data_4MMC # _model_server_result.job_id 4oIqC1mnvgEnoPeExdwmYA _model_server_result.datetime_utc '2024-10-13 19:21:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4mmc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":605}' # _entry.id 4MMC # _exptl.entry_id 4MMC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.71 _cell.angle_gamma 90 _cell.entry_id 4MMC _cell.length_a 87.669 _cell.length_b 87.042 _cell.length_c 81.368 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4MMC _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 20 A GLY 20 1_555 B NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc2 A O ALA 22 A ALA 22 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc3 A O VAL 23 A VAL 23 1_555 B NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc4 A OD1 ASN 27 A ASN 27 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc5 A O SER 254 A SER 254 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc6 A OG SER 254 A SER 254 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc7 A OD1 ASN 286 A ASN 286 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc8 A O ALA 351 A ALA 351 1_555 B NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc9 A OG1 THR 354 A THR 354 1_555 B NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc10 A OG SER 355 A SER 355 1_555 B NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc11 C NA NA . A NA 602 1_555 H O HOH . A HOH 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 115 n n C1 C2 BOG sing 116 n n C1 O5 BOG sing 117 n n C1 H1 BOG sing 118 n n O1 C1' BOG sing 119 n n C2 O2 BOG sing 120 n n C2 C3 BOG sing 121 n n C2 H2 BOG sing 122 n n O2 HO2 BOG sing 123 n n C3 O3 BOG sing 124 n n C3 C4 BOG sing 125 n n C3 H3 BOG sing 126 n n O3 HO3 BOG sing 127 n n C4 O4 BOG sing 128 n n C4 C5 BOG sing 129 n n C4 H4 BOG sing 130 n n O4 HO4 BOG sing 131 n n C5 O5 BOG sing 132 n n C5 C6 BOG sing 133 n n C5 H5 BOG sing 134 n n C6 O6 BOG sing 135 n n C6 H61 BOG sing 136 n n C6 H62 BOG sing 137 n n O6 HO6 BOG sing 138 n n C1' C2' BOG sing 139 n n C1' "H1'1" BOG sing 140 n n C1' "H1'2" BOG sing 141 n n C2' C3' BOG sing 142 n n C2' "H2'1" BOG sing 143 n n C2' "H2'2" BOG sing 144 n n C3' C4' BOG sing 145 n n C3' "H3'1" BOG sing 146 n n C3' "H3'2" BOG sing 147 n n C4' C5' BOG sing 148 n n C4' "H4'1" BOG sing 149 n n C4' "H4'2" BOG sing 150 n n C5' C6' BOG sing 151 n n C5' "H5'1" BOG sing 152 n n C5' "H5'2" BOG sing 153 n n C6' C7' BOG sing 154 n n C6' "H6'1" BOG sing 155 n n C6' "H6'2" BOG sing 156 n n C7' C8' BOG sing 157 n n C7' "H7'1" BOG sing 158 n n C7' "H7'2" BOG sing 159 n n C8' "H8'1" BOG sing 160 n n C8' "H8'2" BOG sing 161 n n C8' "H8'3" BOG sing 162 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 4MMC _atom_sites.fract_transf_matrix[1][1] 0.011407 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00094 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011489 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012332 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 601 751 NA NA . C 2 NA A 1 602 752 NA NA . D 3 29J A 1 603 3 29J DUM . E 3 29J A 1 604 4 29J DUM . F 4 BOG A 1 605 1 BOG BOG . G 4 BOG A 1 606 2 BOG BOG . H 5 HOH A 1 701 2 HOH HOH . H 5 HOH A 2 702 4 HOH HOH . H 5 HOH A 3 703 5 HOH HOH . H 5 HOH A 4 704 6 HOH HOH . H 5 HOH A 5 705 9 HOH HOH . H 5 HOH A 6 706 10 HOH HOH . H 5 HOH A 7 707 11 HOH HOH . H 5 HOH A 8 708 12 HOH HOH . H 5 HOH A 9 709 13 HOH HOH . H 5 HOH A 10 710 14 HOH HOH . H 5 HOH A 11 711 15 HOH HOH . H 5 HOH A 12 712 16 HOH HOH . H 5 HOH A 13 713 17 HOH HOH . H 5 HOH A 14 714 19 HOH HOH . H 5 HOH A 15 715 20 HOH HOH . H 5 HOH A 16 716 21 HOH HOH . H 5 HOH A 17 717 22 HOH HOH . H 5 HOH A 18 718 23 HOH HOH . H 5 HOH A 19 719 24 HOH HOH . H 5 HOH A 20 720 25 HOH HOH . H 5 HOH A 21 721 26 HOH HOH . H 5 HOH A 22 722 27 HOH HOH . H 5 HOH A 23 723 28 HOH HOH . H 5 HOH A 24 724 29 HOH HOH . H 5 HOH A 25 725 30 HOH HOH . H 5 HOH A 26 726 31 HOH HOH . H 5 HOH A 27 727 32 HOH HOH . H 5 HOH A 28 728 33 HOH HOH . H 5 HOH A 29 729 34 HOH HOH . H 5 HOH A 30 730 35 HOH HOH . H 5 HOH A 31 731 36 HOH HOH . H 5 HOH A 32 732 37 HOH HOH . H 5 HOH A 33 733 38 HOH HOH . H 5 HOH A 34 734 39 HOH HOH . H 5 HOH A 35 735 40 HOH HOH . H 5 HOH A 36 736 41 HOH HOH . H 5 HOH A 37 737 42 HOH HOH . H 5 HOH A 38 738 43 HOH HOH . H 5 HOH A 39 739 44 HOH HOH . H 5 HOH A 40 740 45 HOH HOH . H 5 HOH A 41 741 46 HOH HOH . H 5 HOH A 42 742 47 HOH HOH . H 5 HOH A 43 743 48 HOH HOH . H 5 HOH A 44 744 49 HOH HOH . H 5 HOH A 45 745 50 HOH HOH . H 5 HOH A 46 746 51 HOH HOH . H 5 HOH A 47 747 52 HOH HOH . H 5 HOH A 48 748 53 HOH HOH . H 5 HOH A 49 749 54 HOH HOH . H 5 HOH A 50 750 55 HOH HOH . H 5 HOH A 51 751 56 HOH HOH . H 5 HOH A 52 752 57 HOH HOH . H 5 HOH A 53 753 58 HOH HOH . H 5 HOH A 54 754 59 HOH HOH . H 5 HOH A 55 755 60 HOH HOH . H 5 HOH A 56 756 61 HOH HOH . H 5 HOH A 57 757 62 HOH HOH . H 5 HOH A 58 758 63 HOH HOH . H 5 HOH A 59 759 64 HOH HOH . H 5 HOH A 60 760 65 HOH HOH . H 5 HOH A 61 761 67 HOH HOH . H 5 HOH A 62 762 68 HOH HOH . H 5 HOH A 63 763 69 HOH HOH . H 5 HOH A 64 764 70 HOH HOH . H 5 HOH A 65 765 71 HOH HOH . H 5 HOH A 66 766 72 HOH HOH . H 5 HOH A 67 767 73 HOH HOH . H 5 HOH A 68 768 74 HOH HOH . H 5 HOH A 69 769 75 HOH HOH . H 5 HOH A 70 770 76 HOH HOH . H 5 HOH A 71 771 77 HOH HOH . H 5 HOH A 72 772 78 HOH HOH . H 5 HOH A 73 773 79 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . . . F 4 62.374 -34.518 169.919 1 68.78 ? C1 BOG 605 A 1 HETATM 2 O O1 BOG . . . F 4 62.924 -33.336 170.393 1 62.57 ? O1 BOG 605 A 1 HETATM 3 C C2 BOG . . . F 4 61.994 -35.367 171.075 1 71.57 ? C2 BOG 605 A 1 HETATM 4 O O2 BOG . . . F 4 63.028 -35.59 171.953 1 71.35 ? O2 BOG 605 A 1 HETATM 5 C C3 BOG . . . F 4 61.414 -36.635 170.548 1 60.43 ? C3 BOG 605 A 1 HETATM 6 O O3 BOG . . . F 4 61.005 -37.417 171.605 1 68.26 ? O3 BOG 605 A 1 HETATM 7 C C4 BOG . . . F 4 60.257 -36.295 169.688 1 64.16 ? C4 BOG 605 A 1 HETATM 8 O O4 BOG . . . F 4 59.74 -37.448 169.122 1 54.73 ? O4 BOG 605 A 1 HETATM 9 C C5 BOG . . . F 4 60.619 -35.296 168.656 1 61.31 ? C5 BOG 605 A 1 HETATM 10 O O5 BOG . . . F 4 61.235 -34.19 169.21 1 69.11 ? O5 BOG 605 A 1 HETATM 11 C C6 BOG . . . F 4 59.332 -34.883 167.999 1 51.67 ? C6 BOG 605 A 1 HETATM 12 O O6 BOG . . . F 4 59.53 -34.319 166.74 1 71.56 ? O6 BOG 605 A 1 HETATM 13 C C1' BOG . . . F 4 64.298 -33.182 170.58 1 55.42 ? C1' BOG 605 A 1 HETATM 14 C C2' BOG . . . F 4 64.693 -31.775 170.2 1 47.41 ? C2' BOG 605 A 1 HETATM 15 C C3' BOG . . . F 4 66.124 -31.819 169.748 1 48.59 ? C3' BOG 605 A 1 HETATM 16 C C4' BOG . . . F 4 66.568 -30.458 169.338 1 44.12 ? C4' BOG 605 A 1 HETATM 17 C C5' BOG . . . F 4 68.055 -30.514 169.239 1 41.73 ? C5' BOG 605 A 1 HETATM 18 C C6' BOG . . . F 4 68.507 -29.705 168.083 1 38.78 ? C6' BOG 605 A 1 HETATM 19 C C7' BOG . . . F 4 69.663 -28.872 168.504 1 38.01 ? C7' BOG 605 A 1 HETATM 20 C C8' BOG . . . F 4 70.82 -29.175 167.626 1 45.71 ? C8' BOG 605 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #