data_4MMB # _model_server_result.job_id dnyzyj3hEj0nXA7t7GjvzQ _model_server_result.datetime_utc '2024-11-23 06:52:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4mmb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":605}' # _entry.id 4MMB # _exptl.entry_id 4MMB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.51 _cell.angle_gamma 90 _cell.entry_id 4MMB _cell.length_a 86.189 _cell.length_b 87.303 _cell.length_c 81.014 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4MMB _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 20 A GLY 20 1_555 B NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc2 A O ALA 22 A ALA 22 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc3 A O VAL 23 A VAL 23 1_555 B NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc4 A OD1 ASN 27 A ASN 27 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? metalc ? metalc5 A O SER 254 A SER 254 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc6 A OG SER 254 A SER 254 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? metalc ? metalc7 A OD1 ASN 286 A ASN 286 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc8 A O ALA 351 A ALA 351 1_555 B NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc9 A OG1 THR 354 A THR 354 1_555 B NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc10 A OG SER 355 A SER 355 1_555 B NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc11 C NA NA . A NA 602 1_555 G O HOH . A HOH 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 70 n n C1 C2 BOG sing 71 n n C1 O5 BOG sing 72 n n C1 H1 BOG sing 73 n n O1 C1' BOG sing 74 n n C2 O2 BOG sing 75 n n C2 C3 BOG sing 76 n n C2 H2 BOG sing 77 n n O2 HO2 BOG sing 78 n n C3 O3 BOG sing 79 n n C3 C4 BOG sing 80 n n C3 H3 BOG sing 81 n n O3 HO3 BOG sing 82 n n C4 O4 BOG sing 83 n n C4 C5 BOG sing 84 n n C4 H4 BOG sing 85 n n O4 HO4 BOG sing 86 n n C5 O5 BOG sing 87 n n C5 C6 BOG sing 88 n n C5 H5 BOG sing 89 n n C6 O6 BOG sing 90 n n C6 H61 BOG sing 91 n n C6 H62 BOG sing 92 n n O6 HO6 BOG sing 93 n n C1' C2' BOG sing 94 n n C1' "H1'1" BOG sing 95 n n C1' "H1'2" BOG sing 96 n n C2' C3' BOG sing 97 n n C2' "H2'1" BOG sing 98 n n C2' "H2'2" BOG sing 99 n n C3' C4' BOG sing 100 n n C3' "H3'1" BOG sing 101 n n C3' "H3'2" BOG sing 102 n n C4' C5' BOG sing 103 n n C4' "H4'1" BOG sing 104 n n C4' "H4'2" BOG sing 105 n n C5' C6' BOG sing 106 n n C5' "H5'1" BOG sing 107 n n C5' "H5'2" BOG sing 108 n n C6' C7' BOG sing 109 n n C6' "H6'1" BOG sing 110 n n C6' "H6'2" BOG sing 111 n n C7' C8' BOG sing 112 n n C7' "H7'1" BOG sing 113 n n C7' "H7'2" BOG sing 114 n n C8' "H8'1" BOG sing 115 n n C8' "H8'2" BOG sing 116 n n C8' "H8'3" BOG sing 117 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 4MMB _atom_sites.fract_transf_matrix[1][1] 0.011602 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000915 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011454 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012382 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 601 751 NA NA . C 2 NA A 1 602 752 NA NA . D 3 SRE A 1 603 1 SRE SRE . E 4 BOG A 1 604 1 BOG BOG . F 4 BOG A 1 605 2 BOG BOG . G 5 HOH A 1 701 1 HOH HOH . G 5 HOH A 2 702 2 HOH HOH . G 5 HOH A 3 703 3 HOH HOH . G 5 HOH A 4 704 4 HOH HOH . G 5 HOH A 5 705 5 HOH HOH . G 5 HOH A 6 706 6 HOH HOH . G 5 HOH A 7 707 8 HOH HOH . G 5 HOH A 8 708 9 HOH HOH . G 5 HOH A 9 709 10 HOH HOH . G 5 HOH A 10 710 11 HOH HOH . G 5 HOH A 11 711 12 HOH HOH . G 5 HOH A 12 712 13 HOH HOH . G 5 HOH A 13 713 14 HOH HOH . G 5 HOH A 14 714 15 HOH HOH . G 5 HOH A 15 715 16 HOH HOH . G 5 HOH A 16 716 17 HOH HOH . G 5 HOH A 17 717 18 HOH HOH . G 5 HOH A 18 718 19 HOH HOH . G 5 HOH A 19 719 20 HOH HOH . G 5 HOH A 20 720 21 HOH HOH . G 5 HOH A 21 721 22 HOH HOH . G 5 HOH A 22 722 23 HOH HOH . G 5 HOH A 23 723 24 HOH HOH . G 5 HOH A 24 724 25 HOH HOH . G 5 HOH A 25 725 26 HOH HOH . G 5 HOH A 26 726 27 HOH HOH . G 5 HOH A 27 727 28 HOH HOH . G 5 HOH A 28 728 29 HOH HOH . G 5 HOH A 29 729 30 HOH HOH . G 5 HOH A 30 730 31 HOH HOH . G 5 HOH A 31 731 32 HOH HOH . G 5 HOH A 32 732 33 HOH HOH . G 5 HOH A 33 733 34 HOH HOH . G 5 HOH A 34 734 35 HOH HOH . G 5 HOH A 35 735 36 HOH HOH . G 5 HOH A 36 736 37 HOH HOH . G 5 HOH A 37 737 38 HOH HOH . G 5 HOH A 38 738 39 HOH HOH . G 5 HOH A 39 739 40 HOH HOH . G 5 HOH A 40 740 41 HOH HOH . G 5 HOH A 41 741 43 HOH HOH . G 5 HOH A 42 742 44 HOH HOH . G 5 HOH A 43 743 45 HOH HOH . G 5 HOH A 44 744 46 HOH HOH . G 5 HOH A 45 745 47 HOH HOH . G 5 HOH A 46 746 48 HOH HOH . G 5 HOH A 47 747 49 HOH HOH . G 5 HOH A 48 748 50 HOH HOH . G 5 HOH A 49 749 51 HOH HOH . G 5 HOH A 50 750 52 HOH HOH . G 5 HOH A 51 751 53 HOH HOH . G 5 HOH A 52 752 54 HOH HOH . G 5 HOH A 53 753 55 HOH HOH . G 5 HOH A 54 754 56 HOH HOH . G 5 HOH A 55 755 57 HOH HOH . G 5 HOH A 56 756 58 HOH HOH . G 5 HOH A 57 757 59 HOH HOH . G 5 HOH A 58 758 60 HOH HOH . G 5 HOH A 59 759 61 HOH HOH . G 5 HOH A 60 760 62 HOH HOH . G 5 HOH A 61 761 63 HOH HOH . G 5 HOH A 62 762 64 HOH HOH . G 5 HOH A 63 763 65 HOH HOH . G 5 HOH A 64 764 66 HOH HOH . G 5 HOH A 65 765 67 HOH HOH . G 5 HOH A 66 766 68 HOH HOH . G 5 HOH A 67 767 70 HOH HOH . G 5 HOH A 68 768 71 HOH HOH . G 5 HOH A 69 769 72 HOH HOH . G 5 HOH A 70 770 73 HOH HOH . G 5 HOH A 71 771 74 HOH HOH . G 5 HOH A 72 772 75 HOH HOH . G 5 HOH A 73 773 76 HOH HOH . G 5 HOH A 74 774 77 HOH HOH . G 5 HOH A 75 775 78 HOH HOH . G 5 HOH A 76 776 79 HOH HOH . G 5 HOH A 77 777 80 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . . . F 4 63.145 -37.064 165.832 1 56.1 ? C1 BOG 605 A 1 HETATM 2 O O1 BOG . . . F 4 63.596 -36.007 166.661 1 53.46 ? O1 BOG 605 A 1 HETATM 3 C C2 BOG . . . F 4 62.788 -38.336 166.593 1 54.87 ? C2 BOG 605 A 1 HETATM 4 O O2 BOG . . . F 4 63.907 -38.897 167.228 1 74.2 ? O2 BOG 605 A 1 HETATM 5 C C3 BOG . . . F 4 62.3 -39.325 165.569 1 60.82 ? C3 BOG 605 A 1 HETATM 6 O O3 BOG . . . F 4 62.133 -40.625 166.087 1 65.61 ? O3 BOG 605 A 1 HETATM 7 C C4 BOG . . . F 4 61.069 -38.737 164.949 1 52.04 ? C4 BOG 605 A 1 HETATM 8 O O4 BOG . . . F 4 60.423 -39.64 164.099 1 65.88 ? O4 BOG 605 A 1 HETATM 9 C C5 BOG . . . F 4 61.557 -37.536 164.172 1 57.68 ? C5 BOG 605 A 1 HETATM 10 O O5 BOG . . . F 4 62.036 -36.565 165.095 1 64.02 ? O5 BOG 605 A 1 HETATM 11 C C6 BOG . . . F 4 60.363 -36.918 163.471 1 49.12 ? C6 BOG 605 A 1 HETATM 12 O O6 BOG . . . F 4 60.121 -37.535 162.221 1 51.06 ? O6 BOG 605 A 1 HETATM 13 C C1' BOG . . . F 4 64.82 -36.286 167.308 1 47.42 ? C1' BOG 605 A 1 HETATM 14 C C2' BOG . . . F 4 65.271 -35.109 168.14 1 49.57 ? C2' BOG 605 A 1 HETATM 15 C C3' BOG . . . F 4 66.186 -34.258 167.292 1 49.95 ? C3' BOG 605 A 1 HETATM 16 C C4' BOG . . . F 4 67.564 -34.114 167.899 1 41.76 ? C4' BOG 605 A 1 HETATM 17 C C5' BOG . . . F 4 68.164 -32.878 167.274 1 40.35 ? C5' BOG 605 A 1 HETATM 18 C C6' BOG . . . F 4 69.49 -33.209 166.636 1 42.19 ? C6' BOG 605 A 1 HETATM 19 C C7' BOG . . . F 4 70.137 -31.914 166.21 1 40.54 ? C7' BOG 605 A 1 HETATM 20 C C8' BOG . . . F 4 71.632 -32.043 166.389 1 41.4 ? C8' BOG 605 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 20 #