data_4MMF
#
_model_server_result.job_id            dPT9f3QY5QfnNI5RFyCjwg 
_model_server_result.datetime_utc      '2024-10-13 19:22:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4mmf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":605}' 
#
_entry.id    4MMF 
#
_exptl.entry_id    4MMF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              292.369 
_entity.id                          4 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'octyl beta-D-glucopyranoside' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          93.54 
_cell.angle_gamma         90 
_cell.entry_id            4MMF 
_cell.length_a            84.227 
_cell.length_b            92.137 
_cell.length_c            87.827 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4MMF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,N 1 1 
B,H,I,J,K,L,M,O 2 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 G N N 
? 4 K N N 
? 4 L N N 
? 4 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O GLY 20 A GLY 20 1_555 C NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? 
metalc ? metalc2 A O ALA 22 A ALA 22 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? 
metalc ? metalc3 A O VAL 23 A VAL 23 1_555 C NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? 
metalc ? metalc4 A OD1 ASN 27 A ASN 27 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? 
metalc ? metalc5 A O SER 254 A SER 254 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? 
metalc ? metalc6 A OG SER 254 A SER 254 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? 
metalc ? metalc7 A OD1 ASN 286 A ASN 286 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? 
metalc ? metalc8 A O ALA 351 A ALA 351 1_555 C NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? 
metalc ? metalc9 A OG1 THR 354 A THR 354 1_555 C NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? 
metalc ? metalc10 A OG SER 355 A SER 355 1_555 C NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? 
metalc ? metalc11 D NA NA . A NA 602 1_555 N O HOH . A HOH 727 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? 
metalc ? metalc12 B O GLY 20 B GLY 20 1_555 H NA NA . B NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? 
metalc ? metalc13 B O ALA 22 B ALA 22 1_555 I NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? 
metalc ? metalc14 B O VAL 23 B VAL 23 1_555 H NA NA . B NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? 
metalc ? metalc15 B OD1 ASN 27 B ASN 27 1_555 I NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? 
metalc ? metalc16 B O SER 254 B SER 254 1_555 I NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? 
metalc ? metalc17 B OG SER 254 B SER 254 1_555 I NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? 
metalc ? metalc18 B OD1 ASN 286 B ASN 286 1_555 I NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? 
metalc ? metalc19 B O ALA 351 B ALA 351 1_555 H NA NA . B NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? 
metalc ? metalc20 B OG1 THR 354 B THR 354 1_555 H NA NA . B NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? 
metalc ? metalc21 B OG SER 355 B SER 355 1_555 H NA NA . B NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? 
metalc ? metalc22 I NA NA . B NA 602 1_555 O O HOH . B HOH 723 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? 
