 HOH A 22 722 23 HOH HOH . G 5 HOH A 23 723 24 HOH HOH . G 5 HOH A 24 724 25 HOH HOH . G 5 HOH A 25 725 26 HOH HOH . G 5 HOH A 26 726 27 HOH HOH . G 5 HOH A 27 727 28 HOH HOH . G 5 HOH A 28 728 29 HOH HOH . G 5 HOH A 29 729 30 HOH HOH . G 5 HOH A 30 730 31 HOH HOH . G 5 HOH A 31 731 32 HOH HOH . G 5 HOH A 32 732 33 HOH HOH . G 5 HOH A 33 733 34 HOH HOH . G 5 HOH A 34 734 35 HOH HOH . G 5 HOH A 35 735 36 HOH HOH . G 5 HOH A 36 736 37 HOH HOH . G 5 HOH A 37 737 38 HOH HOH . G 5 HOH A 38 738 39 HOH HOH . G 5 HOH A 39 739 40 HOH HOH . G 5 HOH A 40 740 41 HOH HOH . G 5 HOH A 41 741 43 HOH HOH . G 5 HOH A 42 742 44 HOH HOH . G 5 HOH A 43 743 45 HOH HOH . G 5 HOH A 44 744 46 HOH HOH . G 5 HOH A 45 745 47 HOH HOH . G 5 HOH A 46 746 48 HOH HOH . G 5 HOH A 47 747 49 HOH HOH . G 5 HOH A 48 748 50 HOH HOH . G 5 HOH A 49 749 51 HOH HOH . G 5 HOH A 50 750 52 HOH HOH . G 5 HOH A 51 751 53 HOH HOH . G 5 HOH A 52 752 54 HOH HOH . G 5 HOH A 53 753 55 HOH HOH . G 5 HOH A 54 754 56 HOH HOH . G 5 HOH A 55 755 57 HOH HOH . G 5 HOH A 56 756 58 HOH HOH . G 5 HOH A 57 757 59 HOH HOH . G 5 HOH A 58 758 60 HOH HOH . G 5 HOH A 59 759 61 HOH HOH . G 5 HOH A 60 760 62 HOH HOH . G 5 HOH A 61 761 63 HOH HOH . G 5 HOH A 62 762 64 HOH HOH . G 5 HOH A 63 763 65 HOH HOH . G 5 HOH A 64 764 66 HOH HOH . G 5 HOH A 65 765 67 HOH HOH . G 5 HOH A 66 766 68 HOH HOH . G 5 HOH A 67 767 70 HOH HOH . G 5 HOH A 68 768 71 HOH HOH . G 5 HOH A 69 769 72 HOH HOH . G 5 HOH A 70 770 73 HOH HOH . G 5 HOH A 71 771 74 HOH HOH . G 5 HOH A 72 772 75 HOH HOH . G 5 HOH A 73 773 76 HOH HOH . G 5 HOH A 74 774 77 HOH HOH . G 5 HOH A 75 775 78 HOH HOH . G 5 HOH A 76 776 79 HOH HOH . G 5 HOH A 77 777 80 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CL CL19 SRE . . . D 3 83.523 -16.604 176.543 1 35.82 ? CL19 SRE 603 A 1 HETATM 2 C C16 SRE . . . D 3 84.342 -17.514 177.756 1 34.19 ? C16 SRE 603 A 1 HETATM 3 C C15 SRE . . . D 3 83.628 -18.065 178.68 1 31.53 ? C15 SRE 603 A 1 HETATM 4 CL CL20 SRE . . . D 3 81.895 -17.86 178.693 1 44.09 ? CL20 SRE 603 A 1 HETATM 5 C C17 SRE . . . D 3 85.67 -17.63 177.692 1 32.51 ? C17 SRE 603 A 1 HETATM 6 C C18 SRE . . . D 3 86.34 -18.386 178.687 1 29.29 ? C18 SRE 603 A 1 HETATM 7 C C13 SRE . . . D 3 85.576 -19.036 179.771 1 31.37 ? C13 SRE 603 A 1 HETATM 8 C C14 SRE . . . D 3 84.188 -18.792 179.651 1 29.08 ? C14 SRE 603 A 1 HETATM 9 C C4 SRE . . . D 3 86.213 -19.899 180.904 1 39.44 ? C4 SRE 603 A 1 HETATM 10 C C5 SRE . . . D 3 86.849 -20.964 180.229 1 35.13 ? C5 SRE 603 A 1 HETATM 11 C C6 SRE . . . D 3 86.252 -21.649 178.974 1 35.09 ? C6 SRE 603 A 1 HETATM 12 C C7 SRE . . . D 3 86.852 -22.668 178.314 1 38.33 ? C7 SRE 603 A 1 HETATM 13 C C8 SRE . . . D 3 87.906 -23.119 178.652 1 44.89 ? C8 SRE 603 A 1 HETATM 14 C C9 SRE . . . D 3 88.539 -22.719 179.605 1 39.74 ? C9 SRE 603 A 1 HETATM 15 C C10 SRE . . . D 3 88.116 -21.683 180.425 1 39.11 ? C10 SRE 603 A 1 HETATM 16 C C1 SRE . . . D 3 88.94 -21.192 181.647 1 37.02 ? C1 SRE 603 A 1 HETATM 17 N N11 SRE . . . D 3 90.212 -21.118 181.223 1 40.46 ? N11 SRE 603 A 1 HETATM 18 C C12 SRE . . . D 3 90.279 -20.022 180.307 1 37.49 ? C12 SRE 603 A 1 HETATM 19 C C2 SRE . . . D 3 88.574 -19.707 182.194 1 42.38 ? C2 SRE 603 A 1 HETATM 20 C C3 SRE . . . D 3 87.262 -19.092 181.578 1 34.86 ? C3 SRE 603 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #