data_4MMF
#
_model_server_result.job_id            dxEgoar9_SCTACBXWFHwTA 
_model_server_result.datetime_utc      '2024-10-13 19:23:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4mmf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":603}' 
#
_entry.id    4MMF 
#
_exptl.entry_id    4MMF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              284.74 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (5R)-5-(4-chlorophenyl)-2,5-dihydro-3H-imidazo[2,1-a]isoindol-5-ol 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          93.54 
_cell.angle_gamma         90 
_cell.entry_id            4MMF 
_cell.length_a            84.227 
_cell.length_b            92.137 
_cell.length_c            87.827 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4MMF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,N 1 1 
B,H,I,J,K,L,M,O 2 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O GLY 20 A GLY 20 1_555 C NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? 
metalc ? metalc2 A O ALA 22 A ALA 22 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? 
metalc ? metalc3 A O VAL 23 A VAL 23 1_555 C NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? 
metalc ? metalc4 A OD1 ASN 27 A ASN 27 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? 
metalc ? metalc5 A O SER 254 A SER 254 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? 
metalc ? metalc6 A OG SER 254 A SER 254 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? 
metalc ? metalc7 A OD1 ASN 286 A ASN 286 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? 
metalc ? metalc8 A O ALA 351 A ALA 351 1_555 C NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? 
metalc ? metalc9 A OG1 THR 354 A THR 354 1_555 C NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? 
metalc ? metalc10 A OG SER 355 A SER 355 1_555 C NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? 
metalc ? metalc11 D NA NA . A NA 602 1_555 N O HOH . A HOH 727 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? 
metalc ? metalc12 B O GLY 20 B GLY 20 1_555 H NA NA . B NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? 
metalc ? metalc13 B O ALA 22 B ALA 22 1_555 I NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? 
metalc ? metalc14 B O VAL 23 B VAL 23 1_555 H NA NA . B NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? 
metalc ? metalc15 B OD1 ASN 27 B ASN 27 1_555 I NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? 
metalc ? metalc16 B O SER 254 B SER 254 1_555 I NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? 
metalc ? metalc17 B OG SER 254 B SER 254 1_555 I NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? 
metalc ? metalc18 B OD1 ASN 286 B ASN 286 1_555 I NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? 
metalc ? metalc19 B O ALA 351 B ALA 351 1_555 H NA NA . B NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? 
metalc ? metalc20 B OG1 THR 354 B THR 354 1_555 H NA NA . B NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? 
metalc ? metalc21 B OG SER 355 B SER 355 1_555 H NA NA . B NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? 
metalc ? metalc22 I NA NA . B NA 602 1_555 O O HOH . B HOH 723 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? 
#
_chem_comp.formula           'C16 H13 Cl N2 O' 
_chem_comp.formula_weight    284.74 
_chem_comp.id                29Q 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (5R)-5-(4-chlorophenyl)-2,5-dihydro-3H-imidazo[2,1-a]isoindol-5-ol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CL C13 29Q sing 1 n n 
C14 C13 29Q doub 2 n y 
C14 C15 29Q sing 3 n y 
C13 C12 29Q sing 4 n y 
C15 C10 29Q doub 5 n y 
C12 C11 29Q doub 6 n y 
C10 C11 29Q sing 7 n y 
C10 C 29Q sing 8 n n 
O C 29Q sing 9 n n 
C C5 29Q sing 10 n n 
C N 29Q sing 11 n n 
C6 C5 29Q doub 12 n y 
C6 C7 29Q sing 13 n y 
C5 C4 29Q sing 14 n y 
C7 C8 29Q doub 15 n y 
N C3 29Q sing 16 n n 
N C1 29Q sing 17 n n 
C3 C2 29Q sing 18 n n 
C4 C1 29Q sing 19 n n 
C4 C9 29Q doub 20 n y 
C1 N1 29Q doub 21 n n 
C8 C9 29Q sing 22 n y 
C2 N1 29Q sing 23 n n 
C12 H1 29Q sing 24 n n 
C11 H2 29Q sing 25 n n 
C14 H3 29Q sing 26 n n 
C15 H4 29Q sing 27 n n 
O H5 29Q sing 28 n n 
C6 H6 29Q sing 29 n n 
C7 H7 29Q sing 30 n n 
C8 H8 29Q sing 31 n n 
C9 H9 29Q sing 32 n n 
C3 H10 29Q sing 33 n n 
C2 H11 29Q sing 34 n n 
C3 H12 29Q sing 35 n n 
C2 H13 29Q sing 36 n n 
#
_atom_sites.entry_id                     4MMF 
_atom_sites.fract_transf_matrix[1][1]    0.011873 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000734 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010853 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011408 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NA A 1 601 751 NA NA . 
D 2 NA A 1 602 752 NA NA . 
E 3 29Q A 1 603 4 29Q DUM . 
F 4 BOG A 1 604 2 BOG BOG . 
G 4 BOG A 1 605 4 BOG BOG . 
H 2 NA B 1 601 751 NA NA . 
I 2 NA B 1 602 752 NA NA . 
J 3 29Q B 1 603 4 29Q DUM . 
K 4 BOG B 1 604 1 BOG BOG . 
L 4 BOG B 1 605 605 BOG BOG . 
M 4 BOG B 1 606 5 BOG BOG . 
N 5 HOH A 1 701 1 HOH HOH . 
N 5 HOH A 2 702 2 HOH HOH . 
N 5 HOH A 3 703 3 HOH HOH . 
N 5 HOH A 4 704 5 HOH HOH . 
N 5 HOH A 5 705 8 HOH HOH . 
N 5 HOH A 6 706 12 HOH HOH . 
N 5 HOH A 7 707 13 HOH HOH . 
N 5 HOH A 8 708 14 HOH HOH . 
N 5 HOH A 9 709 16 HOH HOH . 
N 5 HOH A 10 710 20 HOH HOH . 
N 5 HOH A 11 711 23 HOH HOH . 
N 5 HOH A 12 712 24 HOH HOH . 
N 5 HOH A 13 713 25 HOH HOH . 
N 5 HOH A 14 714 28 HOH HOH . 
N 5 HOH A 15 715 29 HOH HOH . 
N 5 HOH A 16 716 32 HOH HOH . 
N 5 HOH A 17 717 34 HOH HOH . 
N 5 HOH A 18 718 35 HOH HOH . 
N 5 HOH A 19 719 38 HOH HOH . 
N 5 HOH A 20 720 39 HOH HOH . 
N 5 HOH A 21 721 41 HOH HOH . 
N 5 HOH A 22 722 44 HOH HOH . 
N 5 HOH A 23 723 47 HOH HOH . 
N 5 HOH A 24 724 48 HOH HOH . 
N 5 HOH A 25 725 49 HOH HOH . 
N 5 HOH A 26 726 50 HOH HOH . 
N 5 HOH A 27 727 52 HOH HOH . 
N 5 HOH A 28 728 53 HOH HOH . 
O 5 HOH B 1 701 4 HOH HOH . 
O 5 HOH B 2 702 6 HOH HOH . 
O 5 HOH B 3 703 9 HOH HOH . 
O 5 HOH B 4 704 10 HOH HOH . 
O 5 HOH B 5 705 11 HOH HOH . 
O 5 HOH B 6 706 15 HOH HOH . 
O 5 HOH B 7 707 17 HOH HOH . 
O 5 HOH B 8 708 18 HOH HOH . 
O 5 HOH B 9 709 19 HOH HOH . 
O 5 HOH B 10 710 21 HOH HOH . 
O 5 HOH B 11 711 22 HOH HOH . 
O 5 HOH B 12 712 26 HOH HOH . 
O 5 HOH B 13 713 30 HOH HOH . 
O 5 HOH B 14 714 31 HOH HOH . 
O 5 HOH B 15 715 33 HOH HOH . 
O 5 HOH B 16 716 36 HOH HOH . 
O 5 HOH B 17 717 37 HOH HOH . 
O 5 HOH B 18 718 40 HOH HOH . 
O 5 HOH B 19 719 42 HOH HOH . 
O 5 HOH B 20 720 43 HOH HOH . 
O 5 HOH B 21 721 45 HOH HOH . 
O 5 HOH B 22 722 46 HOH HOH . 
O 5 HOH B 23 723 51 HOH HOH . 
O 5 HOH B 24 724 54 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 CL CL 29Q . . . J 3 -29.259 13.609 31.531 1 60.13 ? CL 29Q 603 B 1 
HETATM 2 C C13 29Q . . . J 3 -28.196 14.415 32.724 1 40.87 ? C13 29Q 603 B 1 
HETATM 3 C C12 29Q . . . J 3 -28.312 14.1 34.076 1 33.07 ? C12 29Q 603 B 1 
HETATM 4 C C11 29Q . . . J 3 -27.496 14.736 35.004 1 36.77 ? C11 29Q 603 B 1 
HETATM 5 C C14 29Q . . . J 3 -27.276 15.358 32.282 1 36.82 ? C14 29Q 603 B 1 
HETATM 6 C C15 29Q . . . J 3 -26.466 15.995 33.21 1 36.52 ? C15 29Q 603 B 1 
HETATM 7 C C10 29Q . . . J 3 -26.567 15.671 34.561 1 36.97 ? C10 29Q 603 B 1 
HETATM 8 C C 29Q . . . J 3 -25.696 16.42 35.511 1 38.61 ? C 29Q 603 B 1 
HETATM 9 O O 29Q . . . J 3 -24.635 17.048 34.793 1 46.83 ? O 29Q 603 B 1 
HETATM 10 C C5 29Q . . . J 3 -26.582 17.436 36.195 1 38.82 ? C5 29Q 603 B 1 
HETATM 11 C C6 29Q . . . J 3 -27.41 18.387 35.613 1 35.59 ? C6 29Q 603 B 1 
HETATM 12 C C7 29Q . . . J 3 -28.134 19.244 36.44 1 36.18 ? C7 29Q 603 B 1 
HETATM 13 C C8 29Q . . . J 3 -28.05 19.168 37.831 1 33.89 ? C8 29Q 603 B 1 
HETATM 14 C C9 29Q . . . J 3 -27.229 18.222 38.428 1 41.06 ? C9 29Q 603 B 1 
HETATM 15 C C4 29Q . . . J 3 -26.52 17.381 37.584 1 40.33 ? C4 29Q 603 B 1 
HETATM 16 C C1 29Q . . . J 3 -25.565 16.275 37.775 1 38.85 ? C1 29Q 603 B 1 
HETATM 17 N N 29Q . . . J 3 -25.142 15.731 36.69 1 41.33 ? N 29Q 603 B 1 
HETATM 18 C C3 29Q . . . J 3 -24.185 14.661 36.768 1 40.43 ? C3 29Q 603 B 1 
HETATM 19 C C2 29Q . . . J 3 -23.977 14.684 38.302 1 37.99 ? C2 29Q 603 B 1 
HETATM 20 N N1 29Q . . . J 3 -24.989 15.635 38.815 1 41.96 ? N1 29Q 603 B 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           435 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           20 
#