data_4MN3
#
_model_server_result.job_id            N8Ye_XmfGaDywKo9VaN3yQ 
_model_server_result.datetime_utc      '2024-12-28 21:16:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4mn3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":102}' 
#
_entry.id    4MN3 
#
_exptl.entry_id    4MN3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          119.02 
_cell.angle_gamma         90 
_cell.entry_id            4MN3 
_cell.length_a            63.29 
_cell.length_b            31.86 
_cell.length_c            38.39 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4MN3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C ACE 1 B ACE 1 1_555 B N PHE 2 B PHE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.578 ? 
covale ? covale2 B C TYR 4 B TYR 4 1_555 B N M3L 5 B M3L 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale3 B C M3L 5 B M3L 5 1_555 B N SER 6 B SER 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale4 B C SER 6 B SER 6 1_555 B N NH2 7 B NH2 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.583 ? 
metalc ? metalc1 A OE1 GLU 2 A GLU 2 1_555 F MG MG . A MG 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
_atom_sites.entry_id                     4MN3 
_atom_sites.fract_transf_matrix[1][1]    0.0158 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.008765 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.031387 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.029788 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 EDO A 1 101 1 EDO EDO . 
D 3 EDO A 1 102 2 EDO EDO . 
E 3 EDO A 1 103 3 EDO EDO . 
F 4 MG A 1 104 1 MG MG . 
G 5 P33 A 1 105 1 P33 P33 . 
H 6 HOH A 1 201 1 HOH HOH . 
H 6 HOH A 2 202 2 HOH HOH . 
H 6 HOH A 3 203 3 HOH HOH . 
H 6 HOH A 4 204 4 HOH HOH . 
H 6 HOH A 5 205 6 HOH HOH . 
H 6 HOH A 6 206 7 HOH HOH . 
H 6 HOH A 7 207 8 HOH HOH . 
H 6 HOH A 8 208 9 HOH HOH . 
H 6 HOH A 9 209 10 HOH HOH . 
H 6 HOH A 10 210 11 HOH HOH . 
H 6 HOH A 11 211 12 HOH HOH . 
H 6 HOH A 12 212 13 HOH HOH . 
H 6 HOH A 13 213 15 HOH HOH . 
H 6 HOH A 14 214 16 HOH HOH . 
H 6 HOH A 15 215 17 HOH HOH . 
H 6 HOH A 16 216 19 HOH HOH . 
H 6 HOH A 17 217 20 HOH HOH . 
H 6 HOH A 18 218 21 HOH HOH . 
H 6 HOH A 19 219 22 HOH HOH . 
H 6 HOH A 20 220 23 HOH HOH . 
H 6 HOH A 21 221 24 HOH HOH . 
H 6 HOH A 22 222 25 HOH HOH . 
H 6 HOH A 23 223 26 HOH HOH . 
H 6 HOH A 24 224 27 HOH HOH . 
H 6 HOH A 25 225 28 HOH HOH . 
H 6 HOH A 26 226 29 HOH HOH . 
H 6 HOH A 27 227 30 HOH HOH . 
H 6 HOH A 28 228 31 HOH HOH . 
H 6 HOH A 29 229 32 HOH HOH . 
H 6 HOH A 30 230 33 HOH HOH . 
H 6 HOH A 31 231 34 HOH HOH . 
H 6 HOH A 32 232 35 HOH HOH . 
H 6 HOH A 33 233 36 HOH HOH . 
H 6 HOH A 34 234 37 HOH HOH . 
H 6 HOH A 35 235 38 HOH HOH . 
H 6 HOH A 36 236 39 HOH HOH . 
H 6 HOH A 37 237 40 HOH HOH . 
I 6 HOH B 1 101 5 HOH HOH . 
I 6 HOH B 2 102 14 HOH HOH . 
I 6 HOH B 3 103 18 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 3 13.42 -12.738 12.298 1 33.01 ? C1 EDO 102 A 1 
HETATM 2 O O1 EDO . . . D 3 13.217 -13.519 11.112 1 52.25 ? O1 EDO 102 A 1 
HETATM 3 C C2 EDO . . . D 3 14.774 -12.996 12.917 1 37.81 ? C2 EDO 102 A 1 
HETATM 4 O O2 EDO . . . D 3 15.714 -12.079 12.368 1 33.48 ? O2 EDO 102 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           262 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           4 
#