#
_chem_comp.formula           'C14 H28 O6' 
_chem_comp.formula_weight    292.369 
_chem_comp.id                BOG 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              'octyl beta-D-glucopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 BOG sing 106 n n 
C1 C2 BOG sing 107 n n 
C1 O5 BOG sing 108 n n 
C1 H1 BOG sing 109 n n 
O1 C1' BOG sing 110 n n 
C2 O2 BOG sing 111 n n 
C2 C3 BOG sing 112 n n 
C2 H2 BOG sing 113 n n 
O2 HO2 BOG sing 114 n n 
C3 O3 BOG sing 115 n n 
C3 C4 BOG sing 116 n n 
C3 H3 BOG sing 117 n n 
O3 HO3 BOG sing 118 n n 
C4 O4 BOG sing 119 n n 
C4 C5 BOG sing 120 n n 
C4 H4 BOG sing 121 n n 
O4 HO4 BOG sing 122 n n 
C5 O5 BOG sing 123 n n 
C5 C6 BOG sing 124 n n 
C5 H5 BOG sing 125 n n 
C6 O6 BOG sing 126 n n 
C6 H61 BOG sing 127 n n 
C6 H62 BOG sing 128 n n 
O6 HO6 BOG sing 129 n n 
C1' C2' BOG sing 130 n n 
C1' "H1'1" BOG sing 131 n n 
C1' "H1'2" BOG sing 132 n n 
C2' C3' BOG sing 133 n n 
C2' "H2'1" BOG sing 134 n n 
C2' "H2'2" BOG sing 135 n n 
C3' C4' BOG sing 136 n n 
C3' "H3'1" BOG sing 137 n n 
C3' "H3'2" BOG sing 138 n n 
C4' C5' BOG sing 139 n n 
C4' "H4'1" BOG sing 140 n n 
C4' "H4'2" BOG sing 141 n n 
C5' C6' BOG sing 142 n n 
C5' "H5'1" BOG sing 143 n n 
C5' "H5'2" BOG sing 144 n n 
C6' C7' BOG sing 145 n n 
C6' "H6'1" BOG sing 146 n n 
C6' "H6'2" BOG sing 147 n n 
C7' C8' BOG sing 148 n n 
C7' "H7'1" BOG sing 149 n n 
C7' "H7'2" BOG sing 150 n n 
C8' "H8'1" BOG sing 151 n n 
C8' "H8'2" BOG sing 152 n n 
C8' "H8'3" BOG sing 153 n n 
#
_pdbx_chem_comp_identifier.comp_id            BOG 
_pdbx_chem_comp_identifier.identifier         b-octylglucoside 
_pdbx_chem_comp_identifier.type               'IUPAC CARBOHYDRATE SYMBOL' 
_pdbx_chem_comp_identifier.program            PDB-CARE 
_pdbx_chem_comp_identifier.program_version    1 
#
_atom_sites.entry_id                     4MMF 
_atom_sites.fract_transf_matrix[1][1]    0.011873 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000734 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010853 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011408 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NA A 1 601 751 NA NA . 
D 2 NA A 1 602 752 NA NA . 
E 3 29Q A 1 603 4 29Q DUM . 
F 4 BOG A 1 604 2 BOG BOG . 
G 4 BOG A 1 605 4 BOG BOG . 
H 2 NA B 1 601 751 NA NA . 
I 2 NA B 1 602 752 NA NA . 
J 3 29Q B 1 603 4 29Q DUM . 
K 4 BOG B 1 604 1 BOG BOG . 
L 4 BOG B 1 605 605 BOG BOG . 
M 4 BOG B 1 606 5 BOG BOG . 
N 5 HOH A 1 701 1 HOH HOH . 
N 5 HOH A 2 702 2 HOH HOH . 
N 5 HOH A 3 703 3 HOH HOH . 
N 5 HOH A 4 704 5 HOH HOH . 
N 5 HOH A 5 705 8 HOH HOH . 
N 5 HOH A 6 706 12 HOH HOH . 
N 5 HOH A 7 707 13 HOH HOH . 
N 5 HOH A 8 708 14 HOH HOH . 
N 5 HOH A 9 709 16 HOH HOH . 
N 5 HOH A 10 710 20 HOH HOH . 
N 5 HOH A 11 711 23 HOH HOH . 
N 5 HOH A 12 712 24 HOH HOH . 
N 5 HOH A 13 713 25 HOH HOH . 
N 5 HOH A 14 714 28 HOH HOH . 
N 5 HOH A 15 715 29 HOH HOH . 
N 5 HOH A 16 716 32 HOH HOH . 
N 5 HOH A 17 717 34 HOH HOH . 
N 5 HOH A 18 718 35 HOH HOH . 
N 5 HOH A 19 719 38 HOH HOH . 
N 5 HOH A 20 720 39 HOH HOH . 
N 5 HOH A 21 721 41 HOH HOH . 
N 5 HOH A 22 722 44 HOH HOH . 
N 5 HOH A 23 723 47 HOH HOH . 
N 5 HOH A 24 724 48 HOH HOH . 
N 5 HOH A 25 725 49 HOH HOH . 
N 5 HOH A 26 726 50 HOH HOH . 
N 5 HOH A 27 727 52 HOH HOH . 
N 5 HOH A 28 728 53 HOH HOH . 
O 5 HOH B 1 701 4 HOH HOH . 
O 5 HOH B 2 702 6 HOH HOH . 
