data_4MMF # _model_server_result.job_id Ijr6tiDmS4nId1U5maZv-w _model_server_result.datetime_utc '2024-11-26 18:09:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4mmf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 4MMF # _exptl.entry_id 4MMF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.54 _cell.angle_gamma 90 _cell.entry_id 4MMF _cell.length_a 84.227 _cell.length_b 92.137 _cell.length_c 87.827 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4MMF _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,N 1 1 B,H,I,J,K,L,M,O 2 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 H N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 20 A GLY 20 1_555 C NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc2 A O ALA 22 A ALA 22 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc3 A O VAL 23 A VAL 23 1_555 C NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc4 A OD1 ASN 27 A ASN 27 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc5 A O SER 254 A SER 254 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc6 A OG SER 254 A SER 254 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? metalc ? metalc7 A OD1 ASN 286 A ASN 286 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? metalc ? metalc8 A O ALA 351 A ALA 351 1_555 C NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc9 A OG1 THR 354 A THR 354 1_555 C NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc10 A OG SER 355 A SER 355 1_555 C NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc11 D NA NA . A NA 602 1_555 N O HOH . A HOH 727 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? metalc ? metalc12 B O GLY 20 B GLY 20 1_555 H NA NA . B NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc13 B O ALA 22 B ALA 22 1_555 I NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc14 B O VAL 23 B VAL 23 1_555 H NA NA . B NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc15 B OD1 ASN 27 B ASN 27 1_555 I NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc16 B O SER 254 B SER 254 1_555 I NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc17 B OG SER 254 B SER 254 1_555 I NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? metalc ? metalc18 B OD1 ASN 286 B ASN 286 1_555 I NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc19 B O ALA 351 B ALA 351 1_555 H NA NA . B NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc20 B OG1 THR 354 B THR 354 1_555 H NA NA . B NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? metalc ? metalc21 B OG SER 355 B SER 355 1_555 H NA NA . B NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc22 I NA NA . B NA 602 1_555 O O HOH . B HOH 723 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4MMF _atom_sites.fract_transf_matrix[1][1] 0.011873 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000734 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010853 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011408 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA A 1 601 751 NA NA . D 2 NA A 1 602 752 NA NA . E 3 29Q A 1 603 4 29Q DUM . F 4 BOG A 1 604 2 BOG BOG . G 4 BOG A 1 605 4 BOG BOG . H 2 NA B 1 601 751 NA NA . I 2 NA B 1 602 752 NA NA . J 3 29Q B 1 603 4 29Q DUM . K 4 BOG B 1 604 1 BOG BOG . L 4 BOG B 1 605 605 BOG BOG . M 4 BOG B 1 606 5 BOG BOG . N 5 HOH A 1 701 1 HOH HOH . N 5 HOH A 2 702 2 HOH HOH . N 5 HOH A 3 703 3 HOH HOH . N 5 HOH A 4 704 5 HOH HOH . N 5 HOH A 5 705 8 HOH HOH . N 5 HOH A 6 706 12 HOH HOH . N 5 HOH A 7 707 13 HOH HOH . N 5 HOH A 8 708 14 HOH HOH . N 5 HOH A 9 709 16 HOH HOH . N 5 HOH A 10 710 20 HOH HOH . N 5 HOH A 11 711 23 HOH HOH . N 5 HOH A 12 712 24 HOH HOH . N 5 HOH A 13 713 25 HOH HOH . N 5 HOH A 14 714 28 HOH HOH . N 5 HOH A 15 715 29 HOH HOH . N 5 HOH A 16 716 32 HOH HOH . N 5 HOH A 17 717 34 HOH HOH . N 5 HOH A 18 718 35 HOH HOH . N 5 HOH A 19 719 38 HOH HOH . N 5 HOH A 20 720 39 HOH HOH . N 5 HOH A 21 721 41 HOH HOH . N 5 HOH A 22 722 44 HOH HOH . N 5 HOH A 23 723 47 HOH HOH . N 5 HOH A 24 724 48 HOH HOH . N 5 HOH A 25 725 49 HOH HOH . N 5 HOH A 26 726 50 HOH HOH . N 5 HOH A 27 727 52 HOH HOH . N 5 HOH A 28 728 53 HOH HOH . O 5 HOH B 1 701 4 HOH HOH . O 5 HOH B 2 702 6 HOH HOH . O 5 HOH B 3 703 9 HOH HOH . O 5 HOH B 4 704 10 HOH HOH . O 5 HOH B 5 705 11 HOH HOH . O 5 HOH B 6 706 15 HOH HOH . O 5 HOH B 7 707 17 HOH HOH . O 5 HOH B 8 708 18 HOH HOH . O 5 HOH B 9 709 19 HOH HOH . O 5 HOH B 10 710 21 HOH HOH . O 5 HOH B 11 711 22 HOH HOH . O 5 HOH B 12 712 26 HOH HOH . O 5 HOH B 13 713 30 HOH HOH . O 5 HOH B 14 714 31 HOH HOH . O 5 HOH B 15 715 33 HOH HOH . O 5 HOH B 16 716 36 HOH HOH . O 5 HOH B 17 717 37 HOH HOH . O 5 HOH B 18 718 40 HOH HOH . O 5 HOH B 19 719 42 HOH HOH . O 5 HOH B 20 720 43 HOH HOH . O 5 HOH B 21 721 45 HOH HOH . O 5 HOH B 22 722 46 HOH HOH . O 5 HOH B 23 723 51 HOH HOH . O 5 HOH B 24 724 54 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x -70.46 _atom_site.Cartn_y 15.381 _atom_site.Cartn_z 9.739 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 28.21 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 601 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #