data_4MME # _model_server_result.job_id GdTFY6nLGidkOTxCygXnmg _model_server_result.datetime_utc '2024-10-13 19:20:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4mme # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":603}' # _entry.id 4MME # _exptl.entry_id 4MME _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.74 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (5R)-5-(4-chlorophenyl)-2,5-dihydro-3H-imidazo[2,1-a]isoindol-5-ol _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.75 _cell.angle_gamma 90 _cell.entry_id 4MME _cell.length_a 84.258 _cell.length_b 92.825 _cell.length_c 87.53 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4MME _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,N 1 1 B,I,J,K,L,M,O 2 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 20 A GLY 20 1_555 C NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc2 A O ALA 22 A ALA 22 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? metalc ? metalc3 A O VAL 23 A VAL 23 1_555 C NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc4 A OD1 ASN 27 A ASN 27 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc5 A O SER 254 A SER 254 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc6 A OG SER 254 A SER 254 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc7 A OD1 ASN 286 A ASN 286 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? metalc ? metalc8 A O ALA 351 A ALA 351 1_555 C NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc9 A OG1 THR 354 A THR 354 1_555 C NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc10 A OG SER 355 A SER 355 1_555 C NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc11 D NA NA . A NA 602 1_555 N O HOH . A HOH 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc12 B O GLY 20 B GLY 20 1_555 I NA NA . B NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc13 B O ALA 22 B ALA 22 1_555 J NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc14 B O VAL 23 B VAL 23 1_555 I NA NA . B NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc15 B OD1 ASN 27 B ASN 27 1_555 J NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc16 B O SER 254 B SER 254 1_555 J NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc17 B OG SER 254 B SER 254 1_555 J NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? metalc ? metalc18 B OD1 ASN 286 B ASN 286 1_555 J NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc19 B O ALA 351 B ALA 351 1_555 I NA NA . B NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc20 B OG1 THR 354 B THR 354 1_555 I NA NA . B NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc21 B OG SER 355 B SER 355 1_555 I NA NA . B NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc22 J NA NA . B NA 602 1_555 O O HOH . B HOH 768 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? # _chem_comp.formula 'C16 H13 Cl N2 O' _chem_comp.formula_weight 284.74 _chem_comp.id 29Q _chem_comp.mon_nstd_flag . _chem_comp.name (5R)-5-(4-chlorophenyl)-2,5-dihydro-3H-imidazo[2,1-a]isoindol-5-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL C13 29Q sing 1 n n C14 C13 29Q doub 2 n y C14 C15 29Q sing 3 n y C13 C12 29Q sing 4 n y C15 C10 29Q doub 5 n y C12 C11 29Q doub 6 n y C10 C11 29Q sing 7 n y C10 C 29Q sing 8 n n O C 29Q sing 9 n n C C5 29Q sing 10 n n C N 29Q sing 11 n n C6 C5 29Q doub 12 n y C6 C7 29Q sing 13 n y C5 C4 29Q sing 14 n y C7 C8 29Q doub 15 n y N C3 29Q sing 16 n n N C1 29Q sing 17 n n C3 C2 29Q sing 18 n n C4 C1 29Q sing 19 n n C4 C9 29Q doub 20 n y C1 N1 29Q doub 21 n n C8 C9 29Q sing 22 n y C2 N1 29Q sing 23 n n C12 H1 29Q sing 24 n n C11 H2 29Q sing 25 n n C14 H3 29Q sing 26 n n C15 H4 29Q sing 27 n n O H5 29Q sing 28 n n C6 H6 29Q sing 29 n n C7 H7 29Q sing 30 n n C8 H8 29Q sing 31 n n C9 H9 29Q sing 32 n n C3 H10 29Q sing 33 n n C2 H11 29Q sing 34 n n C3 H12 29Q sing 35 n n C2 H13 29Q sing 36 n n # _atom_sites.entry_id 4MME _atom_sites.fract_transf_matrix[1][1] 0.011868 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000777 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010773 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011449 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA A 1 601 751 NA NA . D 2 NA A 1 602 752 NA NA . E 3 29Q A 1 603 6 29Q DUM . F 4 BOG A 1 604 1 BOG BOG . G 4 BOG A 1 605 2 BOG BOG . H 4 BOG A 1 606 5 BOG BOG . I 2 NA B 1 601 751 NA NA . J 2 NA B 1 602 752 NA NA . K 3 29Q B 1 603 7 29Q DUM . L 4 BOG B 1 604 3 BOG BOG . M 4 BOG B 1 605 4 BOG BOG . N 5 HOH A 1 701 1 HOH HOH . N 5 HOH A 2 702 2 HOH HOH . N 5 HOH A 3 703 6 HOH HOH . N 5 HOH A 4 704 7 HOH HOH . N 5 HOH A 5 705 8 HOH HOH . N 5 HOH A 6 706 9 HOH HOH . N 5 HOH A 7 707 13 HOH HOH . N 5 HOH A 8 708 16 HOH HOH . N 5 HOH A 9 709 17 HOH HOH . N 5 HOH A 10 710 18 HOH HOH . N 5 HOH A 11 711 20 HOH HOH . N 5 HOH A 12 712 22 HOH HOH . N 5 HOH A 13 713 25 HOH HOH . N 5 HOH A 14 714 27 HOH HOH . N 5 HOH A 15 715 29 HOH HOH . N 5 HOH A 16 716 30 HOH HOH . N 5 HOH A 17 717 31 HOH HOH . N 5 HOH A 18 718 34 HOH HOH . N 5 HOH A 19 719 35 HOH HOH . N 5 HOH A 20 720 40 HOH HOH . N 5 HOH A 21 721 41 HOH HOH . N 5 HOH A 22 722 42 HOH HOH . N 5 HOH A 23 723 43 HOH HOH . N 5 HOH A 24 724 44 HOH HOH . N 5 HOH A 25 725 47 HOH HOH . N 5 HOH A 26 726 48 HOH HOH . N 5 HOH A 27 727 50 HOH HOH . N 5 HOH A 28 728 51 HOH HOH . N 5 HOH A 29 729 52 HOH HOH . N 5 HOH A 30 730 53 HOH HOH . N 5 HOH A 31 731 58 HOH HOH . N 5 HOH A 32 732 59 HOH HOH . N 5 HOH A 33 733 61 HOH HOH . N 5 HOH A 34 734 64 HOH HOH . N 5 HOH A 35 735 66 HOH HOH . N 5 HOH A 36 736 67 HOH HOH . N 5 HOH A 37 737 69 HOH HOH . N 5 HOH A 38 738 71 HOH HOH . N 5 HOH A 39 739 72 HOH HOH . N 5 HOH A 40 740 75 HOH HOH . N 5 HOH A 41 741 76 HOH HOH . N 5 HOH A 42 742 77 HOH HOH . N 5 HOH A 43 743 78 HOH HOH . N 5 HOH A 44 744 80 HOH HOH . N 5 HOH A 45 745 82 HOH HOH . N 5 HOH A 46 746 85 HOH HOH . N 5 HOH A 47 747 89 HOH HOH . N 5 HOH A 48 748 90 HOH HOH . N 5 HOH A 49 749 92 HOH HOH . N 5 HOH A 50 750 99 HOH HOH . N 5 HOH A 51 751 101 HOH HOH . N 5 HOH A 52 752 102 HOH HOH . N 5 HOH A 53 753 103 HOH HOH . N 5 HOH A 54 754 104 HOH HOH . N 5 HOH A 55 755 105 HOH HOH . N 5 HOH A 56 756 106 HOH HOH . N 5 HOH A 57 757 108 HOH HOH . N 5 HOH A 58 758 109 HOH HOH . N 5 HOH A 59 759 110 HOH HOH . N 5 HOH A 60 760 114 HOH HOH . N 5 HOH A 61 761 115 HOH HOH . N 5 HOH A 62 762 116 HOH HOH . N 5 HOH A 63 763 117 HOH HOH . N 5 HOH A 64 764 118 HOH HOH . N 5 HOH A 65 765 120 HOH HOH . N 5 HOH A 66 766 121 HOH HOH . N 5 HOH A 67 767 123 HOH HOH . N 5 HOH A 68 768 125 HOH HOH . N 5 HOH A 69 769 127 HOH HOH . N 5 HOH A 70 770 134 HOH HOH . N 5 HOH A 71 771 135 HOH HOH . N 5 HOH A 72 772 136 HOH HOH . N 5 HOH A 73 773 137 HOH HOH . N 5 HOH A 74 774 138 HOH HOH . N 5 HOH A 75 775 141 HOH HOH . N 5 HOH A 76 776 145 HOH HOH . N 5 HOH A 77 777 146 HOH HOH . N 5 HOH A 78 778 147 HOH HOH . N 5 HOH A 79 779 148 HOH HOH . N 5 HOH A 80 780 150 HOH HOH . N 5 HOH A 81 781 152 HOH HOH . N 5 HOH A 82 782 153 HOH HOH . N 5 HOH A 83 783 158 HOH HOH . N 5 HOH A 84 784 159 HOH HOH . O 5 HOH B 1 701 4 HOH HOH . O 5 HOH B 2 702 5 HOH HOH . O 5 HOH B 3 703 11 HOH HOH . O 5 HOH B 4 704 12 HOH HOH . O 5 HOH B 5 705 15 HOH HOH . O 5 HOH B 6 706 19 HOH HOH . O 5 HOH B 7 707 21 HOH HOH . O 5 HOH B 8 708 23 HOH HOH . O 5 HOH B 9 709 24 HOH HOH . O 5 HOH B 10 710 26 HOH HOH . O 5 HOH B 11 711 28 HOH HOH . O 5 HOH B 12 712 32 HOH HOH . O 5 HOH B 13 713 33 HOH HOH . O 5 HOH B 14 714 36 HOH HOH . O 5 HOH B 15 715 37 HOH HOH . O 5 HOH B 16 716 38 HOH HOH . O 5 HOH B 17 717 39 HOH HOH . O 5 HOH B 18 718 45 HOH HOH . O 5 HOH B 19 719 46 HOH HOH . O 5 HOH B 20 720 49 HOH HOH . O 5 HOH B 21 721 54 HOH HOH . O 5 HOH B 22 722 55 HOH HOH . O 5 HOH B 23 723 56 HOH HOH . O 5 HOH B 24 724 57 HOH HOH . O 5 HOH B 25 725 60 HOH HOH . O 5 HOH B 26 726 62 HOH HOH . O 5 HOH B 27 727 63 HOH HOH . O 5 HOH B 28 728 65 HOH HOH . O 5 HOH B 29 729 68 HOH HOH . O 5 HOH B 30 730 70 HOH HOH . O 5 HOH B 31 731 73 HOH HOH . O 5 HOH B 32 732 74 HOH HOH . O 5 HOH B 33 733 79 HOH HOH . O 5 HOH