O 5 HOH B 3 703 9 HOH HOH . 
O 5 HOH B 4 704 10 HOH HOH . 
O 5 HOH B 5 705 11 HOH HOH . 
O 5 HOH B 6 706 15 HOH HOH . 
O 5 HOH B 7 707 17 HOH HOH . 
O 5 HOH B 8 708 18 HOH HOH . 
O 5 HOH B 9 709 19 HOH HOH . 
O 5 HOH B 10 710 21 HOH HOH . 
O 5 HOH B 11 711 22 HOH HOH . 
O 5 HOH B 12 712 26 HOH HOH . 
O 5 HOH B 13 713 30 HOH HOH . 
O 5 HOH B 14 714 31 HOH HOH . 
O 5 HOH B 15 715 33 HOH HOH . 
O 5 HOH B 16 716 36 HOH HOH . 
O 5 HOH B 17 717 37 HOH HOH . 
O 5 HOH B 18 718 40 HOH HOH . 
O 5 HOH B 19 719 42 HOH HOH . 
O 5 HOH B 20 720 43 HOH HOH . 
O 5 HOH B 21 721 45 HOH HOH . 
O 5 HOH B 22 722 46 HOH HOH . 
O 5 HOH B 23 723 51 HOH HOH . 
O 5 HOH B 24 724 54 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BOG . . . L 4 -49.252 33.643 32.953 1 55.78 ? C1 BOG 605 B 1 
HETATM 2 O O1 BOG . . . L 4 -50.463 33.192 32.446 1 55.63 ? O1 BOG 605 B 1 
HETATM 3 C C2 BOG . . . L 4 -49.508 34.586 34.108 1 59.31 ? C2 BOG 605 B 1 
HETATM 4 O O2 BOG . . . L 4 -49.965 35.812 33.577 1 52.12 ? O2 BOG 605 B 1 
HETATM 5 C C3 BOG . . . L 4 -48.194 34.824 34.83 1 59.02 ? C3 BOG 605 B 1 
HETATM 6 O O3 BOG . . . L 4 -48.37 35.676 35.956 1 53.8 ? O3 BOG 605 B 1 
HETATM 7 C C4 BOG . . . L 4 -47.578 33.507 35.254 1 64.59 ? C4 BOG 605 B 1 
HETATM 8 O O4 BOG . . . L 4 -46.35 33.737 35.918 1 65.92 ? O4 BOG 605 B 1 
HETATM 9 C C5 BOG . . . L 4 -47.359 32.716 33.985 1 61.97 ? C5 BOG 605 B 1 
HETATM 10 O O5 BOG . . . L 4 -48.619 32.485 33.412 1 58.89 ? O5 BOG 605 B 1 
HETATM 11 C C6 BOG . . . L 4 -46.76 31.369 34.261 1 61.32 ? C6 BOG 605 B 1 
HETATM 12 O O6 BOG . . . L 4 -47.533 30.727 35.256 1 76.95 ? O6 BOG 605 B 1 
HETATM 13 C C1' BOG . . . L 4 -50.274 32.522 31.23 1 45.95 ? C1' BOG 605 B 1 
HETATM 14 C C2' BOG . . . L 4 -51.567 31.849 30.854 1 46.13 ? C2' BOG 605 B 1 
HETATM 15 C C3' BOG . . . L 4 -51.675 31.584 29.369 1 48.57 ? C3' BOG 605 B 1 
HETATM 16 C C4' BOG . . . L 4 -50.491 30.888 28.73 1 45.47 ? C4' BOG 605 B 1 
HETATM 17 C C5' BOG . . . L 4 -50.845 30.491 27.319 1 41.27 ? C5' BOG 605 B 1 
HETATM 18 C C6' BOG . . . L 4 -49.838 29.503 26.788 1 37.8 ? C6' BOG 605 B 1 
HETATM 19 C C7' BOG . . . L 4 -50.08 29.153 25.343 1 40.9 ? C7' BOG 605 B 1 
HETATM 20 C C8' BOG . . . L 4 -48.876 28.454 24.793 1 35.47 ? C8' BOG 605 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           20 
#