data_4MMD
#
_model_server_result.job_id            '_fo7hcUhBT5OqLfJ_SWwtA' 
_model_server_result.datetime_utc      '2024-11-26 23:45:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4mmd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":602}' 
#
_entry.id    4MMD 
#
_exptl.entry_id    4MMD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.09 
_cell.angle_gamma         90 
_cell.entry_id            4MMD 
_cell.length_a            84.409 
_cell.length_b            92.207 
_cell.length_c            88.308 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4MMD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,L 1 1 
B,I,J,K,M 2 1 
A,B,C,D,E,F,G,H,I,J,K,L,M 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 I N N 
? 2 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O GLY 20 A GLY 20 1_555 C NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? 
metalc ? metalc2 A O ALA 22 A ALA 22 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? 
metalc ? metalc3 A O VAL 23 A VAL 23 1_555 C NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? 
metalc ? metalc4 A OD1 ASN 27 A ASN 27 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? 
metalc ? metalc5 A O SER 254 A SER 254 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? 
metalc ? metalc6 A OG SER 254 A SER 254 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.701 ? 
metalc ? metalc7 A OD1 ASN 286 A ASN 286 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.604 ? 
metalc ? metalc8 A O ALA 351 A ALA 351 1_555 C NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? 
metalc ? metalc9 A OG1 THR 354 A THR 354 1_555 C NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? 
metalc ? metalc10 A OG SER 355 A SER 355 1_555 C NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? 
metalc ? metalc11 D NA NA . A NA 602 1_555 L O HOH . A HOH 714 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? 
metalc ? metalc12 B O GLY 20 B GLY 20 1_555 I NA NA . B NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? 
metalc ? metalc13 B O ALA 22 B ALA 22 1_555 J NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? 
metalc ? metalc14 B O VAL 23 B VAL 23 1_555 I NA NA . B NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? 
metalc ? metalc15 B OD1 ASN 27 B ASN 27 1_555 J NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? 
metalc ? metalc16 B O SER 254 B SER 254 1_555 J NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? 
metalc ? metalc17 B OG SER 254 B SER 254 1_555 J NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.648 ? 
metalc ? metalc18 B OD1 ASN 286 B ASN 286 1_555 J NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? 
metalc ? metalc19 B O ALA 351 B ALA 351 1_555 I NA NA . B NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? 
metalc ? metalc20 B OG1 THR 354 B THR 354 1_555 I NA NA . B NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? 
metalc ? metalc21 B OG SER 355 B SER 355 1_555 I NA NA . B NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? 
metalc ? metalc22 J NA NA . B NA 602 1_555 M O HOH . B HOH 726 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4MMD 
_atom_sites.fract_transf_matrix[1][1]    0.011847 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000848 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010845 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011353 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NA A 1 601 751 NA NA . 
D 2 NA A 1 602 752 NA NA . 
E 3 29E A 1 603 2 29E DUM . 
F 4 BOG A 1 604 1 BOG BOG . 
G 4 BOG A 1 605 2 BOG BOG . 
H 4 BOG A 1 606 3 BOG BOG . 
I 2 NA B 1 601 751 NA NA . 
J 2 NA B 1 602 752 NA NA . 
K 3 29E B 1 603 1 29E DUM . 
L 5 HOH A 1 701 1 HOH HOH . 
L 5 HOH A 2 702 4 HOH HOH . 
L 5 HOH A 3 703 6 HOH HOH . 
L 5 HOH A 4 704 10 HOH HOH . 
L 5 HOH A 5 705 11 HOH HOH . 
L 5 HOH A 6 706 12 HOH HOH . 
L 5 HOH A 7 707 13 HOH HOH . 
L 5 HOH A 8 708 16 HOH HOH . 
L 5 HOH A 9 709 23 HOH HOH . 
L 5 HOH A 10 710 28 HOH HOH . 
L 5 HOH A 11 711 31 HOH HOH . 
L 5 HOH A 12 712 32 HOH HOH . 
L 5 HOH A 13 713 34 HOH HOH . 
L 5 HOH A 14 714 41 HOH HOH . 
L 5 HOH A 15 715 42 HOH HOH . 
L 5 HOH A 16 716 44 HOH HOH . 
L 5 HOH A 17 717 46 HOH HOH . 
L 5 HOH A 18 718 50 HOH HOH . 
L 5 HOH A 19 719 51 HOH HOH . 
L 5 HOH A 20 720 52 HOH HOH . 
L 5 HOH A 21 721 54 HOH HOH . 
L 5 HOH A 22 722 57 HOH HOH . 
L 5 HOH A 23 723 58 HOH HOH . 
L 5 HOH A 24 724 61 HOH HOH . 
L 5 HOH A 25 725 64 HOH HOH . 
L 5 HOH A 26 726 67 HOH HOH . 
L 5 HOH A 27 727 68 HOH HOH . 
L 5 HOH A 28 728 72 HOH HOH . 
L 5 HOH A 29 729 74 HOH HOH . 
L 5 HOH A 30 730 75 HOH HOH . 
L 5 HOH A 31 731 76 HOH HOH . 
L 5 HOH A 32 732 78 HOH HOH . 
L 5 HOH A 33 733 80 HOH HOH . 
L 5 HOH A 34 734 81 HOH HOH . 
L 5 HOH A 35 735 83 HOH HOH . 
L 5 HOH A 36 736 87 HOH HOH . 
L 5 HOH A 37 737 93 HOH HOH . 
L 5 HOH A 38 738 94 HOH HOH . 
L 5 HOH A 39 739 95 HOH HOH . 
L 5 HOH A 40 740 96 HOH HOH . 
L 5 HOH A 41 741 100 HOH HOH . 
L 5 HOH A 42 742 101 HOH HOH . 
L 5 HOH A 43 743 106 HOH HOH . 
L 5 HOH A 44 744 113 HOH HOH . 
L 5 HOH A 45 745 116 HOH HOH . 
L 5 HOH A 46 746 119 HOH HOH . 
L 5 HOH A 47 747 121 HOH HOH . 
L 5 HOH A 48 748 122 HOH HOH . 
L 5 HOH A 49 749 123 HOH HOH . 
L 5 HOH A 50 750 125 HOH HOH . 
L 5 HOH A 51 751 129 HOH HOH . 
L 5 HOH A 52 752 134 HOH HOH . 
L 5 HOH A 53 753 136 HOH HOH . 
L 5 HOH A 54 754 137 HOH HOH . 
L 5 HOH A 55 755 138 HOH HOH . 
L 5 HOH A 56 756 139 HOH HOH . 
L 5 HOH A 57 757 140 HOH HOH . 
L 5 HOH A 58 758 141 HOH HOH . 
L 5 HOH A 59 759 142 HOH HOH . 
L 5 HOH A 60 760 146 HOH HOH . 
L 5 HOH A 61 761 153 HOH HOH . 
M 5 HOH B 1 701 2 HOH HOH . 
M 5 HOH B 2 702 3 HOH HOH . 
M 5 HOH B 3 703 5 HOH HOH . 
M 5 HOH B 4 704 7 HOH HOH . 
M 5 HOH B 5 705 8 HOH HOH . 
M 5 HOH B 6 706 14 HOH HOH . 
M 5 HOH B 7 707 15 HOH HOH . 
M 5 HOH B 8 708 17 HOH HOH . 
M 5 HOH B 9 709 18 HOH HOH . 
M 5 HOH B 10 710 19 HOH HOH . 
M 5 HOH B 11 711 20 HOH HOH . 
M 5 HOH B 12 712 21 HOH HOH . 
M 5 HOH B 13 713 22 HOH HOH . 
M 5 HOH B 14 714 25 HOH HOH . 
M 5 HOH B 15 715 29 HOH HOH . 
M 5 HOH B 16 716 30 HOH HOH . 
M 5 HOH B 17 717 33 HOH HOH . 
M 5 HOH B 18 718 35 HOH HOH . 
M 5 HOH B 19 719 36 HOH HOH . 
M 5 HOH B 20 720 37 HOH HOH . 
M 5 HOH B 21 721 38 HOH HOH . 
M 5 HOH B 22 722 39 HOH HOH . 
M 5 HOH B 23 723 40 HOH HOH . 
M 5 HOH B 24 724 45 HOH HOH . 
M 5 HOH B 25 725 47 HOH HOH . 
M 5 HOH B 26 726 48 HOH HOH . 
M 5 HOH B 27 727 49 HOH HOH . 
M 5 HOH B 28 728 55 HOH HOH . 
M 5 HOH B 29 729 56 HOH HOH . 
M 5 HOH B 30 730 59 HOH HOH . 
M 5 HOH B 31 731 62 HOH HOH . 
M 5 HOH B 32 732 63 HOH HOH . 
M 5 HOH B 33 733 65 HOH HOH . 
M 5 HOH B 34 734 66 HOH HOH . 
M 5 HOH B 35 735 70 HOH HOH . 
M 5 HOH B 36 736 71 HOH HOH . 
M 5 HOH B 37 737 73 HOH HOH . 
M 5 HOH B 38 738 77 HOH HOH . 
M 5 HOH B 39 739 79 HOH HOH . 
M 5 HOH B 40 740 82 HOH HOH . 
M 5 HOH B 41 741 85 HOH HOH . 
M 5 HOH B 42 742 86 HOH HOH . 
M 5 HOH B 43 743 88 HOH HOH . 
M 5 HOH B 44 744 89 HOH HOH . 
M 5 HOH B 45 745 90 HOH HOH . 
M 5 HOH B 46 746 92 HOH HOH . 
M 5 HOH B 47 747 97 HOH HOH . 
M 5 HOH B 48 748 98 HOH HOH . 
M 5 HOH B 49 749 99 HOH HOH . 
M 5 HOH B 50 750 117 HOH HOH . 
M 5 HOH B 51 751 126 HOH HOH . 
M 5 HOH B 52 752 127 HOH HOH . 
M 5 HOH B 53 753 128 HOH HOH . 
M 5 HOH B 54 754 133 HOH HOH . 
M 5 HOH B 55 755 135 HOH HOH . 
M 5 HOH B 56 756 144 HOH HOH . 
M 5 HOH B 57 757 149 HOH HOH . 
M 5 HOH B 58 758 151 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         J 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               57.102 
_atom_site.Cartn_y               17.748 
_atom_site.Cartn_z               2.927 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        49.23 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           602 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           283 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           1 
#