B 34 734 81 HOH HOH . O 5 HOH B 35 735 84 HOH HOH . O 5 HOH B 36 736 86 HOH HOH . O 5 HOH B 37 737 87 HOH HOH . O 5 HOH B 38 738 88 HOH HOH . O 5 HOH B 39 739 91 HOH HOH . O 5 HOH B 40 740 93 HOH HOH . O 5 HOH B 41 741 94 HOH HOH . O 5 HOH B 42 742 95 HOH HOH . O 5 HOH B 43 743 96 HOH HOH . O 5 HOH B 44 744 97 HOH HOH . O 5 HOH B 45 745 98 HOH HOH . O 5 HOH B 46 746 100 HOH HOH . O 5 HOH B 47 747 107 HOH HOH . O 5 HOH B 48 748 111 HOH HOH . O 5 HOH B 49 749 112 HOH HOH . O 5 HOH B 50 750 113 HOH HOH . O 5 HOH B 51 751 119 HOH HOH . O 5 HOH B 52 752 122 HOH HOH . O 5 HOH B 53 753 124 HOH HOH . O 5 HOH B 54 754 126 HOH HOH . O 5 HOH B 55 755 128 HOH HOH . O 5 HOH B 56 756 129 HOH HOH . O 5 HOH B 57 757 131 HOH HOH . O 5 HOH B 58 758 132 HOH HOH . O 5 HOH B 59 759 133 HOH HOH . O 5 HOH B 60 760 139 HOH HOH . O 5 HOH B 61 761 140 HOH HOH . O 5 HOH B 62 762 143 HOH HOH . O 5 HOH B 63 763 144 HOH HOH . O 5 HOH B 64 764 149 HOH HOH . O 5 HOH B 65 765 151 HOH HOH . O 5 HOH B 66 766 154 HOH HOH . O 5 HOH B 67 767 156 HOH HOH . O 5 HOH B 68 768 157 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CL CL 29Q . . . E 3 100.379 19.642 30.816 1 49.31 ? CL 29Q 603 A 1 HETATM 2 C C13 29Q . . . E 3 101.271 20.426 32.185 1 37.26 ? C13 29Q 603 A 1 HETATM 3 C C12 29Q . . . E 3 100.819 20.351 33.513 1 46.83 ? C12 29Q 603 A 1 HETATM 4 C C11 29Q . . . E 3 101.527 20.988 34.556 1 43.22 ? C11 29Q 603 A 1 HETATM 5 C C14 29Q . . . E 3 102.403 21.129 31.896 1 29.56 ? C14 29Q 603 A 1 HETATM 6 C C15 29Q . . . E 3 103.101 21.759 32.933 1 37.62 ? C15 29Q 603 A 1 HETATM 7 C C10 29Q . . . E 3 102.695 21.683 34.258 1 36.74 ? C10 29Q 603 A 1 HETATM 8 C C 29Q . . . E 3 103.51 22.459 35.262 1 46.14 ? C 29Q 603 A 1 HETATM 9 O O 29Q . . . E 3 104.573 23.117 34.547 1 43.22 ? O 29Q 603 A 1 HETATM 10 C C5 29Q . . . E 3 102.635 23.489 35.967 1 46.14 ? C5 29Q 603 A 1 HETATM 11 C C6 29Q . . . E 3 101.745 24.401 35.4 1 45.6 ? C6 29Q 603 A 1 HETATM 12 C C7 29Q . . . E 3 101.029 25.316 36.199 1 46.8 ? C7 29Q 603 A 1 HETATM 13 C C8 29Q . . . E 3 101.209 25.322 37.583 1 57.36 ? C8 29Q 603 A 1 HETATM 14 C C9 29Q . . . E 3 102.123 24.415 38.184 1 50.09 ? C9 29Q 603 A 1 HETATM 15 C C4 29Q . . . E 3 102.801 23.526 37.355 1 45.27 ? C4 29Q 603 A 1 HETATM 16 C C1 29Q . . . E 3 103.8 22.438 37.539 1 49.28 ? C1 29Q 603 A 1 HETATM 17 N N 29Q . . . E 3 104.154 21.827 36.434 1 47.79 ? N 29Q 603 A 1 HETATM 18 C C3 29Q . . . E 3 105.135 20.793 36.488 1 35.74 ? C3 29Q 603 A 1 HETATM 19 C C2 29Q . . . E 3 105.303 20.765 38.034 1 35.82 ? C2 29Q 603 A 1 HETATM 20 N N1 29Q . . . E 3 104.469 21.859 38.579 1 40.35 ? N1 29Q 603 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #